Cucsa.398050 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.398050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal protein S11
Location	scaffold04158 : 608007 .. 609256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCGTAATCGTATGTGATGTCTCATCCACCAAGACCGGAAAATACTTTAGGGTTTtCTTTTCGCCACTTCTTATTCCCATAACCACCGCCAGCGCCCGTCCGACCACGATGCCGAAACTCTCCCTCTCTCACCTCTCCTCTCTCTTCCGCTCATCCTCTCTCTCTCCTGCACCTTCTTTTTCTCCTTCTCGCCTCTCCATTTCACCGTTCATTGGCTCAGATGCGCCTTCACGCATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCCTTCAACCACACAACCAGTTCTCAGGTGAATACTGCTCTTTGTCTTCTATCTAATTCGGGAAATGACAGTTAGAATTTATTGGTTGATTTCTTTAGTGAGTGATGAGTGTTCTGCGTATTGCAGGCTGTCTTCGTGATTCTGCTAATGTGGGCCGAGAGATTGTAGGACGTGGTTGGAAATCCATGGGAGTTCAGGGTCCTAGTTCGGGTTTGGCGCGTCCAAGTGAAGGTGTCTCCATTCCTTATTCTATTAGCTCTAGATGTTATGGAGAGTATGACAACCGGCCTAATCCTCCAGATACAGGAAGGAATCTTAAGCCTATGAACTTCGTGAGGGGAATTTTAGAGGAAGAGGAAAGGGGTTTTTTtGGTACTCCTCAGTTCCTTAGGCCATCCAATATGGAACACAATGCTGATATCGTTCATATAAAGCTGATGCGTAACAATTCATTTGTCACTGTTACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGGAGGGGCTAAACTGTCTCGTTATTCTGCTGATTCAATTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTTAAAGGCTTTACTTTTTTTAAGAAGAAAAAGCAAGCCATCTTGAGTTGGAGAGATGGATTTACTGATTCTAGAACTGACCAAAATCCGATTGTTTACGTTGAAGATACGACGAGACGTGCACACAATGGTTGCCGACTCCCAAAGAAACGCCGTGTCTAGATTTACCGTGTTGTCTTCATTTTCTTATATCTTTGCTGGCTCAGTTTCGAATTTTTGTAGCTAGCTTGCCTTCAAGTTCTTACTTGCTTGTTACAATAATGATGACAATAGAATGGTTTTCTATATACATCAGTGTAAAACATTTGCTTTTTAGTTATTACCATATGGACTTCATTTCAATAGAACGATATCAAGAGTTTAAGTGGC

mRNA sequence

TCCTCGTAATCGTATGTGATGTCTCATCCACCAAGACCGGAAAATACTTTAGGGTTTTCTTTTCGCCACTTCTTATTCCCATAACCACCGCCAGCGCCCGTCCGACCACGATGCCGAAActctccctctctcacctctcctctctcttccgctcatcctctctctctcctgcaccttctttttctccttctcgcctctccATTTCACCGTTCATTGGCTCAGATGCGCCTTCACGCATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCCTTCAACCACACAACCAGTTCTCAGGCTGTCTTCGTGATTCTGCTAATGTGGGCCGAGAGATTGTAGGACGTGGTTGGAAATCCATGGGAGTTCAGGGTCCTAGTTCGGGTTTGGCGCGTCCAAGTGAAGGTGTCTCCATTCCTTATTCTATTAGCTCTAGATGTTATGGAGAGTATGACAACCGGCCTAATCCTCCAGATACAGGAAGGAATCTTAAGCCTATGAACTTCGTGAGGGGAATTTTAGAGGAAGAGGAAAGGGGTTTTTTTGGTACTCCTCAGTTCCTTAGGCCATCCAATATGGAACACAATGCTGATATCGTTCATATAAAGCTGATGCGTAACAATTCATTTGTCACTGTTACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGGAGGGGCTAAACTGTCTCGTTATTCTGCTGATTCAATTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTTAAAGGCTTTACTTTTTTTAAGAAGAAAAAGCAAGCCATCTTGAGTTGGAGAGATGGATTTACTGATTCTAGAACTGACCAAAATCCGATTGTTTACGTTGAAGATACGACGAGACGTGCACACAATGGTTGCCGACTCCCAAAGAAACGCCGTGTCTAGATTTACCGTGTTGTCTTCATTTTCTTATATCTTTGCTGGCTCAGTTTCGAATTTTTGTAGCTAGCTTGCCTTCAAGTTCTTACTTGCTTGTTACAATAATGATGACAATAGAATGGTTTTCTATATACATCAGTGTAAAACATTTGCTTTTTAGTTATTACCATATGGACTTCATTTCAATAGAACGATATCAAGAGTTTAAGTGGC

