Cp4.1LG01g03090.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAGGAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTGTTCGTTCGACATTCGTATTCTCGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGTGAATTTTATTTTTTACTTGCTATCTGATTCGGGAAATGACGATTATCGGCACTTATAATTTATGTTCTAAATGGGGTTTGGCGTTTTAGGTATAGGAAAGGTTTGTTATGTGATTAAGATCTTTCTTTTTGAATCTATTGATTTTAACGATTCAATGCATTTGCTTTTCACTAAAGAGAGATAAAGTTAAGGATGTCATTTTCTGGCGAAGTGAATTTTTCGAGTGTTTTCTTTTGCGGATCGCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCTTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGTTTTTCTTTTCATATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTATGTGGCTATAGTTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTAGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTTAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATCTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAAGAAGGTGTTCCACATGGTTCTGAATAGAAGAAGGATGGAGCACAAAATAACATGTTATCTACAGGTTCCTTGGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGATGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGTAACACTCCAATAAAAAA TAAGGAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTGTTCGTTCGACATTCGTATTCTCGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCTTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGTTTTTCTTTTCATATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTATGTGGCTATAGTTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTAGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTTAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATCTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAAGAAGGTGTTCCACATGGTTCTGAATAGAAGAAGGATGGAGCACAAAATAACATGTTATCTACAGGTTCCTTGGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGATGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGTAACACTCCAATAAAAAA ATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAG MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQIDRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV
BLAST of Cp4.1LG01g03090.1 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 2.2e-50 Identity = 94/164 (57.32%), Postives = 131/164 (79.88%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2) HSP 1 Score: 73.6 bits (179), Expect = 4.1e-12 Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 3.4e-11 Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10 Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. Swiss-Prot
Match: RS11_ARCB4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.0e-10 Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 7.5e-106 Identity = 211/287 (73.52%), Postives = 234/287 (81.53%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61 Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61 Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 6.9e-59 Identity = 114/167 (68.26%), Postives = 142/167 (85.03%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TrEMBL
Match: M5VQ17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 6.4e-57 Identity = 114/160 (71.25%), Postives = 137/160 (85.62%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein) HSP 1 Score: 200.7 bits (509), Expect = 1.2e-51 Identity = 94/164 (57.32%), Postives = 131/164 (79.88%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus]) HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105 Identity = 211/287 (73.52%), Postives = 234/287 (81.53%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo]) HSP 1 Score: 375.2 bits (962), Expect = 1.0e-100 Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina]) HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61 Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera]) HSP 1 Score: 235.7 bits (600), Expect = 9.8e-59 Identity = 114/167 (68.26%), Postives = 142/167 (85.03%), Query Frame = 1
BLAST of Cp4.1LG01g03090.1 vs. NCBI nr
Match: gi|1009158586|ref|XP_015897366.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Ziziphus jujuba]) HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57 Identity = 122/218 (55.96%), Postives = 155/218 (71.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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