CmaCh20G004850 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G004850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Double-stranded RNA-binding protein 2
Location	Cma_Chr20 : 2346450 .. 2352697 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGGATTCCAGGATCTCCGTCGGACAACTCTAGCAATTCTTCAGCCCCGCAACTGCCGCCGCCGCCGCCGCCGCCGCAAATTTCATCTGCAACCAACTCACCACCACCCTCTAAGTATGGGTTTTTCTCCTTTTTTTATTTTATTTTATTTTTCTTATTTAATTACATAACTTTGAAACTATATTATGGTTATGTGGTTTATAAATTGACAATTAATTACTAATTCATTTTCAAAACAAAAGAGAGGCCCAGTAGGCCCAAATCCTGAAGGATATGTGGACCAAAAGCCCAAATAGTTGAATTATGGGCCTATCACAGATTGGCCCAAATAGTTATCTCCTGAGCTGCTTTTATTCTTTTGACAATTATGTCCTTCTCGTTACAAAATAAGGTGTTACCGGACTCTCTGCAATAATATGATATTATCCACTTTGAACATAAATATTTATGGCTATGTTTTGGGCTTTCCCAAAAGACTTCGTACCAATGAAGACAATGATTATAAACTCATGACCATTCCTTAAATTAACCGATGTGAGACTGTCATCCAACACTTTCCACATTCGAAAAATGTCAACCCAACGAGAAATCGACCACTAATAACGGAGCGAATATAAGGTATCGAGAGGGCTGTCGCAGTCAAGTGCACTTAGACAAAAAGGGTGATCGAGACAAGGTGCTTTCAAATTAATCTTAGTCAATTTGAAATTGTTTTAAATAATAATTTAATTTGTTTTTTTTAATGAAAAGATTAAAAGAAAACTCAATTAAGCTTATAGTTTACTTAATCATGAATCTTTAGTGAGAAGGTTCGTAAATCTAGAAAGAGCCCGTAATTAATTATAATAAACTATTTTTAATTAATTATGAAAATTGAACAAAAAAGAAATAGTTGAAAGAGATCACATCCCATGCAGTTGACTGAGAGCAACAATAAATTCTCAATCTCTTAACTATTTATTATTATTATTATTATTATTATTATTTTATCGAATGACAAATCAATTACCCACTCGATTTCGCTCCAAATTTTACTCCAATCTCTCTCTGGCCGATGAAATCCTCTCCATCGTCCTACTTCACTCTCCGGCGACCACTGAGGCGGTCAGTTTACCTCTTCCGCCTCTGCCTACCGTTTCTATAGGTGATTGACGGCGGGAAGGGAGCTGAAATCGGAGGCGAAATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCTGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGTGCGTATTCTTGCTAATTCATTGTTCTGAATAAGTTCCTGTTGTTGTTGCGAGTATTGTGTTTTACTTTATGTTGGATTTCACTTTTATTGTTCTTCTTGATCTTCTTTTCTCAATGATCAGTAACTTTTACGAACTAGAATAGATTGCGTCGCTTGACATTTTTCCGCGCCATGTTCGAGTTTCATGTCTCATTTCCTTTGCCGGTCTTTAAACCTATTATCGCAGATCAAAATCTGCTAGAATTGGAATTTCGATACTTCGTGCAGCGTAAGTTGGTTTGATTTCCTTCGATTATTGAGTACGGCTTCATCGTACGCAGCGGTGACGCCTGAACGTTCCGGCTTGCGACCTCTATCGGCCGGAGTGGAGTCGGCGATTACGATAACCTGGCTTTTTCATGATGCGAAATTACATAAACACCCTTACCTCCCCCCCCCCCTTCTTTCCTCTAATGGCTGAGCGGATTCCTAACGCAGTTGTTTTTTTCTGACGAAGCCGACTACTGTAGACTTTAAATTCAAGAAACAGAGTATATTTTAGGAAAGTTACTGACGGAAGCCCTCAACATTGATGGCTACCTGGGTTTGTTTTGTCGTTATCAATATCACTACGGGACCAGTTGCGTGCGGGATTTTCTATGGGGATGGTTGGTAATATTAAATTTGCTTGATGCAGTGTATTCAGTGGCCGAAATTTTAGCTTTGTAGCTTTAAATTACTGAAATCTCGAGAGGAAGGTAATTAAGAATTTATGTTTTAACTTGTCCTATTAGCTTTTTCTTTATACGTCCCTGAAAGCCTCTGTATGATCTGCTCAAGTTGATGGCTGTTGAAGTTTATCGTTCTATGATGTCAATTCTGCATTGTTTGTTGAGGATGGCTGGGAAGGAGTCCACATTGGCTAATTTAAGGAATGATCATGGGTTTATCCGTAAGAAATATCTTCATTGGTATGAGTTCTTTTGGAAAACCAAAAAATAAAGCCATGAGAGCTTATGATCAAAGTAGACAATATCATATCATTGTGGAGAGTCGTAATTCCTAACATAGTTTCTGTCTTGTTATCTGAATTTATTCATATGTGAACACAGGCCTTTTGGTTTAGTGACTAAGTAATATCATTATGATCAGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGGTCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCCCGTTCATCGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTAAAACAACGTGAGTTTGTTTTTTGAATTTTTCTTCCTGAAAATTTAAAACCATCGTAGAAGATCCATGTAGCTAGCAGAAAATGTTATACATTGCCATTTTCTATGACAGCCCTCATCCCCCTGATTCATTTTTTCTCAGAAGTCTTTAAGATTCTTATTTAATGAACTTAGTGTGCTTTAATTTGGATATTACATGGATCTTGATCATCTTTGGAAGAAGAATTTGGCATTGGATTCTCATTAATATATTGATTGTCTGTCATTAAACATGTGGATGATTTGTCGTATGTTTCCTCTATCCAGTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGGCCCAATGCCATTCCCAAAGAAACTTTCATTTCAGACTCCAAGAGCAACCAGTCAGCATCCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCGCAAAAGTTCCCGGCACCTGGAGCAGTTCCTTATGTCCCGATTCAACAATATAGGATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGCTCCCTCCCAGATACGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGAGTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACGGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTAAAAATCTGAAACAGCCCATAATCCAATAGATTGTCATTTTTACCATATGATGTGATAATCTCAAATCATCTAATGTTATTAGATTAATGTTCTGTTTTAGTCTCCTTTGTAATGTCTCGACAGTTTTGTGTTTGCCATATATGACCAAATAGTTAGCCTTAAGATAGACGAGTGAGTATCCACAGCAGAATGTTAATTCTGAAGTCGTTCGCATTTTGCCATTTGCCAAAAGATTTAAGTCATTCATTCGCAACTTCTCAGTTTCCTTGATTTTGCAGGTTCTAAAAGCCAAGGCAAGTGTTAGAATTGTTGAAAACGATTTAGTGGGTTGAGCTCCATATCTCTTCCAGGTATTTTCTTTTACAATCTTATATTGTTTTTTCATCACTTCTCCATCTTTCTGTCTATTCTATTGGGAAGGAAGACGTGGAACGAAGGGTCTTAATTCTTAAACACAAAAACATATTGAAAGATACAAAATCATGAAACCAACCAGCAATAAGGTTAAGATTAAAATATCATTACATTATATTCTTAGTCTTAGTCTAAAGCATTGAAAGCTGTCTGAAAGTAGAGGATGATAGGGAGTATGGATTTCTCATCCAGACGGAATAAAACACAATAATTTCACCCTCCAAATCATAACTGTAAACATTCGAAGCCTAAAACATTGACCTAATTCTAGTTTGTTATTACCATAGTTTACCTTTTTTTTTTGTCTACGTACTTCCCAAATAAGGACAAGATGGCTGGGACTAAACTAGAAGAAAGAAGATCAGTGTGATATAGCGCAATCCTATGTAGTTATTTGCAAAAACACATAGTTCTGATCTGATATTAATCCCAAAAACTTTCAACAATCAACTTAATTACTCATTAACATTCATCATTAAGATCAGTATTAAAATGCAAAACAAGAAAGTGATTAATCATAACTGTGACCCACGATGGGAAATTTGGATCCAATACATGAATCAGCAAAATGGGTTTTCAATTGTCAAGTGTCATGTCAAATTCGGTGGAAAAAGAATTGGCATGAACTACTTTTTTGTTTTTGTACTATTGTTGAAAACATTCTAATTGCCCAGGATGGTAATCTTCAACACCCATAATTGATGGGAGTTTTGTAGGGTTTCTTCAGGTTAAAATATTGGAAGCAAACAAACAGACTAAAAATTCTACTCTTGAAAATTCACCTCAAGAATCACTTGAAAAACACGTCGAAACACTTTTAGATGAACAATATCTAAAAACAACATTTTCAAAAGTGATTTTGATCCTATTGCTAATTGTGGGGAGATTGAAAACAGGTATCAATCAAGTCTCAGCTTAAGAAGGAAGGAAAGTAAAGGGTGTGGTGTGTAAAAGAAGAGGGAAATGAGGAATGGAGAGTGAAATAAAAGATGGTTTAATTTGGTAGAGCAATTCCCCCAACCACCAATCTCTATCCATTGAGTTTTTACTTTATATGGTGAAAACAACAGAGGCCTGAAATGGGGAATATGATTAGGGGCATTGGCCAAGTTTGATCTTTTTAGAGCCTCTAAAAAACAATAGTTGTGTTGTGATAAAAGTGTGGCAAAGAAGCAAAGTTAGAAGAGTGGGACCAATTCTCCACTAATATTATTCCTTTCCTATGACAAAAGCAATGGCTTCACCCAAAAGGAGATGGAACCCTCCACCATATCTCCCTCTCTCTCTCTCTCTCTCTCGTATATTATAGTTTTGTGTTGAAACAGAAAAGCACAGAAAAGTGAACAAAAGATGAAGGAAGGATTATAAGGGTGGGGCGAAGGGGGAGGGGACAAAGTGGAAGAATGTTAATCCCATAACCTAAAGTTTTGTAAAGCAAAATATACCCATTTGACTTTCTCCTTGCTTTTCCTTTTCCCTTCCCCTACTCAAAACACTTTATTTATTTTACTTCATTACTATAATTCCTAATCCCCCTTCCCACCTCTAATCTTAAGTCACACTTGGATTGAATACTGCTTTCCATAGAATTTTATAGGTATCTACGAGATCGAGTATGAAATTCTGTTTACTCACTTTAATTTGAGTATCTATTTCTATCCCTTTATTAGTAGGATTAGAAATCCTTTATTTTACATATCCATACGACTGAGTTTTCTAGCTTCTTGTTGTTCTTGCTTTTGAGAAGGAAGGATTAAGAAAATCCTACTTATTGCAACTTTCTCCAAATCTCCAGGAAAAACATGAAAACAAGAGGTTGGAACGGTACGATCCCTCCATCACTCTAGAACGAAAGTAACTTAGAGAGTCATTCCATTTAAGGTGAGCATGTGTGGTTAATGGTTATGGGAGTATATACAAATGTTCGGGTGTCCGAGCCAAATAGTCATACGATAGCTTCACTTATTAGATCAATACCAGTCG

