CmoCh20G005210 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G005210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDouble-stranded RNA-binding protein 2
LocationCmo_Chr20 : 2495530 .. 2500234 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATAAATTCTCAATCTCTTCACTATTTTGTTTTTGTTTTTATCTTATCGAATAACAAATCAATTACCCACTCGCTTTCGCTCCAAAGTTTACTCCAATCTGTCTCTCTGGCCGATGAAATCCTCTCCATCGTCCTACTTCACTCTCCGGCGACCACTGAGGCGGTCAGTTTACCTCTTCCGCCTCTGCTTGCCGTTTCTATAGGTGATTGACGGCGGGAAGGGAGCTGAAATCGGAGGCGAAATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAGGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCGGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGTGCGTATTCTCGCTAATTCATTGTTCTGAATAAGTTCCTCTTGTTGTTGCGAGTATTGTGTTTTACTTTGTGTTGGATTTCACTTTTATTGTTCTTCTTGATCTTCTTTTCTCAATGATCAGTAACTTTTACGAAGTAGAATAGATTGCGTCGCTTGACATTTTTCCGCGCCATGTTCGAGTTCTATGTCTCATTTCCTTTGCCGGTCTTTAAACCTATTATCGCAGATCAAAATCTGCTAGAATTGGAATTTCGATACTTCGTACAGCGTAAGTTGGTTTGATTTCCTTCGATTCCTGAGTACGACTTCACCGTACGCAGCGGTGACGCCTGAACGTTCCGGCTTGCGACCTCTATCGGTCGGAGTGGAGTCGGCGATTACGATAACCTGGCTTTTTCATGATGCAAAATTACATAAACACCCTTACCTTTTCCCCTTCTTTCCTCTAATGGCTGAGCGGATTCCTAACGCAGTTGTTTTTTTCTGACGAAGCCGACTACTCTAGACTTTAAATTCAAGAAACAGAGTATATTTTAGGAAAGTTACTGACGGAAGCCCTCAACATTGATGGCTACCTGGGTTTGTTTTGTCGTTATCAATATCACTACGGGACCAGTTGCGTGCGGGATTTTCTATGGGGATGGTTGGTAATATTAAATTTGCTTGATGCAGTGTATTCAGTGGCCGAAATTTTAGCTTTGTAGCTTTAAATTACTGAAATCTCGAGAGGAAAGTAATTAAGAATTTATGTTTTAACTTGTCCTATTAGCTTTTCCTTTATACGTCCCTGAAAGCCTCTGTATGCGCTGCTCAAGTTGATGGCTGTTGATGTTTATCGTTCTATGATGTCAATTCTGCATTGTTTGTTAAGGATTGTTGAGAAGAGTCTAGATTGGCTAAGGATTTGTCCGTAAGAAATAAATCTCCATTGACATGAGTTCTTTTGGGAAACAAAAAAGTAAAGCCACGAGAGCTTATGATCAAGTCGATAATATCATATCATTGTGGAGAGTCGTAATTCCTAATATAGTTGCTCTGAATTTATTCATATGTGAATACAGGTCTTTTGTTATCTGAATTTATTCATATGTGAACACAGGTCTTTTGGTTTAGTGACTAAGTAATATCATTATGATCAGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGATCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCACGTTCATTGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTGAAACAATGTGAGTTTGTTTTTTGAATTTTTCTTCCTGAAAATTTAAAACCATCGTAGAAGATCATGTAGCTAGCAGAAAATGTTATACATTGTCATTTTCTATGACAGCCCTCATCCCCCTGATTCAATTTTTCTCAGCAGTCTTTAAGATTCTTATTTAATGAGCTTAGTGTGCTTTAATTTGGATATTACATGGATCTTGATCATCTTTGGAAGAAGAATTTGGCATTGGATTTTCATTGATATATTGATTGTCTGTCATTAAACATGTGGATGATTTGTAGTATGTTTCCTCTATCCAGTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGCCCCAATGCCATTCCCAAAGAAACTTTCACTTCAAACTCCAAGAGCAACCAGTCAGCAACCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCTCAAAAGTTCCCGGCACCTGGAGCCGTTCCTTATGTCCCGATTCAACAATATAGCATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGTACCCTCCCAGATGCGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGATTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACTGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTAAAAATCTGAAACAGCCCATAATCCAATAGATTGTCATGTTTACCATATGATGTGATAATCTCAAATCATCTAATGTTATTAGATTAATGTTCTGTTTTAGTCTCCTTTGTAATGTCTCGACAGTTTTGTGTTTGCCATATATGACCAAATAGTTAGCCTTAAGGTAAACGAGTGAGTATCCACAGCCGAATGTTAATTCTGAAGTCATTCGCCTTTTGCCATTTGCCAAAAGATTTAAGTCATTCATTCACAACTTCTCAGTTTCCTTGATTTTGCAGGTTCTAAAAGCCAAGGCAAGTGTTAGTTGAAAATGATTAAGTGGGTTGAGCTCCATATCTCTTCCAGGTATTTTCTTTTACAATCTTATATTGTTTTTCATCACTTCTCCATCTTTCTGTCTATTCTATTGGGAAGGAAGACGTGGAACACGAAGGGTCTTAATTCTTAAACACAAAAACATATTGAAAGATACAAAATCATGAAACCAACCAGCAATAAGGTTAAGATTAAAATATCATTACATCATATTCTTAGTCTTAGTCTAAAGCATTGAAAGCTGTCTGAAAGTAGAGGATGATAGGGAGTATGGATTTCTCATCCAGACGGAATAAAACACAATAATTTCACCCTCCAAATCATAACTATAAACATTCGAAGCCTAAAACATTGACCTAATTCTAGTTTGTTATTACCATATTTTACCCTTTTTTTTTGTCTACGTACTTCCCAAATAAGGACAGGATGGTTGGGACTAAACTAGAAGAAAGAAAATCAGTGTGATATAGCGCAATCCTATCTAGTTATTTGCAAAAACACATAGTTCTGATCTGATATTAATCCCAGAAACTTTCAACAATCAACTTAATTACTCATAGCATTCATCATTAAGATCAGTATTAAAATGCAAAACAAGAAAGTGATTAATCATAACTGTGACCCACGATGGGAAATTTGGATCCAATACATGAATCAGCAAAATGGGTTTTCAATTGTCAAGTGTCATATCAAATTCGGTGGAAAAAGAATTGGCATGAACTACTTTTTTGTTTTTGTACTATTGTTGAAAACATTCTAATTGCCCAGGATGGCAATCTTCAACACCCATAATTGATGGGAGTTTTGTAGGGTTTCTTCAGGTTAAAATATTGGAAGCAAACAAACAGACTAACAATTCTACTCTTGAAAATTCACCTCAAGAATCACTTGAAAAACACGTCGAAACACTTTTAGATGAACAATATCTAAAAACAACATTTTCAAAAGTGATTTTGATCCCATTGCTAATTGTGGGGGAGATTGAAAACAGGTATCAATCAAGTCTCAGCTTAAGAAGGAAGGAAAGTAAAGGGTGTGGTGTGTAAAAGAAGAGGGAAATGAAGAATGGAGAGTGAAATAAAGGATGGTTTAATTTGGTAGAGCAATTCCCCCAACCACCAATCTCTATCCATTGAGTTTTTACTTTATATGGTGAAAACAACAGAGGCCTGAAATGGGGAATATGATTAGGGGCATTGGCCAAGTTTTATCTTTTTAGAGCCTCTAAAAAACAATAGTTGTGTTGTGATAAAAGTGTGGCAAAGAAGCAAAGTTAGAAGAGTGGGACCAATTCTCCACTAATATTATTCCTTTCCTATGACAAAAGCAATGGCTTCACCCAAAAGGCGATGGAACCCTCCACCATATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTTATATTATATGTTTTGTGTTGAAACAGAAAAGCACAGAAAAGAGAACAAAAGATGAAGGAAGGATTATAAGGGTGGGG

