CmaCh04G003930 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G003930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S11
LocationCma_Chr04 : 1993856 .. 1996562 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAATTAGGGTTTTTTTTCGTTCGACATTCGTATTCCCGGAACTTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGTGAATTTTATTTTTTACTTGCTATCTGATTCGGGAAATGACGATTATCGGTATTTATAATTTATGTTCTAAATGGGGTTTGGCGTTTTAGGTATAGGAAAGGTTTGTTTAGTGACTAAGATCTTTCTTTCTGGATCTATTGATTTTAACGATTCAATGCATTTGCTTTTCACTAAAGAGAGATAAAGTTAAGGATGTCATTTTCTGGCGGAGTGAATTTTTCGAGTGTTTTCTTTTGCGGATCGCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTTTCTTTGTTGGAAAGTTTTCCTGGTTCAAATCGATGTAGCTCGCCTTCAAGTTCTTACTTGCCTTTTGCAATAATGATGACAATTGGATGTTTCTTTATATATACATCAGTGTAAAATTTTACTGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCCTTTTATTCAAGTTCAACAACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATACCAACTTTTTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTACGTGGCTATAGTTTCTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTGGTCTCTAATTGTGACCAGATTGCGCCAACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATTAACATTCTTGCGTGCTGAATTTTTTATGAAAATTTGCAGGCTCTTTTATCATTGATGGTGGATTTATACTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTTGCTAACAGAGAGCTATTTATGAACCAGAAAGTCTCAATACATAGTTCGTAGATGAAGGCGTTCCATATAGTTCTGAATAGAAGGATTGAGCAAAAATTAACATGCTATCTACAGGTTGTTTCTTAGTATGATGGCTCAGTTCAGGTTACTGCTGCGCCCATAGTTGCCTACTGAACCTTTTCAGCTGTGTTATGTTCAGATTGTCTCTTCCATAATAGTTTACGGCATACACGAACTGGGCTTCTGGATTCGAGTAACTGAAATTGAAAATATTCTTTTCTACTTGGTAGTGAACATGTTGAAAGTAAGTTCTGTTTCATTCAACTGGGTCAGAGGGATACCCTCATTTAATGGGGATTTTTTGAAATCTAGGCACAAAAAACTGAATAGAAATTCAACTATCAGCTCGATTTTGCATTATCATGAAAAGGGGAAAGAGTAAGGAGGGGAAATAAATAAGCTACAGTAAAGAAAACAAACTACAAGACTGAATCATTGATGCATCTAAAGGTTGGATGGAAGCCAAACTAATCCGAAGATGTCTTTTTAAGTTGTCATAGATCTACAGCGAGGGATAGCATCAACGGAATTCACGAAATTTCAAATATCTCAGGCGTGCACACGAATGAACGAACTACAGAGGCAACAACCTCGAAAAGCCTTCCGAGTAGGGTGTAACAGAGCTTCCTCTGAATCCAGATGGCCATAGAAAATCAACTGTATGTTGCATTGCAGTGCACCGGAG