mRNA sequence

ATGAAATGGATTCCAGGATCTCCGTCGGACAACTCTAGCAATTCTTCAGCCCCGCAACTGCCGCCGCCGCCGCCGCCGCCGCAAATTTCATCTGCAACCAACTCACCACCACCCTCTAATGAGAAGGTGATTGACGGCGGGAAGGGAGCTGAAATCGGAGGCGAAATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCTGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGGTCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCCCGTTCATCGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTAAAACAACTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGGCCCAATGCCATTCCCAAAGAAACTTTCATTTCAGACTCCAAGAGCAACCAGTCAGCATCCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCGCAAAAGTTCCCGGCACCTGGAGCAGTTCCTTATGTCCCGATTCAACAATATAGGATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGCTCCCTCCCAGATACGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGAGTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACGGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTAAAAATCTGAAACAGCCCATAATCCAATAGATTGTCATTTTTACCATATGATGTGATAATCTCAAATCATCTAATGTTATTAGATTAATGTTCTGTTTTAGTCTCCTTTGTAATGTCTCGACAGTTTTGTGTTTGCCATATATGACCAAATAGTTAGCCTTAAGATAGACGAGTGAGTATCCACAGCAGAATGTTAATTCTGAAGTCGTTCGCATTTTGCCATTTGCCAAAAGATTTAAGTCATTCATTCGCAACTTCTCAGTTTCCTTGATTTTGCAGGTTCTAAAAGCCAAGGCAAGTGTTAGAATTGTTGAAAACGATTTAGTGGGTTGAGCTCCATATCTCTTCCAGGAAAAACATGAAAACAAGAGGTTGGAACGGTACGATCCCTCCATCACTCTAGAACGAAAGTAACTTAGAGAGTCATTCCATTTAAGGTGAGCATGTGTGGTTAATGGTTATGGGAGTATATACAAATGTTCGGGTGTCCGAGCCAAATAGTCATACGATAGCTTCACTTATTAGATCAATACCAGTCG

Coding sequence (CDS)

ATGAAATGGATTCCAGGATCTCCGTCGGACAACTCTAGCAATTCTTCAGCCCCGCAACTGCCGCCGCCGCCGCCGCCGCCGCAAATTTCATCTGCAACCAACTCACCACCACCCTCTAATGAGAAGGTGATTGACGGCGGGAAGGGAGCTGAAATCGGAGGCGAAATGTACAAGAACCAGCTCCAAGAGTTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCTGTTAGGGAAGGTCCTGACCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAATGGCGAGGTTTTTGAAAGCCCTAACCATTGTCCTACTCTCCGGCAGGCTGAGCACTCGGCGGCTGAGATTGCTCTCAATTCCCTTGCGAATCGCGGTCCATCTCACTCGCTTGCTGCTCGGATCCTGGACGAAACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTCGGGGCTCCGTTGCCACAATATACAACAGTCAGGTCAGGACTTGGACATTTGCCTGTTTTTACGGGGTCTATAGAATTGGCTGGAATCCCGTTCATCGGGGAACCTGCCAAAAATAAGAAACAGGCAGAGAAGAATGCAGCCTTGGCAGCTTGGTCATCTTTAAAACAACTGGCAAAAGAAGCGGCAAGTTCATCAGCAGTTGAAAGCAGCGACGAGCCCGAGCAAGTTATGATAGCTCGGGCACTATCAAACTATTGTTTAAAAGAGAAAACGTTCAGGACTAACTCAAATGGCCCAATGCCATTCCCAAAGAAACTTTCATTTCAGACTCCAAGAGCAACCAGTCAGCATCCTCCCCCTGCAACCACATCGAAAATTCTCCCTTTCATTTGCCAAAAACCAGTTCCTCGAAGCAGACTACCACCAACAAAAAACAACAGCACTACGTTACCATCACATCCTCTTACAGCCTGTGGGAGTCATCCGCAAAAGTTCCCGGCACCTGGAGCAGTTCCTTATGTCCCGATTCAACAATATAGGATGCCTTGTCGGGGAATTGTACTACCTGTGACTATAAGAACTGCTGTGCCTGTTTACTCTGCATCACCATGCCCACAACCCCTGAAGGCTCCCTCCCAGATACGACCTTCCCAACCCATTCGAATTGCCCCTCCTGTCTCTATTAGACAAGCCATTCCAGTTTTTGCTGCTCCTCCACCATTGTCAAGAAAGGAACTCTCTGCTCTTCCCAAAGGAGAGTCTCCCACTGTCCCTAAACAAGATCCTCCAACCATTGCTACTGAGGATTCTGCCGATTCCCTGATAGCAGATCATTCAGTTGCTTCCACCCCAGTCTCGCTCACGGTGCCTCCTAATCAAGTACCAGAAACTCAGAACACAAAAGCAATCAATTTGGATGAAGAAACCAAAACAGTTAAAAATCTGAAACAGCCCATAATCCAATAG