Coding sequence (CDS)

ATGCCGAAACTCTCCCTCTCTCACCTCTCCTCTCTCTTCCGCTCATCCTCTCTCTCTCCTGCACCTTCTTTTTCTCCTTCTCGCCTCTCCATTTCACCGTTCATTGGCTCAGATGCGCCTTCACGCATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCCTTCAACCACACAACCAGTTCTCAGGCTGTCTTCGTGATTCTGCTAATGTGGGCCGAGAGATTGTAGGACGTGGTTGGAAATCCATGGGAGTTCAGGGTCCTAGTTCGGGTTTGGCGCGTCCAAGTGAAGGTGTCTCCATTCCTTATTCTATTAGCTCTAGATGTTATGGAGAGTATGACAACCGGCCTAATCCTCCAGATACAGGAAGGAATCTTAAGCCTATGAACTTCGTGAGGGGAATTTTAGAGGAAGAGGAAAGGGGTTTTTTtGGTACTCCTCAGTTCCTTAGGCCATCCAATATGGAACACAATGCTGATATCGTTCATATAAAGCTGATGCGTAACAATTCATTTGTCACTGTTACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGGAGGGGCTAAACTGTCTCGTTATTCTGCTGATTCAATTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTTAAAGGCTTTACTTTTTTTAAGAAGAAAAAGCAAGCCATCTTGAGTTGGAGAGATGGATTTACTGATTCTAGAACTGACCAAAATCCGATTGTTTACGTTGAAGATACGACGAGACGTGCACACAATGGTTGCCGACTCCCAAAGAAACGCCGTGTCTAG

Protein sequence

MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV*

Homology

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BLAST of Cucsa.398050 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.5e-48
Identity = 117/284 (41.20%), Postives = 163/284 (57.39%), Query Frame = 1


Query: 10  SSLFRSSSLSPAPSFSPSRL-------------SISPFIGSDAPSRMSSLHRSDLTGSLQ 69
           S L  +  +  +P  +PS L              ++ F   +AP    S  RS L  SL 
Sbjct: 55  SGLSNTGRIGSSPEPNPSTLRTFGDMKAGLLNRGVNGFSAPNAPPTFKSSLRSRLPNSLP 114

Query: 70  PHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNR 129
             +QF        N G                 SG + PS      ++ SS    E    
Sbjct: 115 --DQFGQTNPGLPNTG----------------GSGFSAPSLSSYENFTQSSSLLKENSR- 174

Query: 130 PNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVT 189
                +G     ++FVR ++E+E R   G     +  N+E NADI+HIK++RNN+FVTVT
Sbjct: 175 -----SGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 234

Query: 190 DNKGNTKLKASAGRL---EGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKK 249
           D+KGN K KA++G L   +GG K++ Y+AD+ AE +GR ++ +GLKSVV++V GFT F K
Sbjct: 235 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 294

Query: 250 KKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           KK+AI+++RDGFT+SR+DQNPIVY+EDTTR+AHNGCRLP+KRRV
Sbjct: 295 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

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BLAST of Cucsa.398050 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 1


Query: 153 SNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVG 212
           +NM+    I +I+    N+ +T+TD  GNTK  +S+G +  +G  + + Y+A + AE   
Sbjct: 8   TNMQKKHCITYIQSTFGNTIITLTDYNGNTKTWSSSGSVGFKGSRRSTNYAAQATAENAA 67

Query: 213 RESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCR 272
           R + +LG K V +R+KG  + K+     L         +     I  + D T   HNGCR
Sbjct: 68  RVAIQLGFKFVEVRIKGLGYGKESSLRGL---------KLGGLIITKIRDVTPTPHNGCR 125

