MELO3C019555.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019555.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	zinc finger protein 7-like
Location	chr06 : 13033280 .. 13033567 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

mRNA sequence

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

Coding sequence (CDS)

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

Protein sequence

MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL

Homology

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BLAST of MELO3C019555.2 vs. NCBI nr
Match: XP_008456235.1 (PREDICTED: zinc finger protein 7-like [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM
Sbjct: 115 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 174

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL
Sbjct: 175 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 209

[Close]

BLAST of MELO3C019555.2 vs. NCBI nr
Match: XP_011651233.1 (PREDICTED: zinc finger protein 7-like [Cucumis sativus] >KGN57489.1 hypothetical protein Csa_3G199020 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 8.6e-48
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDA DFM
Sbjct: 111 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDAMDFM 170

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDL+LRL
Sbjct: 171 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLSLRL 205

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BLAST of MELO3C019555.2 vs. NCBI nr
Match: XP_022922826.1 (zinc finger protein 4-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHK  REDTA+VARFNHVK+GSW APFMLGDA D  
Sbjct: 108 MMTLLGLPIHNSMVRSLGVQPHSLVHKTSREDTAIVARFNHVKSGSW-APFMLGDAMDLR 167

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRF QHQ+LPE PP REP MEPFKLDLNLRL
Sbjct: 168 WPGSFRFTQHQVLPESPPLREPQMEPFKLDLNLRL 201

[Close]

BLAST of MELO3C019555.2 vs. NCBI nr
Match: XP_023551737.1 (zinc finger protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHK  REDTA+VARFNHVK+GSW APFMLGDA D  
Sbjct: 104 MMTLLGLPIHNSMVRSLGVQPHSLVHKTSREDTAIVARFNHVKSGSW-APFMLGDAMDLR 163

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRF QHQ+LPE PP REP MEPFKLDLNLRL
Sbjct: 164 WPGSFRFTQHQVLPESPPLREPQMEPFKLDLNLRL 197

[Close]

BLAST of MELO3C019555.2 vs. NCBI nr
Match: XP_022149328.1 (zinc finger protein 4-like [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSM+RSLGVQPHSLVHKPGREDTA+VARFNHVK GSW  PFMLGDA D M
Sbjct: 102 MMTLLGLPIHNSMIRSLGVQPHSLVHKPGREDTAIVARFNHVKTGSW-TPFMLGDAMDLM 161

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRF QHQILPEPPP  E P EPF LDLNLRL
Sbjct: 162 WPGSFRFTQHQILPEPPP--ETPSEPFMLDLNLRL 193

[Close]

BLAST of MELO3C019555.2 vs. TrEMBL
Match: tr|A0A1S3C410|A0A1S3C410_CUCME (zinc finger protein 7-like OS=Cucumis melo OX=3656 GN=LOC103496238 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM
Sbjct: 115 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 174

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL
Sbjct: 175 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 209

[Close]

BLAST of MELO3C019555.2 vs. TrEMBL
Match: tr|A0A0A0L948|A0A0A0L948_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199020 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.7e-48
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDA DFM
Sbjct: 111 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDAMDFM 170

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDL+LRL
Sbjct: 171 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLSLRL 205

[Close]

BLAST of MELO3C019555.2 vs. TrEMBL
Match: tr|A0A2I4F7Z6|A0A2I4F7Z6_9ROSI (zinc finger protein 4-like OS=Juglans regia OX=51240 GN=LOC108996358 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.9e-21
Identity = 58/97 (59.79%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAA--PFMLGDATD 60
           MM ++GLPI+ SM RSLGV+PHSLVHKP RE +A+VARF   K G   A  PF + D TD
Sbjct: 103 MMAMMGLPINTSMARSLGVRPHSLVHKPSRELSAIVARFTDAKTGFGMARMPFTMEDPTD 162