Protein sequence

MKWIPGSPSDNSSNSSAPQLPPPPPPPQISSATNSPPPSNEKVIDGGKGAEIGGEMYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSAAEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFTGSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRLPPTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKTVKNLKQPIIQ

Homology

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BLAST of CmaCh20G004850 vs. Swiss-Prot
Match: DRB2_ARATH (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 6.8e-113
Identity = 229/357 (64.15%), Postives = 268/357 (75.07%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SAVESSDEPEQVMIAR 235
           G++ELAGI F G+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS    E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 236 ALSNYCLKEKT-FRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKP---VP 295
           AL NY +KE     ++S+ P+PF KK   Q  R TS  P PATTS+ILPFIC K      
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 296 RSRLPPTKNNSTTLPSHPLTACGSHP-QKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTA 355
           RS L  T      + +   +     P Q+F  P   PYVP++Q+R  C G+  PVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 356 VPVYSASPCPQP-----------LKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPL 396
           VPV+SA P P P           +  PS +R + P+RIAPPV+IR A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]

BLAST of CmaCh20G004850 vs. Swiss-Prot
Match: DRB6_ORYSJ (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.9e-99
Identity = 224/436 (51.38%), Postives = 281/436 (64.45%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLP+Y+ +REGPDHAPRFKA+VNFNGE FESP    TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+AL +LA RGPS+SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAK-EAASSSAVESSDEPEQVMIAR 235
            ++ELAGI F G+PAKNKKQAEKNAA AAWSSL+QL + EA+SS+  ES+DE EQ+ IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATS-QHPPPATTSKILPFICQKPVPRSR 295
           AL NY LKEK    N+    PFPKK   Q  R T+      ++ SKILP    K   RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 296 --LPPTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVP 355
              P   + ++  P  P T   +   +FPA  A PYVP+  +RMPC  +  PVT+RT++P
Sbjct: 241 PESPAASDAASQTPFRP-TESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIP 300

Query: 356 VYSASPCPQPLKAPSQIRP----SQPIRIAPPVSIRQAIPVFA-----APPPLSRKEL-- 415
           V+SA P P P     Q+ P      PIR+A PV IR A P+F       P P+   ++  
Sbjct: 301 VFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIKD 360

Query: 416 ---SALPKGESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAI 474
                + +  SP +P Q       +D+ + L+        PV +    +Q P+   + AI
Sbjct: 361 VQHQQIKETRSPVMPVQ------VKDAQNQLLKGSLSPVIPVQIKDVQSQPPKEALSPAI 420

[Close]

BLAST of CmaCh20G004850 vs. Swiss-Prot
Match: DRB2_ORYSJ (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-66
Identity = 133/221 (60.18%), Postives = 161/221 (72.85%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE FESP  C TLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN L+ RGPS SLAA++LDETG+YKNLLQE A R G  LP YTT+RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAK--EAASSSAV--ESSDEPEQVM 235
            ++ELAG+ F G P K KKQA+KNAA+AAWS LKQL +  E +SSS       D+ EQ++
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 236 IARALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHP 273
           +AR L+       +    + G  P  K+    + R +S+ P
Sbjct: 181 VARTLA-------SLNQTNGGKTPQQKEKQQSSNRPSSRRP 214

[Close]

BLAST of CmaCh20G004850 vs. Swiss-Prot
Match: DRB5_ARATH (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-64
Identity = 128/196 (65.31%), Postives = 151/196 (77.04%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGE+FESP +C TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE++LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 235
            ++ELAG+ F GE AK KKQAEKNAA+AAWSSLK++      SS     +E EQ  +AR 
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM------SSLDSQDEEKEQEAVARV 180

Query: 236 LSNYCLKEKTFRTNSN 252
           LS +  KE   R  +N
Sbjct: 181 LSRFKPKEVRRRETTN 190

[Close]

BLAST of CmaCh20G004850 vs. Swiss-Prot
Match: DRB3_ARATH (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-62
Identity = 156/350 (44.57%), Postives = 211/350 (60.29%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+AL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 235
            ++ELAG+ F GE AK KKQAEKNAA+AAW SL+++ +           +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL-----RGEEKEQEIVARV 180

Query: 236 LSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRLP 295
           LS +  KE   R         P +   +T   T +     TT+     +C+K +    L 
Sbjct: 181 LSRFRPKEVKRRE--------PNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 296 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPVYSA 355
             + +S++ P        ++  +  +         Q+Y    + +  P   +  + + ++
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDP---KPEMRIKTS 300

Query: 356 SPCP-----------QPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPP 395
           SP P           + L  PS +   Q  ++AP V IR  IPV +APPP
Sbjct: 301 SPSPLSSSVERNCYSKLLPFPSFVLNHQ--KLAPAVHIRSVIPVCSAPPP 331

[Close]

BLAST of CmaCh20G004850 vs. TrEMBL
Match: A0A0R4J4I2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G145900 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 7.7e-132
Identity = 270/426 (63.38%), Postives = 313/426 (73.47%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 235
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSR- 295
           AL NY LKEK   +NSN P+PFPKK   Q PR TS  PPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 296 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTI 355
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q R PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTI 300