Query: 273 LPKKRRV 278
            PKKRRV
Sbjct: 128 PPKKRRV 125

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BLAST of Cucsa.398050 vs. Swiss-Prot
Match: RS11_CHLT3 (30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsK PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-10
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 161 IVHIKLMRNNSFVTVTDNKGNTKLKASAGR--LEGGAKLSRYSADSIAEYVGRESRKLGL 220
           IVHIK   NN  VT+TD  GNT   ++AG+   +G  K + Y++   AE   +E+  LG+
Sbjct: 19  IVHIKATFNNIAVTITDVTGNTVSWSTAGKNGFKGSKKNTPYASQVTAESAAKEAYDLGM 78

Query: 221 KSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           + V +R+KG      +  AI S ++   + +T       + D T   HNGCR PK+RRV
Sbjct: 79  RKVDVRIKGPG--SGRDAAIRSLQNAGLEVKT-------ISDITPLPHNGCRPPKRRRV 128

[Close]

BLAST of Cucsa.398050 vs. Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-09
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 161 IVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVGRESRKLGL 220
           + H+    NN+ VT+TD +GN    +SAG +  +G  K + Y+A   AE  G+++ + G+
Sbjct: 20  VAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSRKSTPYAAQMAAEDAGKKAMEHGM 79

Query: 221 KSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           K++ ++V G    ++     L    GFT        I  ++D T   HNGCR PK+RRV
Sbjct: 80  KTIEVKVSGPGSGRESALRALQ-SVGFT--------ITTIQDVTPIPHNGCRPPKRRRV 129

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BLAST of Cucsa.398050 vs. Swiss-Prot
Match: RS11_NITOC (30S ribosomal protein S11 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsK PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-09
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 1


Query: 161 IVHIKLMRNNSFVTVTDNKGNTKLKASAG--RLEGGAKLSRYSADSIAEYVGRESRKLGL 220
           I HI    NN+ VT+TD +GNT   A++G     G  K + ++A   AE  GR  +++G+
Sbjct: 18  IAHIHASFNNTIVTITDRQGNTLAWATSGGSGFRGSRKSTPFAAQVAAEKAGRIVQEMGM 77

Query: 221 KSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           K++ +RVKG    ++     L+   GF         +  + D T   HNGCR PKKRRV
Sbjct: 78  KNLEVRVKGPGPGRESAARSLN-NVGF--------KVTNIADITPIPHNGCRPPKKRRV 127

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BLAST of Cucsa.398050 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 3.4e-156
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120
           FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP
Sbjct: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG
Sbjct: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180

Query: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240
           NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS
Sbjct: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240

Query: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV
Sbjct: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]

BLAST of Cucsa.398050 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.5e-53
Identity = 116/216 (53.70%), Postives = 158/216 (73.15%), Query Frame = 1


Query: 68  SANVGREIVGRGW-KSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPPDTGRNL 127
           S NV R   GR   + +G  G +       + V+ PY++  R +  +       +TGR+ 
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNF-IHSTGQGDDETGRSS 101

Query: 128 KPMNFVRGILEEEERGFFGTPQF--LRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKL 187
           +PM+FVRGI+EE+E+ F G  QF      N+EH+++ VHIKLMRNN+FVTVTD+KGN ++
Sbjct: 102 RPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRI 161

Query: 188 KASAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSW 247
            AS+G    L+GG K+SRY+A++ AE+VGR +R +GLKSVV+RVKGFT+FKKK+QAI+S+
Sbjct: 162 GASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSF 221

Query: 248 RDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           R+GF +SR DQNPIVY+EDTTRR HNGCRLPKKRR+
Sbjct: 222 REGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]

BLAST of Cucsa.398050 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.5e-53
Identity = 116/216 (53.70%), Postives = 158/216 (73.15%), Query Frame = 1


Query: 68  SANVGREIVGRGW-KSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPPDTGRNL 127
           S NV R   GR   + +G  G +       + V+ PY++  R +  +       +TGR+ 
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNF-IHSTGQGDDETGRSS 101

Query: 128 KPMNFVRGILEEEERGFFGTPQF--LRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKL 187
           +PM+FVRGI+EE+E+ F G  QF      N+EH+++ VHIKLMRNN+FVTVTD+KGN ++
Sbjct: 102 RPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRI 161