mRNA sequence

CAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAATTAGGGTTTTTTTTCGTTCGACATTCGTATTCCCGGAACTTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCCTTTTATTCAAGTTCAACAACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATACCAACTTTTTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTACGTGGCTATAGTTTCTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTGGTCTCTAATTGTGACCAGATTGCGCCAACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATTAACATTCTTGCGTGCTGAATTTTTTATGAAAATTTGCAGGCTCTTTTATCATTGATGGTGGATTTATACTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTTGCTAACAGAGAGCTATTTATGAACCAGAAAGTCTCAATACATAGTTCGTAGATGAAGGCGTTCCATATAGTTCTGAATAGAAGGATTGAGCAAAAATTAACATGCTATCTACAGGTTGTTTCTTAGTATGATGGCTCAGTTCAGGTTACTGCTGCGCCCATAGTTGCCTACTGAACCTTTTCAGCTGTGTTATGTTCAGATTGTCTCTTCCATAATAGTTTACGGCATACACGAACTGGGCTTCTGGATTCGAGTAACTGAAATTGAAAATATTCTTTTCTACTTGGTAGTGAACATGTTGAAAGTAAGTTCTGTTTCATTCAACTGGGTCAGAGGGATACCCTCATTTAATGGGGATTTTTTGAAATCTAGGCACAAAAAACTGAATAGAAATTCAACTATCAGCTCGATTTTGCATTATCATGAAAAGGGGAAAGAGTAAGGAGGGGAAATAAATAAGCTACAGTAAAGAAAACAAACTACAAGACTGAATCATTGATGCATCTAAAGGTTGGATGGAAGCCAAACTAATCCGAAGATGTCTTTTTAAGTTGTCATAGATCTACAGCGAGGGATAGCATCAACGGAATTCACGAAATTTCAAATATCTCAGGCGTGCACACGAATGAACGAACTACAGAGGCAACAACCTCGAAAAGCCTTCCGAGTAGGGTGTAACAGAGCTTCCTCTGAATCCAGATGGCCATAGAAAATCAACTGTATGTTGCATTGCAGTGCACCGGAG

Coding sequence (CDS)

ATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCGTCTCCATTTCTCCATTTTTTGGCACTGATGGTCGATCTCCCATGTTCTCTCTCCACTCTTCTCACGGATCGGATCTCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCCGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGAATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAAGCCTCTGCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAGAAGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAG

Protein sequence

MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQLDRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.8e-52
Identity = 95/162 (58.64%), Postives = 132/162 (81.48%), Query Frame = 1

Query: 125 NADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDN 184
           N+ +G     ++FVR ++E++G    G     + PN+E NADI+H+K++RNNTF+TVTD+
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 185 KGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKK 244
           KGN K KA++G L +LKGG K++ Y A+ATAE +GR ++ +GLKSVV++V GFT+F KKK
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 245 QAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +AI+++RDGFT+SRSDQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 160 NMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVG 219
           NM+    I +++    NT IT+TD  GNTK  +S+G +   KG  + + YAA+ATAE   
Sbjct: 9   NMQKKHCITYIQSTFGNTIITLTDYNGNTKTWSSSGSVG-FKGSRRSTNYAAQATAENAA 68

Query: 220 RESRKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCR 279
           R + +LG K V +R+KG  Y K+     L         +     I  I D T   HNGCR
Sbjct: 69  RVAIQLGFKFVEVRIKGLGYGKESSLRGL---------KLGGLIITKIRDVTPTPHNGCR 125

Query: 280 LPKQRRV 287
            PK+RRV
Sbjct: 129 PPKKRRV 125

BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-11
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1

Query: 161 MEHNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGR 220
           +E  + IVH++   NNT IT+TD +GNT+   SAG L   K   K + YA+ A AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 221 ESRKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRL 280
           ++   G +++++++KG  Y KK               +     I  I++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRP 128

Query: 281 PKQRRV 287
           PK+RRV
Sbjct: 133 PKKRRV 128

BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RS11_ARCB4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLG 226
           IVH+    NNT +TVTDN GN    +SAG L   KG  K + +AA+A  E    ++ + G
Sbjct: 20  IVHIAASFNNTMVTVTDNAGNAIAWSSAGNL-GFKGSKKSTPFAAQAAVEDAMNKAMEHG 79

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 286
           +K+V ++++G    +      +   DG          + +++D T  AHNGCR PK+RRV
Sbjct: 80  IKNVGIKIQGPGSGRDTAVKAVGSMDGVR--------VTWLKDVTPLAHNGCRPPKRRRV 130

BLAST of CmaCh04G003930 vs. Swiss-Prot
Match: RS11_CHLT3 (30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-10
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 1

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLG 226
           IVH+K   NN  +T+TD  GNT   ++AG+    KG  K + YA++ TAE   +E+  LG
Sbjct: 19  IVHIKATFNNIAVTITDVTGNTVSWSTAGK-NGFKGSKKNTPYASQVTAESAAKEAYDLG 78

