CmoCh13G002600 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Double-stranded RNA-binding protein 2
Location	Cmo_Chr13 : 2138640 .. 2143446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTTCTGTCTCACGAAAGCCTCAGGGCTCTCTCTCTCTCTTCTTTCTCTCTCTGGAAGTGAAAGGAAAAAAAACCCTTGAAAACCTTTGATCTTGCCGGATTTTTATCTCCGTCACCGACGACGGTGGGATTCTTCTTCTCTGGTTTTGATTTTTCTGACAGACTGCGGCGGATCGGATCTGGCTTAGGGTTTTTGGTTTCTGTGTGAAGCCCTATTGGAGGAGGGGGGAGGAGGTAAATTTGTGAGCTGAGGAGAGGAGTGAGGCGGAGCTGAGACTGAAACGGAGTAGAAATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTTCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGTGAGTCCTTTTTTACTTTGATCATATGGTTGTGTTTAGGTTTTGCTCTTGTGTCTCGGCTTGCTTCTCTGCTTGATCTTCATTTCTCGGTTGTTTTTTATTGAATGAATTGATGTTACTGTTTGCAGTAGGATTTGCTTCTGCGAGTTGAGAACGTTAGAGATTTGTTTTAGGTTTTTCGTTATGTTAGTGTTCGTTGTGCATTTTGTTCGTGTTCTTCTCCTCTGAGTTTCCTGTTATCATTTCCAGTAAGATAGGATACACAGAAATTGCACAATCGTACCTGTAGTGCTTAATCCTTGAATATCCTGTTCGGTGGGTTAACTAAGATCTAAAAGAGATGCTTGTTCTGCTCGTTGTGCCCTGGATTGGGTTGGGTTTTTTCCTTTAAATTATGATATGATCTTCGGATCTCTCTGATCGGCCGGAATTCTCTTGACTAGACCTACGGTTTAGGGTCGTGTTTGAACGAAAAGTGTGAACTCGTGACGCCTCTTTGAGGGTCCGTTCCATTAGAGGAGGTATCTAGTTTTGTTTACCTTATTATCTCGGAGCCAGCTGTCGGGAGTAATCTTCTCGGGCAAGTTGGTGTAATTAATTTGCTCATTAATGGGTTTGTCGGTCGTCCAATTGTGTTTTCGGTAGCTCCCAACTTTGGCCCATTTTATTTCTCCGATCTCATAAATGACCAGATGGGTGTCGTGGAAACGGCACGGACCAAGAATTCAACACCAATTGTGATAAACTTGTTGGAGGCTGAATTTCAGATAGAGATGATTCAAGTAGACCAATTAGAATTTAGGGGGTTGTGTCCATTATTTTTGTTCATAGAAGTCTTGGAGGCTTTAAAACTTGGGTGTATTCAATAATTTCATGTAATTACTCCTCCCCGCGTTTTTGTACAAATTGTTTGACTAAGCTTTTCTTCTTTGTTGTTCTTTAATTTTATTTCTCTCCTTTTGCCGTTCGAGGAAATGCGTGCATGTGTCTTTGTCAACTTTATTGTGTTTTAAAAAACCTTTGTTTATCTTGGTGTTTGAAGAGAGAGATGAAGAATTTTCGGTTGATTTGGGGGTTACTTTTCCATGAACGTCATTGTGTTCCAATAAGATGAATGTCCTATTGTGAGATCCCATATCGGTTGGAGAGGGAAAGAAACATTCCTTATAAGGGTATGCAAACCTCTCCCCAACAGACGCGTTTTCAAACCTTGAGGGGAGGACAATATCTGCTAGCGGTGGGCTTGGACTTGGGCTGTTACACCTATGGAGCTCTAGGTTCTATGGTATCGCCCCTAGTGATTGTTAATGAGGATTTGTTTGCGTTAAGATGCTCAAAATATCAAATATTTTGTTTCTGTTGGTCTCTGAGGCGCACATCCTGGTTAAATGATGTTCCTTAGGTGTATTATTTTTTCATTGCCTTGTTTACATTATCTTTATCTCTCTTTTGTGGCTGGTAATAACTCATTTAATAAAGTTTAATTGGTTTGAGGTTGTTAACTATGTTTCAAATTCTCTTACCCTTCGGTTAACTTAACTTTCAAAAATAGGAAATAATATCTTTTGAAATTGAAGAATGTATCTGATATTTGATATCACTATTAGCTGCCATGTTCTTAAACTACTTCACTTTTGTAAACTTCAAATTGTAACTTTGGATCTTTAATCCGAAAAGACGCGGCCATGAAATAGAGCTCTAACGATTAAGCGGTGCCTGGTGGGTAAGATTGATGAACAGCACTTCCATTTTATGGAGTTTTACTATGCAAAGCAACAGATTAATGATCTAGTATGGAAGAATTGGAGCTTAGATAGCTTATTATTTGTATGCAGCATTACAGAAGTAGTTTTGAAAAAACTATGAAATGTACCTTTTAGAATTCAATTGAATTCAGTTTTAAACAGTAGAGGCATTACAAATCGAATTATGATGCTTGTGAGCTTCAAGTTCAGATTACCTCAGGTAAAATGGAATCTGCACTGCTCTTTTTTTATTAAAGAGTGAGAAAACTTGTTGCCCCTTAGAAATTGATCAATGGAGCCATAAAAACTTAAGTTACAGATTTCTTCAATTTGAAAGTATTATTGATGATGAAGATAGTTCTCTGGGCTGCAGATCTCTCAAATGAAATTATTATTTATATGTAACGTATTTCTAGGTTTTAAACACTGCTGAGAACATGAAGTACATTATGAATAATTGATAACATGACATGCATCCATACCAATAGTTTTTATTCCTTGTACACTATCTGCTGAAAAGTAAAATGCATACAAGATATTAGCATTTGATTATAGTAAAAGAAAAGATTCATGAAATCTACTAATCCCTCTTGGGCATAGAATTTGTCAGCTTCTCTCTTTTGATGTTGTTCTTTGGTCTGTTAAATGTTTTGATATGAATCAAAGATGCTGCTATGATATGCATGAGCTAACTTGGCCGACTTTTAGTTTAATTACTTACTATAATCCACCTATGATCAGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCTGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATGTGAGTTTTTATTTCTATATTTATTTTTTACTATTTGTATGTTACCATGGCTTAGCAATTTCAACGAGAAAACCCATCTTATTTTGTACGTATTTTGTGCAAATTAATGTATGGAACATGGAGATTAGATTCAAATGGGTTCTCTGCGATATGTTTATGGGAAAGTTCTTTATTATAGAGCCATTATTTCATATGGAAGCAAAGTATCCTGTTCTTAATCTGCTTCTTGCTTAAAAATTCAAATATTCTGGTGTTGAGAAAACATTTTGTTTTTGATTTTGGCTAGTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTGTTGAATTATCGCCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACCTTGCTGCTCCTGCGCCCGTGCCCTCACCGCGCACTGAGTCACCTGCTGAAGTAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAGCCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGATGAGGTGATTCATTAGAAAGAGACCACATAGGGGAGATTGTCGTATGGTTTTGCCATTAAGTTAGGTTATCTCTTCTTGTCTGCATCTTATTTTGAGTGTCAACCTTTTCTCTTTTCTTATTTTTTCGCCCCGTTTTGTTAAAAACTCGAGTTGTTGAGAGGTGGAAAAATTAGTATCAGCATCCCAATGCCATTTCAACAGCGACTGTGTCAACTTATGTACTTATATACTCGTATCTTTGGGCATGCTATCCCATCTTCTCCAAGAACTCTGCTCTAATCTGCATCCCCAAGATCAGCTCGATGATCCCTCGGGAGCCCTTGGGTGCAATGACATGTTATATTTGTCACCCAACATGTGAGATCCCACATCTGTTAGAGAGGAGAACAAAACATTCTTTATAAGAGTGTGTAAACCACTTCCTGCCAGAGACGTTTTAAAAACCTTGAAACTTTGAAGGAAAGCTTAAAAATGACAATATTTGCAACAGTAGAGATTTTCG