Query: 61  FMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
            MWPGSFR          P P EPP EP KLDLNLRL
Sbjct: 163 LMWPGSFRM--------NPKPSEPPSEPHKLDLNLRL 191

[Close]

BLAST of MELO3C019555.2 vs. TrEMBL
Match: tr|A0A2H5P8H4|A0A2H5P8H4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_113370 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRV--NLQLPEPPP------EPLKLDLNLRL 187

[Close]

BLAST of MELO3C019555.2 vs. TrEMBL
Match: tr|A0A067D423|A0A067D423_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043322mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRV--NLQLPEPPP------EPLKLDLNLRL 187

The following BLAST results are available for this feature:

BLAST of MELO3C019555.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456235.1	4.6e-49	100.00	PREDICTED: zinc finger protein 7-like [Cucumis melo]	[more]
XP_011651233.1	8.6e-48	97.89	PREDICTED: zinc finger protein 7-like [Cucumis sativus] >KGN57489.1 hypothetical...	[more]
XP_022922826.1	3.3e-39	86.32	zinc finger protein 4-like [Cucurbita moschata]	[more]
XP_023551737.1	3.3e-39	86.32	zinc finger protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022149328.1	7.3e-39	86.32	zinc finger protein 4-like [Momordica charantia]	[more]

BLAST of MELO3C019555.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C019555.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019555.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C410\|A0A1S3C410_CUCME	3.0e-49	100.00	zinc finger protein 7-like OS=Cucumis melo OX=3656 GN=LOC103496238 PE=4 SV=1	[more]
tr\|A0A0A0L948\|A0A0A0L948_CUCSA	5.7e-48	97.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199020 PE=4 SV=1	[more]
tr\|A0A2I4F7Z6\|A0A2I4F7Z6_9ROSI	5.9e-21	59.79	zinc finger protein 4-like OS=Juglans regia OX=51240 GN=LOC108996358 PE=4 SV=1	[more]
tr\|A0A2H5P8H4\|A0A2H5P8H4_CITUN	5.0e-20	58.16	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_113370 PE=4 SV=1	[more]
tr\|A0A067D423\|A0A067D423_CITSI	5.0e-20	58.16	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043322mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019555.2.1	MELO3C019555.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR26374:SF228	SUBFAMILY NOT NAMED	coord: 1..95
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 1..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019555.2	Csa3G199020	Cucumber (Chinese Long) v2	cumedB238
MELO3C019555.2	CSPI03G18060	Wild cucumber (PI 183967)	cpimedB239
MELO3C019555.2	Cucsa.108840	Cucumber (Gy14) v1	cgymedB144
MELO3C019555.2	CmaCh16G003360	Cucurbita maxima (Rimu)	cmamedB346
MELO3C019555.2	CmaCh04G004660	Cucurbita maxima (Rimu)	cmamedB777
MELO3C019555.2	CmoCh04G004970	Cucurbita moschata (Rifu)	cmomedB774
MELO3C019555.2	Lsi05G002460	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C019555.2	Cp4.1LG01g02380	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C019555.2	Cla013107	Watermelon (97103) v1	medwmB448
MELO3C019555.2	ClCG05G010390	Watermelon (Charleston Gray)	medwcgB417
MELO3C019555.2	Cla97C05G092750	Watermelon (97103) v2	medwmbB424
MELO3C019555.2	Bhi01G001291	Wax gourd	medwgoB531
MELO3C019555.2	Carg08136	Silver-seed gourd	carmedB0384
MELO3C019555.2	Carg19673	Silver-seed gourd	carmedB0307
MELO3C019555.2	CsaV3_3G018110	Cucumber (Chinese Long) v3	cucmedB246

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019555.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C019555.2	Cucumber (Gy14) v1	cgymedB379
MELO3C019555.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C019555.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C019555.2	Melon (DHL92) v3.6.1	medmedB091
MELO3C019555.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C019555.2	Watermelon (97103) v1	medwmB472