Query: 356 RTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 415
           RTA+PV+S  P P       Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 416 GESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 472
            E   VPK D PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDDSPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 408

[Close]

BLAST of CmaCh20G004850 vs. TrEMBL
Match: A0A0B2S3K5_GLYSO (Double-stranded RNA-binding protein 2 OS=Glycine soja GN=glysoja_008311 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 2.2e-131
Identity = 269/426 (63.15%), Postives = 313/426 (73.47%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 235
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSR- 295
           AL NY LKEK   +NSN P+PFPKK   Q PR TS  PPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 296 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTI 355
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q R PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTI 300

Query: 356 RTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 415
           RTA+PV+S  P P       Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 416 GESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 472
            E   VPK + PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDESPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 408

[Close]

BLAST of CmaCh20G004850 vs. TrEMBL
Match: A0A0A0LSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 6.5e-131
Identity = 274/429 (63.87%), Postives = 312/429 (72.73%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FE P +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN+L+NRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 235
           G +ELAGI F GEPAKNKKQAEKNAA+AAWS+LKQLAKE+ASSS+  E++DE EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRL 295
           AL NY  KEK   +N N  +PF KKL  QTPR TS   PPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 296 PPTKNNSTTLPSH--PLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPV 355
           P + N      S    L   G  PQKF A  A+ Y+P+QQ+R  C GI  PVTIRTA+PV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 356 YSASPCPQPLK-APSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGE---S 415
           +SA P PQP K  P Q+    PIRIAPPVSIRQAIPVFAAPP   RKE   + K E   +
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPP--VRKENPPVVKKEECPA 360

Query: 416 PTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVP-PNQVPETQNTK-----AINLDEE 472
           P  PK+DPP +                S PV++TVP P  V  T   +      +N  EE
Sbjct: 361 PAAPKEDPPAL----------------SAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEE 411

[Close]

BLAST of CmaCh20G004850 vs. TrEMBL
Match: M5WM87_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 5.5e-130
Identity = 256/375 (68.27%), Postives = 285/375 (76.00%), Query Frame = 1


Query: 53  GGEMYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAE 112
           GGEMYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAE
Sbjct: 91  GGEMYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAE 150

Query: 113 HSAAEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLP 172
           HSAAE+ALN L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLP
Sbjct: 151 HSAAEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLP 210

Query: 173 VFTGSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVM 232
           VFTG++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE ASSS+  E++DE EQ+ 
Sbjct: 211 VFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQIT 270

Query: 233 IARALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPR 292
           IARAL  Y LKEK    N   P+ FPKK     PR TS  PP A TSKILP ICQK  PR
Sbjct: 271 IARALLTYRLKEK--MANPTAPILFPKKFPVHNPRPTSPQPPSAHTSKILPLICQKQAPR 330

Query: 293 SRLPPTKNNSTTLPS---HPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRT 352
           SRL     N   +PS    PL +    P +FPA GA PYVPI+Q R PC GI  PVTIRT
Sbjct: 331 SRLQSNATNDNRIPSSQPSPLESRVLRPHRFPAAGAAPYVPIRQLRTPCHGIAPPVTIRT 390

Query: 353 AVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGES 412
           AVPV+SA P P P   P Q     P+R+APPV++RQA+PVF+APP         + K + 
Sbjct: 391 AVPVFSAPPLPPPPVMPCQAMRVPPLRVAPPVTMRQAVPVFSAPP---------IRKDDP 450

Query: 413 PTVPKQDPPTIATED 424
           PT  K+DPP I  ED
Sbjct: 451 PTTRKEDPPIIVKED 454

[Close]

BLAST of CmaCh20G004850 vs. TrEMBL
Match: C6TJ54_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G075700 PE=2 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.4e-125
Identity = 262/425 (61.65%), Postives = 303/425 (71.29%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 235
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSR- 295
           AL NY LKEK   +NSN P+PFPKK   Q PR TS  PPPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSRH 240

Query: 296 ---LPPTKNNSTTLPSHPLTAC----GSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTI 355
                P + +        L+A     G    KFPA GA PYVPI+Q R PC+G+  PVTI
Sbjct: 241 LVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTI 300

Query: 356 RTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKG 415
           RTA+PV+  SP P       Q+  +  +R+APPV+IRQA+PVFA PPP  RK+       
Sbjct: 301 RTAIPVF--SPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKD------- 360

Query: 416 ESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKTV 472
           E   +PK +PPTI+     D L                P + PE + TK  N+  +   V
Sbjct: 361 EPVPIPKDEPPTISAPSPEDKL----------------PAKTPEAE-TKTENIPPKPDMV 398

[Close]

BLAST of CmaCh20G004850 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 409.1 bits (1050), Expect = 3.8e-114
Identity = 229/357 (64.15%), Postives = 268/357 (75.07%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SAVESSDEPEQVMIAR 235
           G++ELAGI F G+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS    E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 236 ALSNYCLKEKT-FRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKP---VP 295
           AL NY +KE     ++S+ P+PF KK   Q  R TS  P PATTS+ILPFIC K      
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 296 RSRLPPTKNNSTTLPSHPLTACGSHP-QKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTA 355
           RS L  T      + +   +     P Q+F  P   PYVP++Q+R  C G+  PVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 356 VPVYSASPCPQP-----------LKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPL 396
           VPV+SA P P P           +  PS +R + P+RIAPPV+IR A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]