mRNA sequence

TTCCCTTTCTGTCTCACGAAAGCCTCAGGGCTCTCTCTCTCTCTTCTTTCTCTCTCTGGAAGTGAAAGGAAAAAAAACCCTTGAAAACCTTTGATCTTGCCGGATTTTTATCTCCGTCACCGACGACGGTGGGATTCTTCTTCTCTGGTTTTGATTTTTCTGACAGACTGCGGCGGATCGGATCTGGCTTAGGGTTTTTGGTTTCTGTGTGAAGCCCTATTGGAGGAGGGGGGAGGAGGTAAATTTGTGAGCTGAGGAGAGGAGTGAGGCGGAGCTGAGACTGAAACGGAGTAGAAATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTTCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCTGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTGTTGAATTATCGCCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACCTTGCTGCTCCTGCGCCCGTGCCCTCACCGCGCACTGAGTCACCTGCTGAAGTAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAGCCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGATGAGGTGATTCATTAGAAAGAGACCACATAGGGGAGATTGTCGTATGGTTTTGCCATTAAGTTAGGTTATCTCTTCTTGTCTGCATCTTATTTTGAGTGTCAACCTTTTCTCTTTTCTTATTTTTTCGCCCCGTTTTGTTAAAAACTCGAGTTGTTGAGAGGTGGAAAAATTAGTATCAGCATCCCAATGCCATTTCAACAGCGACTGTGTCAACTTATGTACTTATATACTCGTATCTTTGGGCATGCTATCCCATCTTCTCCAAGAACTCTGCTCTAATCTGCATCCCCAAGATCAGCTCGATGATCCCTCGGGAGCCCTTGGGTGCAATGACATGTTATATTTGTCACCCAACATGTGAGATCCCACATCTGTTAGAGAGGAGAACAAAACATTCTTTATAAGAGTGTGTAAACCACTTCCTGCCAGAGACGTTTTAAAAACCTTGAAACTTTGAAGGAAAGCTTAAAAATGACAATATTTGCAACAGTAGAGATTTTCG

Coding sequence (CDS)

ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTTCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCTGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTGTTGAATTATCGCCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACCTTGCTGCTCCTGCGCCCGTGCCCTCACCGCGCACTGAGTCACCTGCTGAAGTAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAGCCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGA

Homology

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BLAST of CmoCh13G002600 vs. Swiss-Prot
Match: DRB2_ARATH (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 3.8e-128
Identity = 255/362 (70.44%), Postives = 283/362 (78.18%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWSSLKQLAKE++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF KK  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A    I     +ALE  +  RPQ+  A      Y+P+ Q+R+ CHG+APPVTIRT 
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 MPVYSAPPLPQP-----LKLP-----PQQVIRVPPVRIAPPVSIRQAIPVFA-APPVRKE 351
           +PV+SAPP+P P      +LP     P  +   PPVRIAPPV+IR A+PVFA APPVR  
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIR 359

[Close]

BLAST of CmoCh13G002600 vs. Swiss-Prot
Match: DRB6_ORYSJ (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.3e-109
Identity = 224/351 (63.82%), Postives = 260/351 (74.07%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+Y C+REGPDHAPRFKA VNFNGE FE P + +TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL AL+ RGP +SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAGITFTG+PAKNKKQAEKNAA AAWSSL+QL ++ ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTS-PQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMAM+N     PFPKK  +Q  R T+ PQ   +  SKILPL   K+  RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A       A  +    + +P P+     A A  Y+PV  +R  CH +APPVT+RT+
Sbjct: 241 PESPAAS---DAASQTPFRPTESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTS 300

