MELO3C019555 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019555
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Zinc finger protein 1
Location	chr6 : 11956237 .. 11956524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

mRNA sequence

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

Coding sequence (CDS)

ATGATGACTTTGCTTGGTCTTCCAATTCATAATTCTATGGTTAGATCACTTGGTGTTCAACCACATTCACTTGTGCACAAACCAGGCAGGGAAGACACTGCAGTTGTAGCAAGATTTAATCATGTTAAAAATGGTTCGTGGGCAGCACCTTTCATGTTGGGGGATGCCACGGACTTTATGTGGCCAGGAAGCTTCCGTTTCGCTCAACATCAGATTCTCCCAGAGCCACCACCACCACGAGAACCACCAATGGAACCATTCAAGCTCGACCTGAATCTCCGACTTTAA

Protein sequence

MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL*

Homology

[Close]

BLAST of MELO3C019555 vs. TrEMBL
Match: A0A0A0L948_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199020 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDA DFM
Sbjct: 111 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDAMDFM 170

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDL+LRL
Sbjct: 171 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLSLRL 205

[Close]

BLAST of MELO3C019555 vs. TrEMBL
Match: V4S6V1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029351mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRL--NLQLPEPPP------EPLKLDLNLRL 187

[Close]

BLAST of MELO3C019555 vs. TrEMBL
Match: A0A067D423_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043322mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRV--NLQLPEPPP------EPLKLDLNLRL 187

[Close]

BLAST of MELO3C019555 vs. TrEMBL
Match: A0A067LB32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16276 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKN----GSWAAPFMLGDA 60
           MM ++G P++ S+ RSLGV+PH+LVHKP RE+T V ARFN   N     +W  PFML DA
Sbjct: 105 MMAMMGFPMNTSINRSLGVRPHALVHKPSREETTVSARFNEASNMRFDTTW-MPFMLEDA 164

Query: 61  TDFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
            D MWPGSFR          P   EPP E  KLDLNL+L
Sbjct: 165 MDLMWPGSFRL--------NPQQSEPPSESLKLDLNLKL 194

[Close]

BLAST of MELO3C019555 vs. TrEMBL
Match: B9GHU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30590g PE=4 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+++ M RSLGV+PH+LVHKP R+ TA+  RFN    G   SW  PF + D T
Sbjct: 158 MMTVMGLPVNSPMARSLGVRPHTLVHKPNRDGTAIAGRFNEASPGFDMSW-MPFTVDDTT 217

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D  WPGSFR  Q         P E   EP KLDLNLRL
Sbjct: 218 DLTWPGSFRLDQ---------PPETSSEPLKLDLNLRL 245

[Close]

BLAST of MELO3C019555 vs. NCBI nr
Match: gi|659112461|ref|XP_008456235.1| (PREDICTED: zinc finger protein 7-like [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM
Sbjct: 115 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 174

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL
Sbjct: 175 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 209

[Close]

BLAST of MELO3C019555 vs. NCBI nr
Match: gi|778679995|ref|XP_011651233.1| (PREDICTED: zinc finger protein 7-like [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-48
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDATDFM 60
           MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDA DFM
Sbjct: 111 MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNGSWAAPFMLGDAMDFM 170

Query: 61  WPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           WPGSFRFAQHQILPEPPPPREPPMEPFKLDL+LRL
Sbjct: 171 WPGSFRFAQHQILPEPPPPREPPMEPFKLDLSLRL 205

[Close]

BLAST of MELO3C019555 vs. NCBI nr
Match: gi|567860456|ref|XP_006422882.1| (hypothetical protein CICLE_v10029351mg [Citrus clementina])

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRL--NLQLPEPPP------EPLKLDLNLRL 187

[Close]

BLAST of MELO3C019555 vs. NCBI nr
Match: gi|568867281|ref|XP_006486968.1| (PREDICTED: zinc finger protein 4 [Citrus sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKNG---SWAAPFMLGDAT 60
           MMT++GLP+H +MVRSLGV+ HSLVHKP R+   V ARFN    G   +W  P++L +AT
Sbjct: 99  MMTMMGLPVHTNMVRSLGVRAHSLVHKPSRDGAGVGARFNDADTGFGMAW-TPYVLEEAT 158

