Cp4.1LG01g02380 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g02380
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein 7, putative
LocationCp4.1LG01 : 2421941 .. 2422495 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGTAAGAGGGTGTTCTTCAGTTCACAGGCATTGGGAGGCCATCAAAATGCCCACAAGAGAGAGAGGAGTGCAGCCAGAAGGCACCAAGCCCACAAGATGATGACCCTGTTTGGTCTGCCAATCCATAATTCTATGATTAGATCACTTGGTGTTCAGCCACATTCACTTGTGCACAAACCAGGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

mRNA sequence

ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

Coding sequence (CDS)

ATGTCGATAAACAGTAACGGTAACGGACAAGCTGATTCGAGTGAAGAAGAACAAGAAGCAACAGACCAACCTGATGGCGTAGCAGCTTTGGAGTGGCTGGACTTGAGCTTGGGAAGGAAGAACAAGCAGCTTTTAGCTGAATCACAAAGCTCTGCAGCAGCTTCAACCAAGACTTTTTCATGCAACTTCTGCAGGGAAGATACTGTTCTAGCAGCAAGATTTAATCATGTCAAAACTGGTTCATGGGCACCTTTCATGTTGGGGGATGCCATGGACTTGATGTGGCCGGGGAGCTTCCGCTTCACTCAACATCGAATTCTCGACAAGCCATCACCAATTGAACCGTTCCATCTCGATCTGAATCTTCGACTTTAA

Protein sequence

MSINSNGNGQADSSEEEQEATDQPDGVAALEWLDLSLGRKNKQLLAESQSSAAASTKTFSCNFCREDTVLAARFNHVKTGSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLNLRL
Homology
[Close]
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match: A0A0A0L948_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199020 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTGSWA-PFMLGDAMDLMWPGSFRFTQHRILDKP-----SPIEPFHL 124
           REDT + ARFNHVK GSWA PFMLGDAMD MWPGSFRF QH+IL +P      P+EPF L
Sbjct: 140 REDTAVVARFNHVKNGSWAAPFMLGDAMDFMWPGSFRFAQHQILPEPPPPREPPMEPFKL 199

[Close]
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match: A0A067LB32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16276 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKT----GSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDL 124
           RE+T ++ARFN         +W PFML DAMDLMWPGSFR    +      P E   LDL
Sbjct: 134 REETTVSARFNEASNMRFDTTWMPFMLEDAMDLMWPGSFRLNPQQ---SEPPSESLKLDL 193

[Close]
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match: B9SNA3_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0174270 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 33/60 (55.00%), Postives = 35/60 (58.33%), Query Frame = 1 

Query: 68  TVLAARFNHVKTG---SWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLNLRL 125
           T +A RFN V  G   +  PF L DAMDLMWPGSFRF          P EP  LDLNLRL
Sbjct: 148 TTVAPRFNEVNGGFGMACLPFTLEDAMDLMWPGSFRFDAQ---PPEPPSEPLELDLNLRL 204

[Close]
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match: V4S6V1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029351mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTG---SWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLN 124
           R+   + ARFN   TG   +W P++L +A D+MWPGSFR      L +P P EP  LDLN
Sbjct: 128 RDGAGVGARFNDADTGFGMAWTPYVLEEATDVMWPGSFRLNLQ--LPEPPP-EPLKLDLN 187

[Close]
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match: A0A067D423_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043322mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTG---SWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLN 124
           R+   + ARFN   TG   +W P++L +A D+MWPGSFR      L +P P EP  LDLN
Sbjct: 128 RDGAGVGARFNDADTGFGMAWTPYVLEEATDVMWPGSFRVNLQ--LPEPPP-EPLKLDLN 187

[Close]
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: gi|778679995|ref|XP_011651233.1| (PREDICTED: zinc finger protein 7-like [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 8.1e-18
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTGSWA-PFMLGDAMDLMWPGSFRFTQHRILDKP-----SPIEPFHL 124
           REDT + ARFNHVK GSWA PFMLGDAMD MWPGSFRF QH+IL +P      P+EPF L
Sbjct: 140 REDTAVVARFNHVKNGSWAAPFMLGDAMDFMWPGSFRFAQHQILPEPPPPREPPMEPFKL 199

[Close]
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: gi|659112461|ref|XP_008456235.1| (PREDICTED: zinc finger protein 7-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTGSWA-PFMLGDAMDLMWPGSFRFTQHRILDKP-----SPIEPFHL 124
           REDT + ARFNHVK GSWA PFMLGDA D MWPGSFRF QH+IL +P      P+EPF L
Sbjct: 144 REDTAVVARFNHVKNGSWAAPFMLGDATDFMWPGSFRFAQHQILPEPPPPREPPMEPFKL 203

[Close]
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: gi|1009150074|ref|XP_015892820.1| (PREDICTED: zinc finger protein 4-like [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTGS---WAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLN 124
           RE T + ARFN   TG    W PF L DAMDLMWPGSF         +P P++   LDLN
Sbjct: 139 REGTTIVARFNDASTGFGMVWTPFTLEDAMDLMWPGSFHLDPQVPEPQPEPLK-LELDLN 198

[Close]
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: gi|1009170812|ref|XP_015866399.1| (PREDICTED: zinc finger protein 4-like [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKTGS---WAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDLN 124
           RE T + ARFN   TG    W PF L DAMDLMWPGSF         +P P++   LDLN
Sbjct: 133 REGTTIVARFNDASTGFGMVWTPFTLEDAMDLMWPGSFHLDPQVPEPQPEPLK-LELDLN 192