Query: 188 KASAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSW 247
            AS+G    L+GG K+SRY+A++ AE+VGR +R +GLKSVV+RVKGFT+FKKK+QAI+S+
Sbjct: 162 GASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSF 221

Query: 248 RDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           R+GF +SR DQNPIVY+EDTTRR HNGCRLPKKRR+
Sbjct: 222 REGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]

BLAST of Cucsa.398050 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           + GRN + MNFVRGI+E++ R   G+ QF R + +E N DIVHIKL+RNN+FVTVTD+KG
Sbjct: 40  EMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRYT-VEQNPDIVHIKLIRNNAFVTVTDSKG 99

Query: 181 NTKLKASAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQA 240
           N K+ AS+G    ++GG KLSRY+AD+ AE+VGR +R LGLKSVVM+VKGFT+FKKKKQA
Sbjct: 100 NKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTYFKKKKQA 159

Query: 241 ILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           I+SW++GF  SR D+NPI+Y+EDTTRR HNGCRLP+KRRV
Sbjct: 160 IMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

[Close]

BLAST of Cucsa.398050 vs. TrEMBL
Match: A0A059CKL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02590 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.3e-51
Identity = 103/154 (66.88%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 127 KPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKA 186
           + M++VRGI+EEE +   G  QF R +NME + D VHIKLMRNN+FVTVTD+KGN K+ A
Sbjct: 107 RSMDYVRGIIEEEGKALGGF-QFPRYNNMEQDVDFVHIKLMRNNTFVTVTDSKGNKKIGA 166

Query: 187 SAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSWRD 246
           SAG    ++GG K+SRY+A++ AE+VGR+SR LGLKSVVM+VKGFTFFKKK+QAI+SWR+
Sbjct: 167 SAGCLPEMKGGPKISRYAAEATAEHVGRQSRSLGLKSVVMKVKGFTFFKKKRQAIMSWRE 226

Query: 247 GFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           GFT++R +QNPIVY+ED+TRR HNGCRLPK+RRV
Sbjct: 227 GFTNARGNQNPIVYIEDSTRRPHNGCRLPKRRRV 259

[Close]

BLAST of Cucsa.398050 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 193.0 bits (489), Expect = 2.5e-49
Identity = 117/284 (41.20%), Postives = 163/284 (57.39%), Query Frame = 1


Query: 10  SSLFRSSSLSPAPSFSPSRL-------------SISPFIGSDAPSRMSSLHRSDLTGSLQ 69
           S L  +  +  +P  +PS L              ++ F   +AP    S  RS L  SL 
Sbjct: 55  SGLSNTGRIGSSPEPNPSTLRTFGDMKAGLLNRGVNGFSAPNAPPTFKSSLRSRLPNSLP 114

Query: 70  PHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNR 129
             +QF        N G                 SG + PS      ++ SS    E    
Sbjct: 115 --DQFGQTNPGLPNTG----------------GSGFSAPSLSSYENFTQSSSLLKENSR- 174

Query: 130 PNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVT 189
                +G     ++FVR ++E+E R   G     +  N+E NADI+HIK++RNN+FVTVT
Sbjct: 175 -----SGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 234

Query: 190 DNKGNTKLKASAGRL---EGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKK 249
           D+KGN K KA++G L   +GG K++ Y+AD+ AE +GR ++ +GLKSVV++V GFT F K
Sbjct: 235 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 294

Query: 250 KKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           KK+AI+++RDGFT+SR+DQNPIVY+EDTTR+AHNGCRLP+KRRV
Sbjct: 295 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]

BLAST of Cucsa.398050 vs. TAIR10
Match: ATCG00750.1 (ATCG00750.1 ribosomal protein S11)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-06
Identity = 37/119 (31.09%), Postives = 56/119 (47.06%), Query Frame = 1


Query: 161 IVHIKLMRNNSFVTVTDNKGNTKLKASAGR--LEGGAKLSRYSADSIAEYVGRESRKLGL 220
           ++H++   NN+ VTVTD +G     +SAG     G  + + ++A + A    R     G+
Sbjct: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGM 88

Query: 221 KSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           +   +R+KG    +      +  R G   S        +V D T   HNGCR PKKRRV
Sbjct: 89  QRAEVRIKGPGLGRDAALRAIR-RSGILLS--------FVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cucsa.398050 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus])