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQN---PIVYIEDTTRRAHNGCRLPKQ 286
           ++ V +R+KG            S RD     RS QN    +  I D T   HNGCR PK+
Sbjct: 79  MRKVDVRIKGPG----------SGRDAAI--RSLQNAGLEVKTISDITPLPHNGCRPPKR 128

BLAST of CmaCh04G003930 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 8.0e-108
Identity = 213/287 (74.22%), Postives = 234/287 (81.53%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60
           M +L L HLSSLFRSSSLS   SFS SR+SISPF G+D  S M SLH S   DL+GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRS---DLTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR WK++G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGPPNA-DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D  PN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKASAGRLE   GG KLSRY+A++ AEYVGRESRKLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

BLAST of CmaCh04G003930 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.1e-62
Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGPPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G  + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMNFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           AS+G L ELKGGPK+SRYAAEATAE+VGR +R +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +SR DQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of CmaCh04G003930 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.1e-62
Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGPPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G  + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMNFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           AS+G L ELKGGPK+SRYAAEATAE+VGR +R +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +SR DQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of CmaCh04G003930 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59
Identity = 115/167 (68.86%), Postives = 141/167 (84.43%), Query Frame = 1

Query: 120 YDGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+D  N  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ AS+G L E+KGGPKLSRYAA+ATAE+VGR +R LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  SR D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

BLAST of CmaCh04G003930 vs. TrEMBL
Match: M5VQ17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.6e-58
Identity = 116/160 (72.50%), Postives = 137/160 (85.62%), Query Frame = 1

Query: 127 DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKG 186
           +  RN +SMNFVRGILEEDG   +G SQFPR  NME NADIVH+KLM+NNTF+TVTD+KG
Sbjct: 51  NVSRNSRSMNFVRGILEEDGKENIGFSQFPRY-NMEQNADIVHIKLMKNNTFVTVTDSKG 110

Query: 187 NTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQA 246
             KL ASAG L  +KGGPKLS+YAAEATAE+VGR +R  GLKSVV++VKGFTYFKKK+QA
Sbjct: 111 KKKLGASAGSLPGMKGGPKLSKYAAEATAEHVGRMARNFGLKSVVVKVKGFTYFKKKRQA 170

Query: 247 ILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+SW++GFT+S+   NPIVYIEDTTR+ HNGCRLPK+RRV
Sbjct: 171 IVSWKEGFTNSKVGLNPIVYIEDTTRKPHNGCRLPKKRRV 209

BLAST of CmaCh04G003930 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-53
Identity = 95/162 (58.64%), Postives = 132/162 (81.48%), Query Frame = 1

Query: 125 NADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDN 184
           N+ +G     ++FVR ++E++G    G     + PN+E NADI+H+K++RNNTF+TVTD+
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 185 KGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKK 244
           KGN K KA++G L +LKGG K++ Y A+ATAE +GR ++ +GLKSVV++V GFT+F KKK
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 245 QAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +AI+++RDGFT+SRSDQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107
Identity = 213/287 (74.22%), Postives = 234/287 (81.53%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60
           M +L L HLSSLFRSSSLS   SFS SR+SISPF G+D  S M SLH S   DL+GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRS---DLTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR WK++G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGPPNA-DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D  PN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKASAGRLE   GG KLSRY+A++ AEYVGRESRKLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo])

HSP 1 Score: 384.4 bits (986), Expect = 1.7e-103
Identity = 209/288 (72.57%), Postives = 228/288 (79.17%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60
           M +L L HLS LFRSSSLS   SFS SR+SISPF G+D  S   S   SH   L+GS+Q 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSH---LTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
               SG          +VGREIVGR WKA+G QGP WGLARS+E+VSVPYS SSRCY  Y
Sbjct: 61  HNHFSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEY 120