[Close]
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match: gi|802550598|ref|XP_012093067.1| (PREDICTED: zinc finger protein 4-like [Jatropha curcas])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1 

Query: 65  REDTVLAARFNHVKT----GSWAPFMLGDAMDLMWPGSFRFTQHRILDKPSPIEPFHLDL 124
           RE+T ++ARFN         +W PFML DAMDLMWPGSFR    +      P E   LDL
Sbjct: 134 REETTVSARFNEASNMRFDTTWMPFMLEDAMDLMWPGSFRLNPQQ---SEPPSESLKLDL 193

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g02380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L948_CUCSA5.7e-1871.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199020 PE=4 SV=1[more]
A0A067LB32_JATCU2.6e-0750.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16276 PE=4 SV=1[more]
B9SNA3_RICCO2.9e-0655.00Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0174270 PE=4 SV=1[more]
V4S6V1_9ROSI5.0e-0649.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029351mg PE=4 SV=1[more]
A0A067D423_CITSI6.5e-0649.21Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043322mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g02380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679995|ref|XP_011651233.1|8.1e-1871.21PREDICTED: zinc finger protein 7-like [Cucumis sativus][more]
gi|659112461|ref|XP_008456235.1|1.1e-1771.21PREDICTED: zinc finger protein 7-like [Cucumis melo][more]
gi|1009150074|ref|XP_015892820.1|2.2e-0752.38PREDICTED: zinc finger protein 4-like [Ziziphus jujuba][more]
gi|1009170812|ref|XP_015866399.1|2.2e-0752.38PREDICTED: zinc finger protein 4-like [Ziziphus jujuba][more]
gi|802550598|ref|XP_012093067.1|3.8e-0750.00PREDICTED: zinc finger protein 4-like [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02380.1Cp4.1LG01g02380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g02380CmaCh04G004660Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g02380CmaCh16G003360Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g02380CmoCh04G004970Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g02380Cla013107Watermelon (97103) v1cpewmB433
Cp4.1LG01g02380MELO3C019555Melon (DHL92) v3.5.1cpemeB412
Cp4.1LG01g02380Lsi05G002460Bottle gourd (USVL1VR-Ls)cpelsiB369
Cp4.1LG01g02380MELO3C019555.2Melon (DHL92) v3.6.1cpemedB481
Cp4.1LG01g02380CsaV3_3G018110Cucumber (Chinese Long) v3cpecucB0484
Cp4.1LG01g02380Bhi01G001291Wax gourdcpewgoB0517
Cp4.1LG01g02380Carg19673Silver-seed gourdcarcpeB0408
Cp4.1LG01g02380Carg08136Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g02380Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g02380Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG01g02380Cucumber (Gy14) v1cgycpeB0218
Cp4.1LG01g02380Cucumber (Gy14) v1cgycpeB0599
Cp4.1LG01g02380Cucurbita maxima (Rimu)cmacpeB136
Cp4.1LG01g02380Cucurbita moschata (Rifu)cmocpeB114
Cp4.1LG01g02380Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g02380Cucurbita moschata (Rifu)cmocpeB815
Cp4.1LG01g02380Wild cucumber (PI 183967)cpecpiB388
Cp4.1LG01g02380Wild cucumber (PI 183967)cpecpiB470
Cp4.1LG01g02380Cucumber (Chinese Long) v2cpecuB389
Cp4.1LG01g02380Cucumber (Chinese Long) v2cpecuB468
Cp4.1LG01g02380Cucumber (Chinese Long) v2cpecuB470
Cp4.1LG01g02380Bottle gourd (USVL1VR-Ls)cpelsiB325
Cp4.1LG01g02380Bottle gourd (USVL1VR-Ls)cpelsiB348
Cp4.1LG01g02380Watermelon (Charleston Gray)cpewcgB378
Cp4.1LG01g02380Watermelon (Charleston Gray)cpewcgB394
Cp4.1LG01g02380Watermelon (97103) v1cpewmB453
Cp4.1LG01g02380Melon (DHL92) v3.5.1cpemeB394
Cp4.1LG01g02380Melon (DHL92) v3.5.1cpemeB435
Cp4.1LG01g02380Cucumber (Gy14) v2cgybcpeB213
Cp4.1LG01g02380Cucumber (Gy14) v2cgybcpeB362
Cp4.1LG01g02380Cucumber (Gy14) v2cgybcpeB515
Cp4.1LG01g02380Cucumber (Gy14) v2cgybcpeB805
Cp4.1LG01g02380Melon (DHL92) v3.6.1cpemedB457
Cp4.1LG01g02380Melon (DHL92) v3.6.1cpemedB472
Cp4.1LG01g02380Melon (DHL92) v3.6.1cpemedB492
Cp4.1LG01g02380Melon (DHL92) v3.6.1cpemedB507
Cp4.1LG01g02380Cucumber (Chinese Long) v3cpecucB0481
Cp4.1LG01g02380Cucumber (Chinese Long) v3cpecucB0511
Cp4.1LG01g02380Cucumber (Chinese Long) v3cpecucB0576
Cp4.1LG01g02380Cucumber (Chinese Long) v3cpecucB0582
Cp4.1LG01g02380Wax gourdcpewgoB0539
Cp4.1LG01g02380Wax gourdcpewgoB0547
Cp4.1LG01g02380Wax gourdcpewgoB0580