Query: 301 MPVYSAPPLPQP----LKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVR 347
           +PV+SAPPLP P     +LPP  +   PP+R+A PV IR A P+F    V+
Sbjct: 301 IPVFSAPPLPPPGARTQQLPP-LMSHPPPIRMASPVRIRPAPPLFTPSAVQ 347

[Close]

BLAST of CmoCh13G002600 vs. Swiss-Prot
Match: DRB2_ORYSJ (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 8.5e-72
Identity = 152/227 (66.96%), Postives = 171/227 (75.33%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGE FE P +CSTLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LS RGP  SLAA++LDETG+YKNLLQE A R G  LP YTT RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAK--ESASSSSEPE-NNDELEQIT 180
             VELAG+TFTG P K KKQA+KNAAMAAWS LKQL +  E +SSS  P+ ++D+ EQI 
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 181 IARALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTS 225
           +AR L +  Q      +N   T P  K+ Q  S RP+S +RP  P S
Sbjct: 181 VARTLASLNQ------TNGGKT-PQQKEKQQSSNRPSS-RRPSYPKS 219

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BLAST of CmoCh13G002600 vs. Swiss-Prot
Match: DRB5_ARATH (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.3e-67
Identity = 131/189 (69.31%), Postives = 148/189 (78.31%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWSSLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE 190
            L  ++ KE
Sbjct: 181 VLSRFKPKE 182

[Close]

BLAST of CmoCh13G002600 vs. Swiss-Prot
Match: DRB3_ARATH (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.3e-64
Identity = 166/365 (45.48%), Postives = 213/365 (58.36%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    ++  I++ R    Q     T+    L+C+K    +  
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLRSINLY 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALS--YIPVHQYRTSCHGIA------- 300
              A+              S++P PQ+F      L+     V      C   A       
Sbjct: 241 TNEAS--------------SSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLD 300

Query: 301 ---PPVTIRTTMPVYSAPPLPQPL--KLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVR 352
              P + I+T+ P   +  + +    KL P     +   ++AP V IR  IPV +APP +
Sbjct: 301 DPKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPK 337

[Close]

BLAST of CmoCh13G002600 vs. TrEMBL
Match: A0A0A0LSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 695.7 bits (1794), Expect = 3.5e-197
Identity = 373/416 (89.66%), Postives = 385/416 (92.55%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIP +QT ALEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPIPQSQTPALEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCPA 360
           PV+SAPPLPQP KLPPQQVIRVPP+RIAPPVSIRQAIPVFAAPPVRKEN P VKKE+CPA
Sbjct: 301 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 360

Query: 361 PAAPKEN---LAAP--APVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 412
           PAAPKE+   L+AP    VPSP T      VEQ T T+VNS +E KTLENLEELKI
Sbjct: 361 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]

BLAST of CmoCh13G002600 vs. TrEMBL
Match: M5WM87_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 9.6e-147
Identity = 285/360 (79.17%), Postives = 307/360 (85.28%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE PQYCSTLRQAEHSA
Sbjct: 94  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 153

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 154 AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 213

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+ASSSSEPENNDELEQITIAR
Sbjct: 214 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 273

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALL YR KEKMA  NP A I FPKK  + +PRPTSPQ P A TSKILPLICQK APRSR 
Sbjct: 274 ALLTYRLKEKMA--NPTAPILFPKKFPVHNPRPTSPQPPSAHTSKILPLICQKQAPRSRL 333

Query: 241 PFSA-NKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
             +A N   IP +Q S LE S   RP +F A  AA  Y+P+ Q RT CHGIAPPVTIRT 
Sbjct: 334 QSNATNDNRIPSSQPSPLE-SRVLRPHRFPAAGAA-PYVPIRQLRTPCHGIAPPVTIRTA 393