mRNA sequence

ACAATAAATTCTCAATCTCTTCACTATTTTGTTTTTGTTTTTATCTTATCGAATAACAAATCAATTACCCACTCGCTTTCGCTCCAAAGTTTACTCCAATCTGTCTCTCTGGCCGATGAAATCCTCTCCATCGTCCTACTTCACTCTCCGGCGACCACTGAGGCGGTCAGTTTACCTCTTCCGCCTCTGCTTGCCGTTTCTATAGGTGATTGACGGCGGGAAGGGAGCTGAAATCGGAGGCGAAATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAGGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCGGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGATCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCACGTTCATTGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTGAAACAATTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGCCCCAATGCCATTCCCAAAGAAACTTTCACTTCAAACTCCAAGAGCAACCAGTCAGCAACCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCTCAAAAGTTCCCGGCACCTGGAGCCGTTCCTTATGTCCCGATTCAACAATATAGCATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGTACCCTCCCAGATGCGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGATTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACTGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTCTAAAAGCCAAGGCAAGTGTTAGTTGAAAATGATTAAGTGGGTTGAGCTCCATATCTCTTCCAGAAAAGCACAGAAAAGAGAACAAAAGATGAAGGAAGGATTATAAGGGTGGGG

Coding sequence (CDS)

ATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAGGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCGGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGATCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCACGTTCATTGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTGAAACAATTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGCCCCAATGCCATTCCCAAAGAAACTTTCACTTCAAACTCCAAGAGCAACCAGTCAGCAACCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCTCAAAAGTTCCCGGCACCTGGAGCCGTTCCTTATGTCCCGATTCAACAATATAGCATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGTACCCTCCCAGATGCGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGATTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACTGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTCTAAAAGCCAAGGCAAGTGTTAGTTGA
Homology
[Close]
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match: DRB2_ARATH (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 3.2e-114
Identity = 233/357 (65.27%), Postives = 272/357 (76.19%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SAVESSDEPEQVMIAR 180
           G++ELAGITF G+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS    E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALSNYCLKEKT-FRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKP---VP 240
           AL NY +KE     ++S+AP+PF KK  +Q  R TS QP PATTS+ILPFIC K      
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 RSRLPPTKNNSTTLPSHPLTACGSHP-QKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTA 300
           RS L  T      + +   +     P Q+F  P   PYVP++Q+   C G+  PVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 VPVYSASPCPQP-----------LKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPL 341
           VPV+SA P P P           + VPS MR + P+RIAPPV+IR A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match: DRB6_ORYSJ (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.2e-99
Identity = 224/420 (53.33%), Postives = 277/420 (65.95%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+Y+ +REGPDHAPRFKA+VNFNGE FESP    TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+AL +LA RGPS+SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAK-EAASSSAVESSDEPEQVMIAR 180
            ++ELAGITF G+PAKNKKQAEKNAA AAWSSL+QL + EA+SS+  ES+DE EQ+ IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATS-QQPPPATTSKILPFICQKPVPRSR 240
           AL NY LKEK    N+    PFPKK  +Q  R T+  Q   ++ SKILP    K   RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 --LPPTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVP 300
              P   + ++  P  P T   +   +FPA  A PYVP+  + MPC  +  PVT+RT++P
Sbjct: 241 PESPAASDAASQTPFRP-TESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIP 300

Query: 301 VYSASPCPQP----LKVPSQMRPSQPIRIAPPVSIRQAIPVFA-----APPPLSRKEL-- 360
           V+SA P P P     ++P  M    PIR+A PV IR A P+F       P P+   ++  
Sbjct: 301 VFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIKD 360

Query: 361 ---SALPKGDSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAI 403
                + +  SP +P Q       +D+ + L+        PV +    +Q P+   + AI
Sbjct: 361 VQHQQIKETRSPVMPVQ------VKDAQNQLLKGSLSPVIPVQIKDVQSQPPKEALSPAI 413

[Close]
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match: DRB5_ARATH (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-65
Identity = 170/360 (47.22%), Postives = 211/360 (58.61%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGE+FESP +C TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE++LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180
            ++ELAG+TF GE AK KKQAEKNAA+AAWSSLK++      SS     +E EQ  +AR 
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM------SSLDSQDEEKEQEAVARV 180

Query: 181 LSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRLP 240
           LS +  KE   R  +N           Q  R TSQQ     ++K L     + +      
Sbjct: 181 LSRFKPKEVRRRETTN-----------QWRRRTSQQ----DSNKDLLIERLRWINLLTNQ 240

Query: 241 PTKNNSTTLPS-HPLTACGSHPQKFPAPGAVPYVP-IQQY----SMPCRGIVLPVTIRTA 300
            + ++ST+ P+ H  ++  S     P P +   +P IQQY    S   +       I + 
Sbjct: 241 ASSSSSTSTPNQHKNSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSK 300

Query: 301 VPVYSASPCPQPLKVPSQMR--------PSQPIRIAPPVSIRQAIPVFAAPPPLSRKELS 347
             V   S         S M            P  +AP V +R  IPVFAAPPP     L+
Sbjct: 301 AKVNETSTRLSKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLN 339

[Close]
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match: DRB2_ORYSJ (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-63
Identity = 164/335 (48.96%), Postives = 199/335 (59.40%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE FESP  C TLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN L+ RGPS SLAA++LDETG+YKNLLQE A R G  LP YTT+RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAK--EAASSSAV--ESSDEPEQVM 180
            ++ELAG+TF G P K KKQA+KNAA+AAWS LKQL +  E +SSS       D+ EQ++
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 181 IARALSNY-------CLKEKTFRTNSNAPM----PFPK-------KLSLQTPRATSQQPP 240
           +AR L++          ++K  + +SN P      +PK       +L LQ     S  P 
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRLHLQKHAYPSVPPE 240

Query: 241 PATTSKILPFICQKPVPRSRLPPTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQY 300
            A           +  P   + PT   ST  P  P          +P P     +P  Q 
Sbjct: 241 QAMYHMWHQVQATQQKPHFPMVPTM-GSTGFPPPPTVL-----HMYPPPRGQFTMPSSQD 300

Query: 301 SM---PCRGIVLPVTIRTAVPVYSASPCP-QPLKV 310
            +   PC     PV  R   P Y AS  P +PL V
Sbjct: 301 GLGLIPCYPEASPVLPRYFSP-YPASFVPRRPLPV 328

[Close]
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match: DRB3_ARATH (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.6e-63
Identity = 156/348 (44.83%), Postives = 213/348 (61.21%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+AL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180
            ++ELAG++F GE AK KKQAEKNAA+AAW SL+++ +           +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL-----RGEEKEQEIVARV 180

Query: 181 LSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRLP 240
           LS +  KE   R         P +   +T   T +Q    TT+     +C+K +    L 
Sbjct: 181 LSRFRPKEVKRRE--------PNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 241 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPVYSA 300
             + +S++ P        ++  +  +         Q+Y+   + +  P   +  + + ++
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDP---KPEMRIKTS 300

Query: 301 SPCPQPLKVP----SQMRPSQPI-----RIAPPVSIRQAIPVFAAPPP 340
           SP P    V     S++ P         ++AP V IR  IPV +APPP
Sbjct: 301 SPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPP 331

[Close]
BLAST of CmoCh20G005210 vs. TrEMBL
Match: A0A0R4J4I2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G145900 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 2.2e-130
Identity = 269/421 (63.90%), Postives = 311/421 (73.87%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 180
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSR- 240
           AL NY LKEK   +NSNAP+PFPKK  +Q PR TS QPPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 241 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTI 300
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q   PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQ-MRPCQGMAPPVTI 300

Query: 301 RTAVPVYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 360
           RTA+PV+S  P P    V  Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 361 GDSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 412
            +   VPK D PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDDSPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 403

[Close]
BLAST of CmoCh20G005210 vs. TrEMBL
Match: A0A0B2S3K5_GLYSO (Double-stranded RNA-binding protein 2 OS=Glycine soja GN=glysoja_008311 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 6.4e-130
Identity = 268/421 (63.66%), Postives = 311/421 (73.87%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 180
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSR- 240
           AL NY LKEK   +NSNAP+PFPKK  +Q PR TS QPPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 241 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTI 300
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q   PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQ-MRPCQGMAPPVTI 300

Query: 301 RTAVPVYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 360
           RTA+PV+S  P P    V  Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 361 GDSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 412
            +   VPK + PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDESPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 403

[Close]
BLAST of CmoCh20G005210 vs. TrEMBL
Match: A0A0A0LSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.4e-129
Identity = 273/424 (64.39%), Postives = 311/424 (73.35%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FE P +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN+L+NRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 180
           G +ELAGITF GEPAKNKKQAEKNAA+AAWS+LKQLAKE+ASSS+  E++DE EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRL 240
           AL NY  KEK   +N NA +PF KKL +QTPR TS Q PPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PPTKNNSTTLPSH--PLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPV 300
           P + N      S    L   G  PQKF A  A+ Y+P+QQ+   C GI  PVTIRTA+PV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSASPCPQPLKV-PSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGD---S 360
           +SA P PQP K+ P Q+    PIRIAPPVSIRQAIPVFAAPP   RKE   + K +   +
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPP--VRKENPPVVKKEECPA 360

Query: 361 PTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVP-PNQVPETQNTK-----AINLDEE 412
           P  PK+DPP +                S PV++TVP P  V  T   +      +N  EE
Sbjct: 361 PAAPKEDPPAL----------------SAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEE 406

[Close]
BLAST of CmoCh20G005210 vs. TrEMBL
Match: M5WM87_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 2.4e-129
Identity = 256/372 (68.82%), Postives = 286/372 (76.88%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAEHSA
Sbjct: 94  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 153

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 154 AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 213

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 180
           G++ELAGITF GEPAKNKKQAEKNAA+AAWSSLKQLAKE ASSS+  E++DE EQ+ IAR
Sbjct: 214 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 273

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRL 240
           AL  Y LKEK    N  AP+ FPKK  +  PR TS QPP A TSKILP ICQK  PRSRL
Sbjct: 274 ALLTYRLKEK--MANPTAPILFPKKFPVHNPRPTSPQPPSAHTSKILPLICQKQAPRSRL 333