HSP 1 Score: 558.9 bits (1439), Expect = 4.9e-156
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120
           FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP
Sbjct: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG
Sbjct: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180

Query: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240
           NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS
Sbjct: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240

Query: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV
Sbjct: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]

BLAST of Cucsa.398050 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 1.6e-130
Identity = 241/281 (85.77%), Postives = 254/281 (90.39%), Query Frame = 1


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLS LFRSSSLS +PSFSPSRLSISPFIGSDAPSR SS   S LTGSLQPHN 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSHLTGSLQPHNH 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120
           FSG      +VGREIVGRGWK+MGVQGPS GLAR +E VS+PYSISSRCYGEYDNRPNPP
Sbjct: 61  FSG------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NMEHNADIVHIKLMRNN+FVTVTDNKG
Sbjct: 121 DTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTVTDNKG 180

Query: 181 NTKLKASAGRLE----GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240
           NTKLKASAGRLE    GGAKLSRYS DSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ
Sbjct: 181 NTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240

Query: 241 AILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           AILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPKKRRV
Sbjct: 241 AILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cucsa.398050 vs. NCBI nr
Match: gi|1009158586|ref|XP_015897366.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 217.6 bits (553), Expect = 2.7e-53
Identity = 114/193 (59.07%), Postives = 144/193 (74.61%), Query Frame = 1


Query: 89  SSGLA-RPSEGVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTP 148
           SSGL+  P   +   +SI S    +++NR N P        MNFVR ++E++ R    + 
Sbjct: 76  SSGLSGTPPYALGFQHSIHSTNEKDFENRRNSPS-------MNFVRSVVEDDGRDMMRSR 135

Query: 149 QFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL---EGGAKLSRYSADS 208
             L   N+E NAD VHIKLMRNN+FVTVTD+KG  K+ AS+G L   +GGAKLSRY+A++
Sbjct: 136 GRLPRYNVEQNADFVHIKLMRNNTFVTVTDSKGKKKIGASSGMLPEMKGGAKLSRYAAEA 195

Query: 209 IAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRR 268
            AE+VGR +R LGLKSVVM+VKGFT+FKKK+QAI+SWR+GFT+SR DQNPIVY+EDTTRR
Sbjct: 196 TAEHVGRMARNLGLKSVVMKVKGFTYFKKKRQAIMSWREGFTNSRGDQNPIVYIEDTTRR 255

Query: 269 AHNGCRLPKKRRV 278
            HNGCRLPKKRR+
Sbjct: 256 PHNGCRLPKKRRI 261

[Close]

BLAST of Cucsa.398050 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina])

HSP 1 Score: 216.1 bits (549), Expect = 7.8e-53
Identity = 116/216 (53.70%), Postives = 158/216 (73.15%), Query Frame = 1


Query: 68  SANVGREIVGRGW-KSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPPDTGRNL 127
           S NV R   GR   + +G  G +       + V+ PY++  R +  +       +TGR+ 
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNF-IHSTGQGDDETGRSS 101

Query: 128 KPMNFVRGILEEEERGFFGTPQF--LRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKL 187
           +PM+FVRGI+EE+E+ F G  QF      N+EH+++ VHIKLMRNN+FVTVTD+KGN ++
Sbjct: 102 RPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRI 161

Query: 188 KASAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSW 247
            AS+G    L+GG K+SRY+A++ AE+VGR +R +GLKSVV+RVKGFT+FKKK+QAI+S+
Sbjct: 162 GASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSF 221

Query: 248 RDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           R+GF +SR DQNPIVY+EDTTRR HNGCRLPKKRR+
Sbjct: 222 REGFANSR-DQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]

BLAST of Cucsa.398050 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera])

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           + GRN + MNFVRGI+E++ R   G+ QF R + +E N DIVHIKL+RNN+FVTVTD+KG
Sbjct: 40  EMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRYT-VEQNPDIVHIKLIRNNAFVTVTDSKG 99

Query: 181 NTKLKASAG---RLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQA 240
           N K+ AS+G    ++GG KLSRY+AD+ AE+VGR +R LGLKSVVM+VKGFT+FKKKKQA
Sbjct: 100 NKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTYFKKKKQA 159