Query: 301 MPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCP 360
           +PV+SAPPLP P  + P Q +RVPP+R+APPV++RQA+PVF+APP+RK++ P  +KED P
Sbjct: 394 VPVFSAPPLPPP-PVMPCQAMRVPPLRVAPPVTMRQAVPVFSAPPIRKDDPPTTRKEDPP 448

[Close]

BLAST of CmoCh13G002600 vs. TrEMBL
Match: G7IRT5_MEDTR (Double-stranded RNA-binding motif protein OS=Medicago truncatula GN=MTR_2g094490 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 2.0e-144
Identity = 297/427 (69.56%), Postives = 337/427 (78.92%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LS+RGP HSLAA+ILDETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHLPVFT
Sbjct: 61  AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+ASSS+EPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR- 240
           ALLNYR KEKM+MSNPNA IPF KK QIQ+ RPTS Q P A TSKILPLICQK  PR+R 
Sbjct: 181 ALLNYRLKEKMSMSNPNARIPFQKKFQIQNIRPTSSQSP-ATTSKILPLICQKTGPRNRP 240

Query: 241 ---------------APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYR 300
                          A  +++K  +   Q+SA+E   T RP +F A A A  Y+P+ Q R
Sbjct: 241 SSATPNENPRSRHPQAAATSDKSILQQPQSSAIESRVT-RPLRFPA-AGAPPYVPIRQMR 300

Query: 301 TSCHGIAPPVTIRTTMPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPP 360
             CHGIAP V++RT +PV+SAPPLP P  +   Q+IR PPVRIAPPVSIRQA+PVFAAPP
Sbjct: 301 P-CHGIAPAVSVRTVIPVFSAPPLPPPTSV--HQIIRAPPVRIAPPVSIRQAVPVFAAPP 360

Query: 361 VRKENAPAVKKEDCPAPAAPKENLAAPAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLE 412
           +RK+  PA  ++D PA + P E           + + PA+++E D T   NS  + +TL+
Sbjct: 361 LRKDE-PAPIQKDLPASSTPVE-----------QDKLPAKILEMDKTE-NNSPPQPETLQ 408

[Close]

BLAST of CmoCh13G002600 vs. TrEMBL
Match: A5B1V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005501 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 9.9e-144
Identity = 301/422 (71.33%), Postives = 335/422 (79.38%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+ASSSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSN-PNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMA++N P+ T+ FPKK  IQ+ R  SPQ PP  TSKILPLICQK  PR+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 APF-SAN---------KIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHG 300
            P  +AN         K P+P +Q  AL+  A  RPQ+F A A A+ Y+P+ Q+RT  HG
Sbjct: 241 PPSPTANDDPRQQHQVKNPVPPSQPLALDVRAV-RPQRFPA-AGAVPYVPIRQFRTPYHG 300

Query: 301 IAPPVTIRTTMPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKEN 360
           IAPPVTIR  +PV+SAP    P  LPP QVIR P +RIAPPV +RQA+PVFAAPPVRKE+
Sbjct: 301 IAPPVTIRNAVPVFSAP----PSGLPP-QVIRAPHMRIAPPVCVRQAVPVFAAPPVRKED 360

Query: 361 APAVKKEDCPAPAAPKENLAAPAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEEL 412
              V+KED   P+A        A +PS  T+SPA V E  + T  N  QE + +++LE+L
Sbjct: 361 PLVVRKED---PSA--------ASLPSLPTKSPAHVEETGSAT-ANDLQEFEAVKSLEQL 403

[Close]

BLAST of CmoCh13G002600 vs. TrEMBL
Match: F6GU09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02810 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 4.2e-142
Identity = 297/432 (68.75%), Postives = 335/432 (77.55%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+A+SSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSN-PNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMA++N P+ T+ FPKK  IQ+ R  SPQ PP  TSKILPLICQK  PR+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 AP--------------------FSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIP 300
            P                     ++++ P+P +Q  AL+  A  RPQ+F A A A+ Y+P
Sbjct: 241 PPSPTANDGSMPSSQPRSRPTSTTSSENPVPPSQPLALDVRAV-RPQRFPA-AGAVPYVP 300