Query: 241 PPTKNNSTTLPS---HPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVP 300
                N   +PS    PL +    P +FPA GA PYVPI+Q   PC GI  PVTIRTAVP
Sbjct: 334 QSNATNDNRIPSSQPSPLESRVLRPHRFPAAGAAPYVPIRQLRTPCHGIAPPVTIRTAVP 393

Query: 301 VYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGDSPTV 360
           V+SA P P P  +P Q     P+R+APPV++RQA+PVF+APP         + K D PT 
Sbjct: 394 VFSAPPLPPPPVMPCQAMRVPPLRVAPPVTMRQAVPVFSAPP---------IRKDDPPTT 453

Query: 361 PKQDPPTIATED 369
            K+DPP I  ED
Sbjct: 454 RKEDPPIIVKED 454

[Close]
BLAST of CmoCh20G005210 vs. TrEMBL
Match: C6TJ54_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G075700 PE=2 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 6.2e-125
Identity = 260/411 (63.26%), Postives = 301/411 (73.24%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 180
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSR- 240
           AL NY LKEK   +NSNAP+PFPKK  +Q PR TS QPPPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSRH 240

Query: 241 ---LPPTKNNSTTLPSHPLTAC----GSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTI 300
                P + +        L+A     G    KFPA GA PYVPI+Q   PC+G+  PVTI
Sbjct: 241 LVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQ-MRPCQGMAPPVTI 300

Query: 301 RTAVPVYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKG 360
           RTA+PV+  SP P    V  Q+  +  +R+APPV+IRQA+PVFA PPP  RK+       
Sbjct: 301 RTAIPVF--SPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKD------- 360

Query: 361 DSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAI 403
           +   +PK +PPTI+     D L      A TP + T   N  P+    K++
Sbjct: 361 EPVPIPKDEPPTISAPSPEDKL-----PAKTPEAETKTENIPPKPDMVKSL 396

[Close]
BLAST of CmoCh20G005210 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 413.3 bits (1061), Expect = 1.8e-115
Identity = 233/357 (65.27%), Postives = 272/357 (76.19%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SAVESSDEPEQVMIAR 180
           G++ELAGITF G+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS    E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALSNYCLKEKT-FRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKP---VP 240
           AL NY +KE     ++S+AP+PF KK  +Q  R TS QP PATTS+ILPFIC K      
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 RSRLPPTKNNSTTLPSHPLTACGSHP-QKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTA 300
           RS L  T      + +   +     P Q+F  P   PYVP++Q+   C G+  PVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 VPVYSASPCPQP-----------LKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPL 341
           VPV+SA P P P           + VPS MR + P+RIAPPV+IR A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]
BLAST of CmoCh20G005210 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-66
Identity = 170/360 (47.22%), Postives = 211/360 (58.61%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGE+FESP +C TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE++LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180
            ++ELAG+TF GE AK KKQAEKNAA+AAWSSLK++      SS     +E EQ  +AR 
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM------SSLDSQDEEKEQEAVARV 180

Query: 181 LSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRLP 240
           LS +  KE   R  +N           Q  R TSQQ     ++K L     + +      
Sbjct: 181 LSRFKPKEVRRRETTN-----------QWRRRTSQQ----DSNKDLLIERLRWINLLTNQ 240

Query: 241 PTKNNSTTLPS-HPLTACGSHPQKFPAPGAVPYVP-IQQY----SMPCRGIVLPVTIRTA 300
            + ++ST+ P+ H  ++  S     P P +   +P IQQY    S   +       I + 
Sbjct: 241 ASSSSSTSTPNQHKNSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSK 300

Query: 301 VPVYSASPCPQPLKVPSQMR--------PSQPIRIAPPVSIRQAIPVFAAPPPLSRKELS 347
             V   S         S M            P  +AP V +R  IPVFAAPPP     L+
Sbjct: 301 AKVNETSTRLSKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLN 339

[Close]
BLAST of CmoCh20G005210 vs. TAIR10
Match: AT3G26932.1 (AT3G26932.1 dsRNA-binding protein 3)

HSP 1 Score: 242.3 bits (617), Expect = 5.4e-64
Identity = 156/348 (44.83%), Postives = 213/348 (61.21%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+AL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180
            ++ELAG++F GE AK KKQAEKNAA+AAW SL+++ +           +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL-----RGEEKEQEIVARV 180

Query: 181 LSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRLP 240
           LS +  KE   R         P +   +T   T +Q    TT+     +C+K +    L 
Sbjct: 181 LSRFRPKEVKRRE--------PNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 241 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPVYSA 300
             + +S++ P        ++  +  +         Q+Y+   + +  P   +  + + ++
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDP---KPEMRIKTS 300