BLAST of CmaCh20G004850 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 248.8 bits (634), Expect = 6.6e-66
Identity = 128/196 (65.31%), Postives = 151/196 (77.04%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGE+FESP +C TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE++LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 235
            ++ELAG+ F GE AK KKQAEKNAA+AAWSSLK++      SS     +E EQ  +AR 
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM------SSLDSQDEEKEQEAVARV 180

Query: 236 LSNYCLKEKTFRTNSN 252
           LS +  KE   R  +N
Sbjct: 181 LSRFKPKEVRRRETTN 190

[Close]

BLAST of CmaCh20G004850 vs. TAIR10
Match: AT3G26932.1 (AT3G26932.1 dsRNA-binding protein 3)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-63
Identity = 156/350 (44.57%), Postives = 211/350 (60.29%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGE+FESP +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+AL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 235
            ++ELAG+ F GE AK KKQAEKNAA+AAW SL+++ +           +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL-----RGEEKEQEIVARV 180

Query: 236 LSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRLP 295
           LS +  KE   R         P +   +T   T +     TT+     +C+K +    L 
Sbjct: 181 LSRFRPKEVKRRE--------PNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 296 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPVYSA 355
             + +S++ P        ++  +  +         Q+Y    + +  P   +  + + ++
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDP---KPEMRIKTS 300

Query: 356 SPCP-----------QPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPP 395
           SP P           + L  PS +   Q  ++AP V IR  IPV +APPP
Sbjct: 301 SPSPLSSSVERNCYSKLLPFPSFVLNHQ--KLAPAVHIRSVIPVCSAPPP 331

[Close]

BLAST of CmaCh20G004850 vs. TAIR10
Match: AT3G62800.1 (AT3G62800.1 double-stranded-RNA-binding protein 4)

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-30
Identity = 76/173 (43.93%), Postives = 99/173 (57.23%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           +YK QLQ  A +    LP Y++ REGP HAPRF+ +V F G+ F+S    PTL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           A+IA+ SL  + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPE 229
            ++E AG  F GE AK KK AE +AA  A+ S+K        S  + S  + +
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQED 168

[Close]

BLAST of CmaCh20G004850 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-18
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           ++K++LQE AQ+     P Y  V+EGP H   F+++V  +G  + S       + AE SA
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVR-SGLGHLPVF 175
           AE+AL  LA         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 176 TGSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAK 214
           T ++E+ GI + G   + KK AE +A   A  +++   K
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 173

[Close]

BLAST of CmaCh20G004850 vs. NCBI nr
Match: gi|657986387|ref|XP_008385320.1| (PREDICTED: double-stranded RNA-binding protein 2 [Malus domestica])

HSP 1 Score: 479.6 bits (1233), Expect = 6.5e-132
Identity = 272/427 (63.70%), Postives = 310/427 (72.60%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCTTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 235
           G +ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE ASSS+  E++DE EQ+ IAR
Sbjct: 121 GVVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRL 295
           AL NY +KEK    N   P+ FPKK   Q  R TS  PPPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRIKEKMTMANPTAPILFPKKFPVQNRRPTSPQPPPAHTSKILPLICQKQAPRSRY 240

Query: 296 PPT---KNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVP 355
                  N  T+  + PL +    PQ+FPA GA PYVPI+Q R PC GI  PVTIRTAVP
Sbjct: 241 QSNATHDNRVTSSQASPLDSRVMRPQRFPAAGAAPYVPIRQLRTPCHGIAPPVTIRTAVP 300

Query: 356 VYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGESPTV 415
           V+SA P P P   P Q     P+R+APPV++RQA+PVF+A PP+ + +     K ESP +
Sbjct: 301 VFSAPPLPPPHAMPCQTMRIPPLRVAPPVTMRQAVPVFSA-PPVKKDDPPTTRKEESPVI 360

Query: 416 PKQDPPTIATEDSADSLIADHSVASTPVSLTVPP-------NQVPETQNTKAINLDEETK 472
            K+DP  I  EDS   L  D  +     +  V P        QV ET    A +L EE+K
Sbjct: 361 VKEDPXIIVKEDSXIILKEDPPIIPKDPAAVVAPCVQNKPIGQVEETVRXAADDL-EESK 420

[Close]

BLAST of CmaCh20G004850 vs. NCBI nr
Match: gi|356539370|ref|XP_003538171.1| (PREDICTED: double-stranded RNA-binding protein 2 [Glycine max])

HSP 1 Score: 478.8 bits (1231), Expect = 1.1e-131
Identity = 270/426 (63.38%), Postives = 313/426 (73.47%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 235
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSR- 295
           AL NY LKEK   +NSN P+PFPKK   Q PR TS  PPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 296 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTI 355
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q R PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTI 300

Query: 356 RTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 415
           RTA+PV+S  P P       Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 416 GESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 472
            E   VPK D PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDDSPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 408

[Close]

BLAST of CmaCh20G004850 vs. NCBI nr
Match: gi|734417045|gb|KHN38762.1| (Double-stranded RNA-binding protein 2 [Glycine soja])