Query: 241 ILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 278
           I+SW++GF  SR D+NPI+Y+EDTTRR HNGCRLP+KRRV
Sbjct: 160 IMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

The following BLAST results are available for this feature:

BLAST of Cucsa.398050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT11_ARATH	4.5e-48	41.20	Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE...	[more]
RT11_MARPO	1.7e-10	33.86	Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2	[more]
RS11_CHLT3	8.2e-10	36.97	30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-7...	[more]
RS11_MARMM	2.4e-09	33.61	30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1	[more]
RS11_NITOC	3.1e-09	36.13	30S ribosomal protein S11 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 118...	[more]

BLAST of Cucsa.398050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVQ8_CUCSA	3.4e-156	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1	[more]
V4U9L5_9ROSI	5.5e-53	53.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1	[more]
A0A067EMW2_CITSI	5.5e-53	53.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1	[more]
F6I489_VITVI	1.6e-52	65.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=...	[more]
A0A059CKL2_EUCGR	2.3e-51	66.88	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02590 PE=3 SV=1	[more]

BLAST of Cucsa.398050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31817.1	2.5e-49	41.20	Ribosomal L18p/L5e family protein	[more]
ATCG00750.1	4.5e-06	31.09	ATCG00750.1 ribosomal protein S11	[more]

BLAST of Cucsa.398050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438783\|ref\|XP_004137167.1\|	4.9e-156	100.00	PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus]	[more]
gi\|659111225\|ref\|XP_008455641.1\|	1.6e-130	85.77	PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo]	[more]
gi\|1009158586\|ref\|XP_015897366.1\|	2.7e-53	59.07	PREDICTED: probable ribosomal protein S11, mitochondrial [Ziziphus jujuba]	[more]
gi\|567906735\|ref\|XP_006445681.1\|	7.8e-53	53.70	hypothetical protein CICLE_v10016360mg [Citrus clementina]	[more]
gi\|731390545\|ref\|XP_010650403.1\|	2.3e-52	65.63	PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001971	Ribosomal_S11
IPR001971	Ribosomal_S11

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.398050.1	Cucsa.398050.1	mRNA
Cucsa.398050.2	Cucsa.398050.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	GENE3D	G3DSA:3.30.420.80		coord: 100..222 score: 2.6
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 72..222 score: 14
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 67..222 score: 7.3
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 106..221 score: 1.6
None	No IPR available	PANTHER	PTHR11759:SF8	30S RIBOSOMAL PROTEIN S11-RELATED	coord: 67..222 score: 7.3
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 104..222 score: 3.01

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.398050	Cla001103	Watermelon (97103) v1	cgywmB715
Cucsa.398050	Csa4G107470	Cucumber (Chinese Long) v2	cgycuB556
Cucsa.398050	MELO3C019016	Melon (DHL92) v3.5.1	cgymeB652
Cucsa.398050	ClCG10G009230	Watermelon (Charleston Gray)	cgywcgB678
Cucsa.398050	CSPI04G09250	Wild cucumber (PI 183967)	cgycpiB585
Cucsa.398050	CmaCh04G003930	Cucurbita maxima (Rimu)	cgycmaB1102
Cucsa.398050	CmoCh04G004180	Cucurbita moschata (Rifu)	cgycmoB1101
Cucsa.398050	Lsi03G009440	Bottle gourd (USVL1VR-Ls)	cgylsiB641
Cucsa.398050	Cp4.1LG01g03090	Cucurbita pepo (Zucchini)	cgycpeB1053
Cucsa.398050	MELO3C019016.2	Melon (DHL92) v3.6.1	cgymedB648
Cucsa.398050	CsaV3_4G009410	Cucumber (Chinese Long) v3	cgycucB604
Cucsa.398050	Cla97C10G192400	Watermelon (97103) v2	cgywmbB680
Cucsa.398050	Bhi11G000852	Wax gourd	cgywgoB792
Cucsa.398050	Carg08067	Silver-seed gourd	carcgyB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.398050	Silver-seed gourd	carcgyB0994
Cucsa.398050	Cucurbita maxima (Rimu)	cgycmaB1101
Cucsa.398050	Cucurbita moschata (Rifu)	cgycmoB1100
Cucsa.398050	Watermelon (97103) v1	cgywmB714
Cucsa.398050	Cucurbita pepo (Zucchini)	cgycpeB1052