Query: 301 SPCPQPLKVP----SQMRPSQPI-----RIAPPVSIRQAIPVFAAPPP 340
           SP P    V     S++ P         ++AP V IR  IPV +APPP
Sbjct: 301 SPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPP 331

[Close]
BLAST of CmoCh20G005210 vs. TAIR10
Match: AT3G62800.1 (AT3G62800.1 double-stranded-RNA-binding protein 4)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-30
Identity = 76/173 (43.93%), Postives = 99/173 (57.23%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           +YK QLQ  A +    LP Y++ REGP HAPRF+ +V F G+ F+S    PTL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           A+IA+ SL  + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPE 174
            ++E AG  F GE AK KK AE +AA  A+ S+K        S  + S  + +
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQED 168

[Close]
BLAST of CmoCh20G005210 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-18
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           ++K++LQE AQ+     P Y  V+EGP H   F+++V  +G  + S       + AE SA
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVR-SGLGHLPVF 120
           AE+AL  LA         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 TGSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAK 159
           T ++E+ GI + G   + KK AE +A   A  +++   K
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 173

[Close]
BLAST of CmoCh20G005210 vs. NCBI nr
Match: gi|657986387|ref|XP_008385320.1| (PREDICTED: double-stranded RNA-binding protein 2 [Malus domestica])

HSP 1 Score: 476.5 bits (1225), Expect = 4.9e-131
Identity = 270/422 (63.98%), Postives = 310/422 (73.46%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCTTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 180
           G +ELAGITF GEPAKNKKQAEKNAA+AAWSSLKQLAKE ASSS+  E++DE EQ+ IAR
Sbjct: 121 GVVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRL 240
           AL NY +KEK    N  AP+ FPKK  +Q  R TS QPPPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRIKEKMTMANPTAPILFPKKFPVQNRRPTSPQPPPAHTSKILPLICQKQAPRSRY 240

Query: 241 PPT---KNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVP 300
                  N  T+  + PL +    PQ+FPA GA PYVPI+Q   PC GI  PVTIRTAVP
Sbjct: 241 QSNATHDNRVTSSQASPLDSRVMRPQRFPAAGAAPYVPIRQLRTPCHGIAPPVTIRTAVP 300

Query: 301 VYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGDSPTV 360
           V+SA P P P  +P Q     P+R+APPV++RQA+PVF+A PP+ + +     K +SP +
Sbjct: 301 VFSAPPLPPPHAMPCQTMRIPPLRVAPPVTMRQAVPVFSA-PPVKKDDPPTTRKEESPVI 360

Query: 361 PKQDPPTIATEDSADSLIADHSVASTPVSLTVPP-------NQVPETQNTKAINLDEETK 412
            K+DP  I  EDS   L  D  +     +  V P        QV ET    A +L EE+K
Sbjct: 361 VKEDPXIIVKEDSXIILKEDPPIIPKDPAAVVAPCVQNKPIGQVEETVRXAADDL-EESK 420

[Close]
BLAST of CmoCh20G005210 vs. NCBI nr
Match: gi|1009115820|ref|XP_015874436.1| (PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 474.6 bits (1220), Expect = 1.8e-130
Identity = 264/406 (65.02%), Postives = 304/406 (74.88%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSS-AVESSDEPEQVMIAR 180
           G++ELAGITF GEPAKNKKQAEKNAA+AAWSSLKQLAK+ ASSS   E++DE EQ+ IAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKDTASSSPEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRL 240
           AL  Y LKEK    N NAP+PFPKK  +Q+PR TS QPPPATTSKILP ICQK  PRSR 
Sbjct: 181 ALQIYRLKEKIAMANPNAPIPFPKKFPVQSPRPTSPQPPPATTSKILPLICQKAAPRSRP 240

Query: 241 PPTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPVYS 300
                N + L     T   + P KFPA GA PYVPI+Q   PC G+  PVTIRTAVPV+S
Sbjct: 241 QLNAVNDSPLSEGHAT---TRPLKFPAAGATPYVPIRQLRTPCHGVAPPVTIRTAVPVFS 300

Query: 301 ASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGDSPTVPKQ 360
           A P P P  VP Q+     +RIAPPV+IRQA+PVFA+PP         + K D+P + K+
Sbjct: 301 APPRPSPPAVPCQVMRPPHVRIAPPVTIRQAVPVFASPP---------VRKEDAPAIRKE 360

Query: 361 DPPTIATEDSADSLIAD-HSVASTPVSLTVPPNQVPETQNTKAINL 405
           DP  I   +  + L+A      ST V+    P +V   Q+ + + +
Sbjct: 361 DPAAIVAPNMQNKLLAQREETGSTSVN---NPQEVETVQSLEQLKI 391