HSP 1 Score: 477.2 bits (1227), Expect = 3.2e-131
Identity = 269/426 (63.15%), Postives = 313/426 (73.47%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALNSL+NR PSHSLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAA-SSSAVESSDEPEQVMIAR 235
           G++ELAGI F GEPAKNKKQAEKNAA+AAWSSLKQLAKE A SS+  E++DE EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSR- 295
           AL NY LKEK   +NSN P+PFPKK   Q PR TS  PPPATTSKILP ICQK   RSR 
Sbjct: 181 ALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRH 240

Query: 296 -----LPPTKNNSTTLPSHPLT--ACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTI 355
                  P  ++++ +P  P T  + G    KFPA GA PYVPI+Q R PC+G+  PVTI
Sbjct: 241 LVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTI 300

Query: 356 RTAVPVYSASPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRK-ELSALPK 415
           RTA+PV+S  P P       Q+  +  +R+APPV+IRQA+PVFAAPPP  RK E   +PK
Sbjct: 301 RTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPK 360

Query: 416 GESPTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKT 472
            E   VPK + PTI+     D L                P + PET+ TK  N+  E +T
Sbjct: 361 DEPVAVPKDESPTISAPSLEDKL----------------PTKTPETE-TKTENIPPEPET 408

[Close]

BLAST of CmaCh20G004850 vs. NCBI nr
Match: gi|659071913|ref|XP_008462570.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo])

HSP 1 Score: 476.1 bits (1224), Expect = 7.2e-131
Identity = 272/427 (63.70%), Postives = 311/427 (72.83%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FE P +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN+L+NRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 235
           G +ELAGI F GEPAKNKKQAEKNAA+AAWS+LKQLAKE+ASSS+  E++DE EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRL 295
           AL NY  KEK   +N N  +PF KKL  QTPR TS   PPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 296 PPTKNNSTTLPSHP--LTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPV 355
           P + N      S    L   G  PQKF A  A+ Y+P+QQ+R  C GI  PVTIRTA+PV
Sbjct: 241 PFSANKIPISQSQTPVLEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 356 YSASPCPQPLK-APSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGE---S 415
           +SA P PQP K  P Q+    PIRIAPPVSIRQAIPVFAAPP   RKE   + K E   +
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPP--VRKENPPVVKKEECPA 360

Query: 416 PTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKA----INLDEETK 472
           P  PK+DPP +                S PV++  PP  V   +  +A    +N  EETK
Sbjct: 361 PAAPKEDPPAL----------------SAPVTVPSPPTVVSTAEVEQATFTVVNSPEETK 409

[Close]

BLAST of CmaCh20G004850 vs. NCBI nr
Match: gi|449443363|ref|XP_004139447.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus])

HSP 1 Score: 475.7 bits (1223), Expect = 9.4e-131
Identity = 274/429 (63.87%), Postives = 312/429 (72.73%), Query Frame = 1


Query: 56  MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 115
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE+FE P +C TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 116 AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 175
           AE+ALN+L+NRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 176 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSA-VESSDEPEQVMIAR 235
           G +ELAGI F GEPAKNKKQAEKNAA+AAWS+LKQLAKE+ASSS+  E++DE EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 236 ALSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRL 295
           AL NY  KEK   +N N  +PF KKL  QTPR TS   PPA TSKILP ICQK  PRSR 
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 296 PPTKNNSTTLPSH--PLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPV 355
           P + N      S    L   G  PQKF A  A+ Y+P+QQ+R  C GI  PVTIRTA+PV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 356 YSASPCPQPLK-APSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGE---S 415
           +SA P PQP K  P Q+    PIRIAPPVSIRQAIPVFAAPP   RKE   + K E   +
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPP--VRKENPPVVKKEECPA 360

Query: 416 PTVPKQDPPTIATEDSADSLIADHSVASTPVSLTVP-PNQVPETQNTK-----AINLDEE 472
           P  PK+DPP +                S PV++TVP P  V  T   +      +N  EE
Sbjct: 361 PAAPKEDPPAL----------------SAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEE 411

The following BLAST results are available for this feature:

BLAST of CmaCh20G004850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB2_ARATH	6.8e-113	64.15	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1	[more]
DRB6_ORYSJ	1.9e-99	51.38	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE...	[more]
DRB2_ORYSJ	8.1e-66	60.18	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE...	[more]
DRB5_ARATH	1.2e-64	65.31	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1	[more]
DRB3_ARATH	1.9e-62	44.57	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1	[more]

BLAST of CmaCh20G004850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0R4J4I2_SOYBN	7.7e-132	63.38	Uncharacterized protein OS=Glycine max GN=GLYMA_11G145900 PE=4 SV=1	[more]
A0A0B2S3K5_GLYSO	2.2e-131	63.15	Double-stranded RNA-binding protein 2 OS=Glycine soja GN=glysoja_008311 PE=4 SV=...	[more]
A0A0A0LSF2_CUCSA	6.5e-131	63.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1	[more]
M5WM87_PRUPE	5.5e-130	68.27	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 S...	[more]
C6TJ54_SOYBN	1.4e-125	61.65	Uncharacterized protein OS=Glycine max GN=GLYMA_12G075700 PE=2 SV=1	[more]

BLAST of CmaCh20G004850 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28380.1	3.8e-114	64.15	dsRNA-binding protein 2	[more]
AT5G41070.1	6.6e-66	65.31	dsRNA-binding protein 5	[more]
AT3G26932.1	1.1e-63	44.57	dsRNA-binding protein 3	[more]
AT3G62800.1	9.9e-30	43.93	double-stranded-RNA-binding protein 4	[more]
AT1G09700.1	3.9e-18	34.59	dsRNA-binding domain-like superfamily protein	[more]