Query: 61  DFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
           D MWPGSFR   +  LPEPPP      EP KLDLNLRL
Sbjct: 159 DVMWPGSFRV--NLQLPEPPP------EPLKLDLNLRL 187

[Close]

BLAST of MELO3C019555 vs. NCBI nr
Match: gi|802550598|ref|XP_012093067.1| (PREDICTED: zinc finger protein 4-like [Jatropha curcas])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 1   MMTLLGLPIHNSMVRSLGVQPHSLVHKPGREDTAVVARFNHVKN----GSWAAPFMLGDA 60
           MM ++G P++ S+ RSLGV+PH+LVHKP RE+T V ARFN   N     +W  PFML DA
Sbjct: 105 MMAMMGFPMNTSINRSLGVRPHALVHKPSREETTVSARFNEASNMRFDTTW-MPFMLEDA 164

Query: 61  TDFMWPGSFRFAQHQILPEPPPPREPPMEPFKLDLNLRL 96
            D MWPGSFR          P   EPP E  KLDLNL+L
Sbjct: 165 MDLMWPGSFRL--------NPQQSEPPSESLKLDLNLKL 194

The following BLAST results are available for this feature:

BLAST of MELO3C019555 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L948_CUCSA	1.4e-48	97.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199020 PE=4 SV=1	[more]
V4S6V1_9ROSI	2.1e-20	58.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029351mg PE=4 SV=1	[more]
A0A067D423_CITSI	2.8e-20	58.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043322mg PE=4 SV=1	[more]
A0A067LB32_JATCU	2.6e-18	53.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16276 PE=4 SV=1	[more]
B9GHU0_POPTR	2.6e-18	53.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30590g PE=4 SV=2	[more]

BLAST of MELO3C019555 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112461\|ref\|XP_008456235.1\|	1.1e-49	100.00	PREDICTED: zinc finger protein 7-like [Cucumis melo]	[more]
gi\|778679995\|ref\|XP_011651233.1\|	2.0e-48	97.89	PREDICTED: zinc finger protein 7-like [Cucumis sativus]	[more]
gi\|567860456\|ref\|XP_006422882.1\|	3.0e-20	58.16	hypothetical protein CICLE_v10029351mg [Citrus clementina]	[more]
gi\|568867281\|ref\|XP_006486968.1\|	4.0e-20	58.16	PREDICTED: zinc finger protein 4 [Citrus sinensis]	[more]
gi\|802550598\|ref\|XP_012093067.1\|	3.7e-18	53.54	PREDICTED: zinc finger protein 4-like [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58037	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019555T1	MELO3C019555T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58037	MU58037	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019555	Csa3G199020	Cucumber (Chinese Long) v2	cumeB166
MELO3C019555	Cla013107	Watermelon (97103) v1	mewmB461
MELO3C019555	ClCG05G010390	Watermelon (Charleston Gray)	mewcgB427
MELO3C019555	Cla97C05G092750	Watermelon (97103) v2	mewmbB434
MELO3C019555	Bhi01G001291	Wax gourd	mewgoB530
MELO3C019555	CSPI03G18060	Wild cucumber (PI 183967)	cpimeB241
MELO3C019555	Cucsa.108840	Cucumber (Gy14) v1	cgymeB144
MELO3C019555	CmaCh16G003360	Cucurbita maxima (Rimu)	cmameB298
MELO3C019555	CmaCh04G004660	Cucurbita maxima (Rimu)	cmameB691
MELO3C019555	CmoCh04G004970	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019555	Lsi05G002460	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019555	Cp4.1LG01g02380	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019555	Carg19673	Silver-seed gourd	carmeB0296
MELO3C019555	Carg08136	Silver-seed gourd	carmeB0380
MELO3C019555	CsaV3_3G018110	Cucumber (Chinese Long) v3	cucmeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019555	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019555	Cucumber (Gy14) v2	cgybmeB210
MELO3C019555	Melon (DHL92) v3.5.1	memeB090
MELO3C019555	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019555	Cucumber (Chinese Long) v2	cumeB511