[Close]
BLAST of CmoCh20G005210 vs. NCBI nr
Match: gi|356539370|ref|XP_003538171.1| (PREDICTED: double-stranded RNA-binding protein 2 [Glycine max])

HSP 1 Score: 473.8 bits (1218), Expect = 3.1e-130
Identity = 269/421 (63.90%), Postives = 311/421 (73.87%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 180
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSR- 240
           AL NY LKEK   +NSNAP+PFPKK  +Q PR TS QPPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 241 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTI 300
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q   PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQ-MRPCQGMAPPVTI 300

Query: 301 RTAVPVYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 360
           RTA+PV+S  P P    V  Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 361 GDSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 412
            +   VPK D PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDDSPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 403

[Close]
BLAST of CmoCh20G005210 vs. NCBI nr
Match: gi|734417045|gb|KHN38762.1| (Double-stranded RNA-binding protein 2 [Glycine soja])

HSP 1 Score: 472.2 bits (1214), Expect = 9.2e-130
Identity = 268/421 (63.66%), Postives = 311/421 (73.87%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 180
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSR- 240
           AL NY LKEK   +NSNAP+PFPKK  +Q PR TS QPPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 241 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTI 300
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q   PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQ-MRPCQGMAPPVTI 300

Query: 301 RTAVPVYSASPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 360
           RTA+PV+S  P P    V  Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 361 GDSPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 412
            +   VPK + PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDESPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 403

[Close]
BLAST of CmoCh20G005210 vs. NCBI nr
Match: gi|659071913|ref|XP_008462570.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo])

HSP 1 Score: 471.5 bits (1212), Expect = 1.6e-129
Identity = 271/422 (64.22%), Postives = 310/422 (73.46%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FE P +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALN+L+NRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 180
           G +ELAGITF GEPAKNKKQAEKNAA+AAWS+LKQLAKE+ASSS+  E++DE EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRL 240
           AL NY  KEK   +N NA +PF KKL +QTPR TS Q PPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PPTKNNSTTLPSHP--LTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPV 300
           P + N      S    L   G  PQKF A  A+ Y+P+QQ+   C GI  PVTIRTA+PV
Sbjct: 241 PFSANKIPISQSQTPVLEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSASPCPQPLKV-PSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGD---S 360
           +SA P PQP K+ P Q+    PIRIAPPVSIRQAIPVFAAPP   RKE   + K +   +
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPP--VRKENPPVVKKEECPA 360

Query: 361 PTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKA----INLDEETK 412
           P  PK+DPP +                S PV++  PP  V   +  +A    +N  EETK
Sbjct: 361 PAAPKEDPPAL----------------SAPVTVPSPPTVVSTAEVEQATFTVVNSPEETK 404