BLAST of CmaCh20G004850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657986387\|ref\|XP_008385320.1\|	6.5e-132	63.70	PREDICTED: double-stranded RNA-binding protein 2 [Malus domestica]	[more]
gi\|356539370\|ref\|XP_003538171.1\|	1.1e-131	63.38	PREDICTED: double-stranded RNA-binding protein 2 [Glycine max]	[more]
gi\|734417045\|gb\|KHN38762.1\|	3.2e-131	63.15	Double-stranded RNA-binding protein 2 [Glycine soja]	[more]
gi\|659071913\|ref\|XP_008462570.1\|	7.2e-131	63.70	PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo]	[more]
gi\|449443363\|ref\|XP_004139447.1\|	9.4e-131	63.87	PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035194	posttranscriptional gene silencing by RNA
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G004850.1	CmaCh20G004850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 143..209 score: 4.7E-17coord: 57..123 score: 9.9
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 57..123 score: 1.0E-13coord: 143..207 score: 3.0
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 57..124 score: 2.2E-16coord: 143..209 score: 1.7
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 142..210 score: 10.8coord: 56..125 score: 12
None	No IPR available	PANTHER	PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	coord: 51..284 score: 8.0E
None	No IPR available	PANTHER	PTHR10910:SF94	SUBFAMILY NOT NAMED	coord: 51..284 score: 8.0E
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 143..212 score: 1.24E-16coord: 54..123 score: 4.24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G004850	CmoCh20G005210	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G004850	CmoCh02G008950	Cucurbita moschata (Rifu)	cmacmoB553
CmaCh20G004850	Lsi03G000490	Bottle gourd (USVL1VR-Ls)	cmalsiB525
CmaCh20G004850	Cp4.1LG05g08230	Cucurbita pepo (Zucchini)	cmacpeB587
CmaCh20G004850	Cp4.1LG16g05380	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G004850	Bhi08G000147	Wax gourd	cmawgoB0704
CmaCh20G004850	Carg03239	Silver-seed gourd	carcmaB0473
CmaCh20G004850	Carg08583	Silver-seed gourd	carcmaB0998

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G004850	CmaCh02G008930	Cucurbita maxima (Rimu)	cmacmaB468

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G004850	Cucurbita maxima (Rimu)	cmacmaB261
CmaCh20G004850	Cucurbita maxima (Rimu)	cmacmaB485
CmaCh20G004850	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh20G004850	Cucurbita maxima (Rimu)	cmacmaB493
CmaCh20G004850	Cucumber (Gy14) v1	cgycmaB0842
CmaCh20G004850	Cucumber (Gy14) v1	cgycmaB1065
CmaCh20G004850	Cucurbita moschata (Rifu)	cmacmoB544
CmaCh20G004850	Cucurbita moschata (Rifu)	cmacmoB567
CmaCh20G004850	Cucurbita moschata (Rifu)	cmacmoB569
CmaCh20G004850	Wild cucumber (PI 183967)	cmacpiB551
CmaCh20G004850	Wild cucumber (PI 183967)	cmacpiB560
CmaCh20G004850	Cucumber (Chinese Long) v2	cmacuB547
CmaCh20G004850	Cucumber (Chinese Long) v2	cmacuB554
CmaCh20G004850	Cucumber (Chinese Long) v2	cmacuB561
CmaCh20G004850	Melon (DHL92) v3.5.1	cmameB489
CmaCh20G004850	Melon (DHL92) v3.5.1	cmameB520
CmaCh20G004850	Watermelon (Charleston Gray)	cmawcgB476
CmaCh20G004850	Watermelon (Charleston Gray)	cmawcgB481
CmaCh20G004850	Watermelon (Charleston Gray)	cmawcgB506
CmaCh20G004850	Watermelon (97103) v1	cmawmB513
CmaCh20G004850	Watermelon (97103) v1	cmawmB523
CmaCh20G004850	Watermelon (97103) v1	cmawmB524
CmaCh20G004850	Bottle gourd (USVL1VR-Ls)	cmalsiB506
CmaCh20G004850	Bottle gourd (USVL1VR-Ls)	cmalsiB518
CmaCh20G004850	Bottle gourd (USVL1VR-Ls)	cmalsiB524
CmaCh20G004850	Cucumber (Gy14) v2	cgybcmaB388
CmaCh20G004850	Cucumber (Gy14) v2	cgybcmaB790
CmaCh20G004850	Cucumber (Gy14) v2	cgybcmaB795
CmaCh20G004850	Melon (DHL92) v3.6.1	cmamedB568
CmaCh20G004850	Melon (DHL92) v3.6.1	cmamedB597
CmaCh20G004850	Cucumber (Chinese Long) v3	cmacucB0656
CmaCh20G004850	Cucumber (Chinese Long) v3	cmacucB0672
CmaCh20G004850	Cucumber (Chinese Long) v3	cmacucB0666
CmaCh20G004850	Watermelon (97103) v2	cmawmbB565
CmaCh20G004850	Watermelon (97103) v2	cmawmbB568
CmaCh20G004850	Watermelon (97103) v2	cmawmbB594
CmaCh20G004850	Wax gourd	cmawgoB0674
CmaCh20G004850	Wax gourd	cmawgoB0692