Query: 121 DGPPNA-DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D  PN  DTGRN K++NFVRGILEED   F    Q+ RP NMEHNADIVH+KLMRNN F+
Sbjct: 121 DNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFV 180

Query: 181 TVTDNKGNTKLKASAGRLEELKGG-PKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFT 240
           TVTDNKGNTKLKASAGRLEELKGG  KLSRY+ ++ AEYVGRESRKLGLKSVVMRVKGFT
Sbjct: 181 TVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFT 240

Query: 241 YFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 241 FFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina])

HSP 1 Score: 246.1 bits (627), Expect = 7.3e-62
Identity = 129/215 (60.00%), Postives = 165/215 (76.74%), Query Frame = 1

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGPPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G  + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMNFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           AS+G L ELKGGPK+SRYAAEATAE+VGR +R +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +SR DQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera])

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 115/167 (68.86%), Postives = 141/167 (84.43%), Query Frame = 1

Query: 120 YDGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+D  N  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ AS+G L E+KGGPKLSRYAA+ATAE+VGR +R LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  SR D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

BLAST of CmaCh04G003930 vs. NCBI nr
Match: gi|595801528|ref|XP_007201837.1| (hypothetical protein PRUPE_ppa011457mg [Prunus persica])

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 116/160 (72.50%), Postives = 137/160 (85.62%), Query Frame = 1

Query: 127 DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKG 186
           +  RN +SMNFVRGILEEDG   +G SQFPR  NME NADIVH+KLM+NNTF+TVTD+KG
Sbjct: 51  NVSRNSRSMNFVRGILEEDGKENIGFSQFPRY-NMEQNADIVHIKLMKNNTFVTVTDSKG 110

Query: 187 NTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKKKQA 246
             KL ASAG L  +KGGPKLS+YAAEATAE+VGR +R  GLKSVV++VKGFTYFKKK+QA
Sbjct: 111 KKKLGASAGSLPGMKGGPKLSKYAAEATAEHVGRMARNFGLKSVVVKVKGFTYFKKKRQA 170

Query: 247 ILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+SW++GFT+S+   NPIVYIEDTTR+ HNGCRLPK+RRV
Sbjct: 171 IVSWKEGFTNSKVGLNPIVYIEDTTRKPHNGCRLPKKRRV 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RT11_ARATH6.8e-5258.64Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE... [more]
RT11_MARPO1.2e-1138.58Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2[more]
RT11_PROWI1.5e-1135.71Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=... [more]
RS11_ARCB41.7e-1035.8330S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV... [more]
RS11_CHLT32.2e-1039.8430S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-7... [more]
Match NameE-valueIdentityDescription
A0A0A0KVQ8_CUCSA8.0e-10874.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1[more]
A0A067EMW2_CITSI5.1e-6260.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1[more]
V4U9L5_9ROSI5.1e-6260.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1[more]
F6I489_VITVI1.8e-5968.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=... [more]
M5VQ17_PRUPE2.6e-5872.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G31817.13.8e-5358.64 Ribosomal L18p/L5e family protein[more]
Match NameE-valueIdentityDescription
gi|449438783|ref|XP_004137167.1|1.1e-10774.22PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus][more]
gi|659111225|ref|XP_008455641.1|1.7e-10372.57PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo][more]
gi|567906735|ref|XP_006445681.1|7.3e-6260.00hypothetical protein CICLE_v10016360mg [Citrus clementina][more]
gi|731390545|ref|XP_010650403.1|2.6e-5968.86PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera][more]
gi|595801528|ref|XP_007201837.1|3.7e-5872.50hypothetical protein PRUPE_ppa011457mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G003930.1CmaCh04G003930.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 161..286
score: 1.1
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 133..286
score: 16
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 126..286
score: 6.9
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 167..285
score: 2.3
NoneNo IPR availablePANTHERPTHR11759:SF830S RIBOSOMAL PROTEIN S11-RELATEDcoord: 126..286
score: 6.9
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 165..286
score: 1.74

The following gene(s) are paralogous to this gene:

None