CmaCh04G003930 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAATTAGGGTTTTTTTTCGTTCGACATTCGTATTCCCGGAACTTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGTGAATTTTATTTTTTACTTGCTATCTGATTCGGGAAATGACGATTATCGGTATTTATAATTTATGTTCTAAATGGGGTTTGGCGTTTTAGGTATAGGAAAGGTTTGTTTAGTGACTAAGATCTTTCTTTCTGGATCTATTGATTTTAACGATTCAATGCATTTGCTTTTCACTAAAGAGAGATAAAGTTAAGGATGTCATTTTCTGGCGGAGTGAATTTTTCGAGTGTTTTCTTTTGCGGATCGCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTTTCTTTGTTGGAAAGTTTTCCTGGTTCAAATCGATGTAGCTCGCCTTCAAGTTCTTACTTGCCTTTTGCAATAATGATGACAATTGGATGTTTCTTTATATATACATCAGTGTAAAATTTTACTGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCCTTTTATTCAAGTTCAACAACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATACCAACTTTTTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTACGTGGCTATAGTTTCTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTGGTCTCTAATTGTGACCAGATTGCGCCAACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATTAACATTCTTGCGTGCTGAATTTTTTATGAAAATTTGCAGGCTCTTTTATCATTGATGGTGGATTTATACTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTTGCTAACAGAGAGCTATTTATGAACCAGAAAGTCTCAATACATAGTTCGTAGATGAAGGCGTTCCATATAGTTCTGAATAGAAGGATTGAGCAAAAATTAACATGCTATCTACAGGTTGTTTCTTAGTATGATGGCTCAGTTCAGGTTACTGCTGCGCCCATAGTTGCCTACTGAACCTTTTCAGCTGTGTTATGTTCAGATTGTCTCTTCCATAATAGTTTACGGCATACACGAACTGGGCTTCTGGATTCGAGTAACTGAAATTGAAAATATTCTTTTCTACTTGGTAGTGAACATGTTGAAAGTAAGTTCTGTTTCATTCAACTGGGTCAGAGGGATACCCTCATTTAATGGGGATTTTTTGAAATCTAGGCACAAAAAACTGAATAGAAATTCAACTATCAGCTCGATTTTGCATTATCATGAAAAGGGGAAAGAGTAAGGAGGGGAAATAAATAAGCTACAGTAAAGAAAACAAACTACAAGACTGAATCATTGATGCATCTAAAGGTTGGATGGAAGCCAAACTAATCCGAAGATGTCTTTTTAAGTTGTCATAGATCTACAGCGAGGGATAGCATCAACGGAATTCACGAAATTTCAAATATCTCAGGCGTGCACACGAATGAACGAACTACAGAGGCAACAACCTCGAAAAGCCTTCCGAGTAGGGTGTAACAGAGCTTCCTCTGAATCCAGATGGCCATAGAAAATCAACTGTATGTTGCATTGCAGTGCACCGGAG CAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAATTAGGGTTTTTTTTCGTTCGACATTCGTATTCCCGGAACTTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCCTTTTATTCAAGTTCAACAACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATACCAACTTTTTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTACGTGGCTATAGTTTCTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTGGTCTCTAATTGTGACCAGATTGCGCCAACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATTAACATTCTTGCGTGCTGAATTTTTTATGAAAATTTGCAGGCTCTTTTATCATTGATGGTGGATTTATACTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTTGCTAACAGAGAGCTATTTATGAACCAGAAAGTCTCAATACATAGTTCGTAGATGAAGGCGTTCCATATAGTTCTGAATAGAAGGATTGAGCAAAAATTAACATGCTATCTACAGGTTGTTTCTTAGTATGATGGCTCAGTTCAGGTTACTGCTGCGCCCATAGTTGCCTACTGAACCTTTTCAGCTGTGTTATGTTCAGATTGTCTCTTCCATAATAGTTTACGGCATACACGAACTGGGCTTCTGGATTCGAGTAACTGAAATTGAAAATATTCTTTTCTACTTGGTAGTGAACATGTTGAAAGTAAGTTCTGTTTCATTCAACTGGGTCAGAGGGATACCCTCATTTAATGGGGATTTTTTGAAATCTAGGCACAAAAAACTGAATAGAAATTCAACTATCAGCTCGATTTTGCATTATCATGAAAAGGGGAAAGAGTAAGGAGGGGAAATAAATAAGCTACAGTAAAGAAAACAAACTACAAGACTGAATCATTGATGCATCTAAAGGTTGGATGGAAGCCAAACTAATCCGAAGATGTCTTTTTAAGTTGTCATAGATCTACAGCGAGGGATAGCATCAACGGAATTCACGAAATTTCAAATATCTCAGGCGTGCACACGAATGAACGAACTACAGAGGCAACAACCTCGAAAAGCCTTCCGAGTAGGGTGTAACAGAGCTTCCTCTGAATCCAGATGGCCATAGAAAATCAACTGTATGTTGCATTGCAGTGCACCGGAG ATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAG MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQLDRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 6.8e-52 Identity = 95/162 (58.64%), Postives = 132/162 (81.48%), Query Frame = 1
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11 Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 1
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.5e-11 Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RS11_ARCB4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RS11_CHLT3 (30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.2e-10 Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 8.0e-108 Identity = 213/287 (74.22%), Postives = 234/287 (81.53%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 5.1e-62 Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 5.1e-62 Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59 Identity = 115/167 (68.86%), Postives = 141/167 (84.43%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TrEMBL
Match: M5VQ17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 2.6e-58 Identity = 116/160 (72.50%), Postives = 137/160 (85.62%), Query Frame = 1
BLAST of CmaCh04G003930 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein) HSP 1 Score: 205.7 bits (522), Expect = 3.8e-53 Identity = 95/162 (58.64%), Postives = 132/162 (81.48%), Query Frame = 1
BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus]) HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107 Identity = 213/287 (74.22%), Postives = 234/287 (81.53%), Query Frame = 1
BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo]) HSP 1 Score: 384.4 bits (986), Expect = 1.7e-103 Identity = 209/288 (72.57%), Postives = 228/288 (79.17%), Query Frame = 1
BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina]) HSP 1 Score: 246.1 bits (627), Expect = 7.3e-62 Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1
BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera]) HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59 Identity = 115/167 (68.86%), Postives = 141/167 (84.43%), Query Frame = 1
BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|595801528|ref|XP_007201837.1| (hypothetical protein PRUPE_ppa011457mg [Prunus persica]) HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58 Identity = 116/160 (72.50%), Postives = 137/160 (85.62%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |