CmoCh04G004180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G004180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S11
LocationCmo_Chr04 : 2074939 .. 2077141 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTTCGTTCGACATTCGTATCAACGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCTTCCCTCACCTCTCGTCTCTCTTCCGTTCGTCCTCTCTCTCTCATGGCTCTTCGTTCTCCTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCACGGATCGGAGATCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGTGAATTTTATTTTTTTACTTGCTATCTGATTCGGGAAATTTCGATTATCGGGACTTATAATTTATGTTCTAAATGGGGTTTGGCGTTTTAGGTATAGGAATGGTTTGTTAAGTGATTAAGATGTTTCTTTCTGGATCTATTAAATATGCATTTGCTTTTCACTAAAGAGAGATAAAGTTAAGGATGTCATTTTCTGGCGGAGTGAATTTTTCGGGTGTTTTCTTTTGCGGATCGCAGGCTGTGTGAACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGTCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGACTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGACGACTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCCTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGATGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCCGTGTCCAATCTTTTTACGTGGCTATAGTTTATTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGATAGATATTGGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATTTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAGGAAGGTGTTCCACATGGTTCTGAATAGAACAAGGATGGAGCAAAAAATAACATGTTATCTACAGGTTCCTTAGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGACGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGCAAC

mRNA sequence

ATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTTCGTTCGACATTCGTATCAACGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCTTCCCTCACCTCTCGTCTCTCTTCCGTTCGTCCTCTCTCTCTCATGGCTCTTCGTTCTCCTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCACGGATCGGAGATCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGAACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGTCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGACTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGACGACTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCCTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGATGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCCGTGTCCAATCTTTTTACGTGGCTATAGTTTATTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGATAGATATTGGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTCAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATTTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAGGAAGGTGTTCCACATGGTTCTGAATAGAACAAGGATGGAGCAAAAAATAACATGTTATCTACAGGTTCCTTAGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGACGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGCAAC

Coding sequence (CDS)

ATGCGGAGACTTCCCTTCCCTCACCTCTCGTCTCTCTTCCGTTCGTCCTCTCTCTCTCATGGCTCTTCGTTCTCCTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCACGGATCGGAGATCTCTGGATCCGTTCAACTAGACAGGCAGGATTCAGGCTGTGTGAACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTTGGAAAGCCTTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGTCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGACTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAG
Homology
[Close]
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-51
Identity = 95/164 (57.93%), Postives = 132/164 (80.49%), Query Frame = 1 

Query: 123 RPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVT 182
           + N+ +G     ++FVR ++E++G    G     + PN+E NADI+H+K++RNNTF+TVT
Sbjct: 151 KENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 210

Query: 183 DNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKK 242
           D+KGN K KA+SG L +LKGG K++ Y A+ATAE +GR +K +GLKSVV++V GFT+F K
Sbjct: 211 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 270

Query: 243 KKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           KK+AI+++RDGFT+S+ DQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 271 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-12
Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 1 

Query: 160 NMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVG 219
           NM+    I +++    NT IT+TD  GNTK  +SSG +   KG  + + YAA+ATAE   
Sbjct: 9   NMQKKHCITYIQSTFGNTIITLTDYNGNTKTWSSSGSVG-FKGSRRSTNYAAQATAENAA 68

Query: 220 RESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCR 279
           R + +LG K V +R+KG  Y K+     L         K     I  I D T   HNGCR
Sbjct: 69  RVAIQLGFKFVEVRIKGLGYGKESSLRGL---------KLGGLIITKIRDVTPTPHNGCR 125

Query: 280 LPKQRRV 287
            PK+RRV
Sbjct: 129 PPKKRRV 125

[Close]
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-11
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 161 MEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGR 220
           +E  + IVH++   NNT IT+TD +GNT+   S+G L   K   K + YA+ A AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 221 ESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRL 280
           ++   G +++++++KG  Y KK               ++    I  I++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRP 128

Query: 281 PKQRRV 287
           PK+RRV
Sbjct: 133 PKKRRV 128

[Close]
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLG 226
           IVHV    NNT +T+TD +GNT   +SSG +   KG  K + YAA+  AE   +++K+ G
Sbjct: 20  IVHVNSSFNNTMVTITDAQGNTISWSSSGVMN-FKGSRKSTPYAAQMAAEDAAKKAKEHG 79

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286
           L++V +RV+G    ++     L    G T        +  I DTT   HNGCR PK+RRV
Sbjct: 80  LQTVEVRVRGPGSGRESALRALQ-AAGLT--------VTAINDTTPIPHNGCRPPKRRRV 129

[Close]
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match: RS11_ARCB4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-10
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1 

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLG 226
           IVH+    NNT +TVTDN GN    +S+G L   KG  K + +AA+A  E    ++ + G
Sbjct: 20  IVHIAASFNNTMVTVTDNAGNAIAWSSAGNLG-FKGSKKSTPFAAQAAVEDAMNKAMEHG 79

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286
           +K+V ++++G    +      +   DG          + +++D T  AHNGCR PK+RRV
Sbjct: 80  IKNVGIKIQGPGSGRDTAVKAVGSMDGVR--------VTWLKDVTPLAHNGCRPPKRRRV 130

[Close]
BLAST of CmoCh04G004180 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.8e-107
Identity = 211/287 (73.52%), Postives = 235/287 (81.88%), Query Frame = 1 

Query: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60
           M +L   HLSSLFRSSSLS   SFS SRLSISPF G+DA S MSSLH    S+++GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLH---RSDLTGSLQP 60

Query: 61  DRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR WK++G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKAS+GRLE   GG KLSRY+A++ AEYVGRES+KLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]
BLAST of CmoCh04G004180 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.7e-62
Identity = 129/215 (60.00%), Postives = 166/215 (77.21%), Query Frame = 1 

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G+ + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]
BLAST of CmoCh04G004180 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.7e-62
Identity = 129/215 (60.00%), Postives = 166/215 (77.21%), Query Frame = 1 

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G+ + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]
BLAST of CmoCh04G004180 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.4e-58
Identity = 113/167 (67.66%), Postives = 141/167 (84.43%), Query Frame = 1 

Query: 120 YDGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+D  +  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ ASSG L E+KGGPKLSRYAA+ATAE+VGR ++ LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  S+ D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

[Close]
BLAST of CmoCh04G004180 vs. TrEMBL
Match: M5VQ17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.6e-58
Identity = 115/160 (71.88%), Postives = 138/160 (86.25%), Query Frame = 1 

Query: 127 DTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKG 186
           +  RN +SMNFVRGILEEDG + +G SQFPR  NME NADIVH+KLM+NNTF+TVTD+KG
Sbjct: 51  NVSRNSRSMNFVRGILEEDGKENIGFSQFPRY-NMEQNADIVHIKLMKNNTFVTVTDSKG 110

Query: 187 NTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQA 246
             KL AS+G L  +KGGPKLS+YAAEATAE+VGR ++  GLKSVV++VKGFTYFKKK+QA
Sbjct: 111 KKKLGASAGSLPGMKGGPKLSKYAAEATAEHVGRMARNFGLKSVVVKVKGFTYFKKKRQA 170

Query: 247 ILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+SW++GFT+SK   NPIVYIEDTTR+ HNGCRLPK+RRV
Sbjct: 171 IVSWKEGFTNSKVGLNPIVYIEDTTRKPHNGCRLPKKRRV 209

[Close]
BLAST of CmoCh04G004180 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 95/164 (57.93%), Postives = 132/164 (80.49%), Query Frame = 1 

Query: 123 RPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVT 182
           + N+ +G     ++FVR ++E++G    G     + PN+E NADI+H+K++RNNTF+TVT
Sbjct: 151 KENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 210

Query: 183 DNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKK 242
           D+KGN K KA+SG L +LKGG K++ Y A+ATAE +GR +K +GLKSVV++V GFT+F K
Sbjct: 211 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 270

Query: 243 KKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           KK+AI+++RDGFT+S+ DQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 271 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]
BLAST of CmoCh04G004180 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 2.6e-107
Identity = 211/287 (73.52%), Postives = 235/287 (81.88%), Query Frame = 1 

Query: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60
           M +L   HLSSLFRSSSLS   SFS SRLSISPF G+DA S MSSLH    S+++GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLH---RSDLTGSLQP 60

Query: 61  DRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR WK++G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKAS+GRLE   GG KLSRY+A++ AEYVGRES+KLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]
BLAST of CmoCh04G004180 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 8.5e-103
Identity = 207/288 (71.88%), Postives = 229/288 (79.51%), Query Frame = 1 

Query: 1   MRRLPFPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSHGSEISGSVQL 60
           M +L   HLS LFRSSSLS   SFS SRLSISPF G+DA S  SS   SH   ++GS+Q 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSH---LTGSLQP 60

Query: 61  DRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
               SG          +VGREIVGR WKA+G QGP WGLARS+E+VSVPYS SSRCY  Y
Sbjct: 61  HNHFSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K++NFVRGILEED   F    Q+ RP NMEHNADIVH+KLMRNN F+
Sbjct: 121 DNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGG-PKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFT 240
           TVTDNKGNTKLKAS+GRLEELKGG  KLSRY+ ++ AEYVGRES+KLGLKSVVMRVKGFT
Sbjct: 181 TVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFT 240

Query: 241 YFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +FKKKKQAILSWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 241 FFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]
BLAST of CmoCh04G004180 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina])

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 129/215 (60.00%), Postives = 166/215 (77.21%), Query Frame = 1 

Query: 75  SVNVGREIVGRAW-KALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTGRNFK 134
           S NV R   GR+  + LG  G         +NV+ PY+   R ++H  G+ + +TGR+ +
Sbjct: 42  SWNVARGESGRSLPRVLGNLGMNLCAVSVEQNVAAPYALGFRNFIHSTGQGDDETGRSSR 101

Query: 135 SMNFVRGILEEDGMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKGNTKLK 194
            M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KGN ++ 
Sbjct: 102 PMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIG 161

Query: 195 ASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILSWR 254
           ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QAI+S+R
Sbjct: 162 ASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFR 221

Query: 255 DGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 222 EGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

[Close]
BLAST of CmoCh04G004180 vs. NCBI nr
Match: gi|645263052|ref|XP_008237050.1| (PREDICTED: ribosomal protein S11, mitochondrial [Prunus mume])

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 116/157 (73.89%), Postives = 136/157 (86.62%), Query Frame = 1 

Query: 130 RNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNTK 189
           RN +SMNFVRGILEEDG D  G SQFPR  NME NADIVH+KLM+NNTF+TVTD+KGN K
Sbjct: 54  RNSRSMNFVRGILEEDGKDNFGFSQFPRY-NMEQNADIVHLKLMKNNTFVTVTDSKGNKK 113

Query: 190 LKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILS 249
           L AS+G L  +KGGPKLS+YAAE TAE+VGR ++  GLKSVV++VKGFTYFKKK+QAI+S
Sbjct: 114 LGASAGSLPGMKGGPKLSKYAAETTAEHVGRMARNFGLKSVVVKVKGFTYFKKKRQAIVS 173

Query: 250 WRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           W++GFT+SK   NPIVYIEDTTR+ HNGCRLPK+RRV
Sbjct: 174 WKEGFTNSKVGLNPIVYIEDTTRKPHNGCRLPKKRRV 209

[Close]
BLAST of CmoCh04G004180 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera])

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 113/167 (67.66%), Postives = 141/167 (84.43%), Query Frame = 1 

Query: 120 YDGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+D  +  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ ASSG L E+KGGPKLSRYAA+ATAE+VGR ++ LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  S+ D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

The following BLAST results are available for this feature:
BLAST of CmoCh04G004180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT11_ARATH2.6e-5157.93Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE... [more]
RT11_MARPO4.1e-1240.16Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2[more]
RT11_PROWI3.4e-1134.92Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=... [more]
RS11_HYPNA1.0e-1040.0030S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE... [more]
RS11_ARCB45.0e-1035.0030S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV... [more]
BLAST of CmoCh04G004180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVQ8_CUCSA1.8e-10773.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1[more]
A0A067EMW2_CITSI8.7e-6260.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1[more]
V4U9L5_9ROSI8.7e-6260.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1[more]
F6I489_VITVI4.4e-5867.66Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=... [more]
M5VQ17_PRUPE7.6e-5871.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1[more]
BLAST of CmoCh04G004180 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31817.11.5e-5257.93 Ribosomal L18p/L5e family protein[more]
BLAST of CmoCh04G004180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438783|ref|XP_004137167.1|2.6e-10773.52PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus][more]
gi|659111225|ref|XP_008455641.1|8.5e-10371.88PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo][more]
gi|567906735|ref|XP_006445681.1|1.2e-6160.00hypothetical protein CICLE_v10016360mg [Citrus clementina][more]
gi|645263052|ref|XP_008237050.1|6.4e-5873.89PREDICTED: ribosomal protein S11, mitochondrial [Prunus mume][more]
gi|731390545|ref|XP_010650403.1|6.4e-5867.66PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004180.1CmoCh04G004180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 161..286
score: 7.8
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 133..286
score: 15
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 126..286
score: 4.2
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 167..285
score: 7.5
NoneNo IPR availablePANTHERPTHR11759:SF830S RIBOSOMAL PROTEIN S11-RELATEDcoord: 126..286
score: 4.2
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 165..286
score: 1.24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G004180Cucsa.398050Cucumber (Gy14) v1cgycmoB1101
CmoCh04G004180CmaCh04G003930Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G004180Cla001103Watermelon (97103) v1cmowmB654
CmoCh04G004180Csa4G107470Cucumber (Chinese Long) v2cmocuB702
CmoCh04G004180MELO3C019016Melon (DHL92) v3.5.1cmomeB696
CmoCh04G004180ClCG10G009230Watermelon (Charleston Gray)cmowcgB610
CmoCh04G004180CSPI04G09250Wild cucumber (PI 183967)cmocpiB710
CmoCh04G004180Lsi03G009440Bottle gourd (USVL1VR-Ls)cmolsiB646
CmoCh04G004180Cp4.1LG01g03090Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G004180MELO3C019016.2Melon (DHL92) v3.6.1cmomedB790
CmoCh04G004180CsaV3_4G009410Cucumber (Chinese Long) v3cmocucB0830
CmoCh04G004180Cla97C10G192400Watermelon (97103) v2cmowmbB684
CmoCh04G004180Bhi11G000852Wax gourdcmowgoB0810
CmoCh04G004180CsGy4G008990Cucumber (Gy14) v2cgybcmoB518
CmoCh04G004180Carg08067Silver-seed gourdcarcmoB0514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004180Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004180Cucurbita moschata (Rifu)cmocmoB289
CmoCh04G004180Cucumber (Gy14) v1cgycmoB0197
CmoCh04G004180Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004180Wild cucumber (PI 183967)cmocpiB708
CmoCh04G004180Wild cucumber (PI 183967)cmocpiB720
CmoCh04G004180Cucumber (Chinese Long) v2cmocuB700
CmoCh04G004180Cucumber (Chinese Long) v2cmocuB710
CmoCh04G004180Melon (DHL92) v3.5.1cmomeB694
CmoCh04G004180Watermelon (97103) v1cmowmB648
CmoCh04G004180Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004180Cucurbita pepo (Zucchini)cmocpeB671
CmoCh04G004180Cucumber (Gy14) v2cgybcmoB516
CmoCh04G004180Cucumber (Gy14) v2cgybcmoB528
CmoCh04G004180Melon (DHL92) v3.6.1cmomedB788
CmoCh04G004180Silver-seed gourdcarcmoB0403
CmoCh04G004180Silver-seed gourdcarcmoB1177
CmoCh04G004180Silver-seed gourdcarcmoB1178
CmoCh04G004180Cucumber (Chinese Long) v3cmocucB0841
CmoCh04G004180Watermelon (97103) v2cmowmbB749