The following BLAST results are available for this feature:
BLAST of CmoCh20G005210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB2_ARATH3.2e-11465.27Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1[more]
DRB6_ORYSJ2.2e-9953.33Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE... [more]
DRB5_ARATH2.7e-6547.22Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1[more]
DRB2_ORYSJ1.1e-6348.96Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE... [more]
DRB3_ARATH9.6e-6344.83Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1[more]
BLAST of CmoCh20G005210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0R4J4I2_SOYBN2.2e-13063.90Uncharacterized protein OS=Glycine max GN=GLYMA_11G145900 PE=4 SV=1[more]
A0A0B2S3K5_GLYSO6.4e-13063.66Double-stranded RNA-binding protein 2 OS=Glycine soja GN=glysoja_008311 PE=4 SV=... [more]
A0A0A0LSF2_CUCSA1.4e-12964.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1[more]
M5WM87_PRUPE2.4e-12968.82Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 S... [more]
C6TJ54_SOYBN6.2e-12563.26Uncharacterized protein OS=Glycine max GN=GLYMA_12G075700 PE=2 SV=1[more]
BLAST of CmoCh20G005210 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28380.11.8e-11565.27 dsRNA-binding protein 2[more]
AT5G41070.11.5e-6647.22 dsRNA-binding protein 5[more]
AT3G26932.15.4e-6444.83 dsRNA-binding protein 3[more]
AT3G62800.18.8e-3043.93 double-stranded-RNA-binding protein 4[more]
AT1G09700.15.9e-1834.59 dsRNA-binding domain-like superfamily protein[more]
BLAST of CmoCh20G005210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657986387|ref|XP_008385320.1|4.9e-13163.98PREDICTED: double-stranded RNA-binding protein 2 [Malus domestica][more]
gi|1009115820|ref|XP_015874436.1|1.8e-13065.02PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujub... [more]
gi|356539370|ref|XP_003538171.1|3.1e-13063.90PREDICTED: double-stranded RNA-binding protein 2 [Glycine max][more]
gi|734417045|gb|KHN38762.1|9.2e-13063.66Double-stranded RNA-binding protein 2 [Glycine soja][more]
gi|659071913|ref|XP_008462570.1|1.6e-12964.22PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0070919 production of siRNA involved in chromatin silencing by small RNA
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0003725 double-stranded RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G005210.1CmoCh20G005210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 88..154
score: 1.1E-17coord: 2..68
score: 1.0
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 2..68
score: 8.5E-14coord: 88..153
score: 5.0
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 2..69
score: 2.2E-16coord: 88..154
score: 2.3
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 1..70
score: 12.597coord: 87..155
score: 11
NoneNo IPR availablePANTHERPTHR10910EUKARYOTE SPECIFIC DSRNA BINDING PROTEINcoord: 1..229
score: 2.2E
NoneNo IPR availablePANTHERPTHR10910:SF94SUBFAMILY NOT NAMEDcoord: 1..229
score: 2.2E
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 2..68
score: 9.11E-17coord: 88..157
score: 2.67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G005210CmaCh20G004850Cucurbita maxima (Rimu)cmacmoB550
CmoCh20G005210CmaCh02G008930Cucurbita maxima (Rimu)cmacmoB605
CmoCh20G005210Lsi03G000490Bottle gourd (USVL1VR-Ls)cmolsiB510
CmoCh20G005210Cp4.1LG05g08230Cucurbita pepo (Zucchini)cmocpeB537
CmoCh20G005210Cp4.1LG16g05380Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G005210Bhi08G000147Wax gourdcmowgoB0697
CmoCh20G005210Carg03239Silver-seed gourdcarcmoB0464
CmoCh20G005210Carg08583Silver-seed gourdcarcmoB0970
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G005210CmoCh13G002600Cucurbita moschata (Rifu)cmocmoB179
CmoCh20G005210CmoCh02G008950Cucurbita moschata (Rifu)cmocmoB403
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G005210Cucurbita moschata (Rifu)cmocmoB419
CmoCh20G005210Cucurbita moschata (Rifu)cmocmoB422
CmoCh20G005210Cucumber (Gy14) v1cgycmoB0321
CmoCh20G005210Cucumber (Gy14) v1cgycmoB0839
CmoCh20G005210Cucumber (Gy14) v1cgycmoB1064
CmoCh20G005210Cucurbita maxima (Rimu)cmacmoB474
CmoCh20G005210Cucurbita maxima (Rimu)cmacmoB818
CmoCh20G005210Wild cucumber (PI 183967)cmocpiB541
CmoCh20G005210Wild cucumber (PI 183967)cmocpiB549
CmoCh20G005210Cucumber (Chinese Long) v2cmocuB536
CmoCh20G005210Cucumber (Chinese Long) v2cmocuB544
CmoCh20G005210Melon (DHL92) v3.5.1cmomeB481
CmoCh20G005210Melon (DHL92) v3.5.1cmomeB508
CmoCh20G005210Watermelon (Charleston Gray)cmowcgB474
CmoCh20G005210Watermelon (Charleston Gray)cmowcgB479
CmoCh20G005210Watermelon (Charleston Gray)cmowcgB502
CmoCh20G005210Watermelon (97103) v1cmowmB505
CmoCh20G005210Watermelon (97103) v1cmowmB513
CmoCh20G005210Bottle gourd (USVL1VR-Ls)cmolsiB490
CmoCh20G005210Bottle gourd (USVL1VR-Ls)cmolsiB503
CmoCh20G005210Bottle gourd (USVL1VR-Ls)cmolsiB509
CmoCh20G005210Cucumber (Gy14) v2cgybcmoB360
CmoCh20G005210Cucumber (Gy14) v2cgybcmoB769
CmoCh20G005210Cucumber (Gy14) v2cgybcmoB773
CmoCh20G005210Melon (DHL92) v3.6.1cmomedB556
CmoCh20G005210Melon (DHL92) v3.6.1cmomedB584
CmoCh20G005210Cucumber (Chinese Long) v3cmocucB0643
CmoCh20G005210Cucumber (Chinese Long) v3cmocucB0651
CmoCh20G005210Cucumber (Chinese Long) v3cmocucB0656
CmoCh20G005210Watermelon (97103) v2cmowmbB543
CmoCh20G005210Watermelon (97103) v2cmowmbB545
CmoCh20G005210Watermelon (97103) v2cmowmbB569
CmoCh20G005210Wax gourdcmowgoB0672
CmoCh20G005210Wax gourdcmowgoB0686