Query: 301 VHQYRTSCHGIAPPVTIRTTMPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPV 360
           + Q+RT  HGIAPPVTIR  +PV+SAP    P  LPP QVIR P +RIAPPV +RQA+PV
Sbjct: 301 IRQFRTPYHGIAPPVTIRNAVPVFSAP----PSGLPP-QVIRAPHMRIAPPVCVRQAVPV 360

Query: 361 FAAPPVRKENAPAVKKEDCPAPAAPKENLAAPAPVPSPRTESPAEVVEQDTTTLVNSQQE 412
           FAAPPVRKE+   V+KED   P+A        A +PS  T+SPA V E  + T  N  QE
Sbjct: 361 FAAPPVRKEDPLVVRKED---PSA--------ASLPSLPTKSPAHVEETGSAT-ANDLQE 413

[Close]

BLAST of CmoCh13G002600 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 459.5 bits (1181), Expect = 2.1e-129
Identity = 255/362 (70.44%), Postives = 283/362 (78.18%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWSSLKQLAKE++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF KK  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A    I     +ALE  +  RPQ+  A      Y+P+ Q+R+ CHG+APPVTIRT 
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 MPVYSAPPLPQP-----LKLP-----PQQVIRVPPVRIAPPVSIRQAIPVFA-APPVRKE 351
           +PV+SAPP+P P      +LP     P  +   PPVRIAPPV+IR A+PVFA APPVR  
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIR 359

[Close]

BLAST of CmoCh13G002600 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-68
Identity = 131/189 (69.31%), Postives = 148/189 (78.31%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWSSLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE 190
            L  ++ KE
Sbjct: 181 VLSRFKPKE 182

[Close]

BLAST of CmoCh13G002600 vs. TAIR10
Match: AT3G26932.1 (AT3G26932.1 dsRNA-binding protein 3)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-65
Identity = 166/365 (45.48%), Postives = 213/365 (58.36%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    ++  I++ R    Q     T+    L+C+K    +  
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLRSINLY 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALS--YIPVHQYRTSCHGIA------- 300
              A+              S++P PQ+F      L+     V      C   A       
Sbjct: 241 TNEAS--------------SSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLD 300

Query: 301 ---PPVTIRTTMPVYSAPPLPQPL--KLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVR 352
              P + I+T+ P   +  + +    KL P     +   ++AP V IR  IPV +APP +
Sbjct: 301 DPKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPK 337

[Close]

BLAST of CmoCh13G002600 vs. TAIR10
Match: AT3G62800.1 (AT3G62800.1 double-stranded-RNA-binding protein 4)

HSP 1 Score: 128.6 bits (322), Expect = 8.6e-30
Identity = 75/172 (43.60%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           +YK QLQ  A +    LP YA  REGP HAPRF+  V F G+ F+  ++  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++A+ +L+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDE 173
             VE AG  F+GE AK KK AE +AA  A+ S+K        S + P    E
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQE 167

[Close]

BLAST of CmoCh13G002600 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-18
Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  +         + AE SA
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFR-SGLGHLPVF 120
           AEVAL  L+         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIA 180
           T  VE+ GI +TG   + KK AE +A   A  +++   K + ++ +        E+ TI 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 181 RAL 183
            A+
Sbjct: 195 AAI 197

[Close]

BLAST of CmoCh13G002600 vs. NCBI nr
Match: gi|659071913|ref|XP_008462570.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo])

HSP 1 Score: 696.0 bits (1795), Expect = 3.8e-197
Identity = 371/414 (89.61%), Postives = 383/414 (92.51%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPI  +QT  LEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPISQSQTPVLEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCPA 360
           PV+SAPPLPQP KLPPQQVIRVPP+RIAPPVSIRQAIPVFAAPPVRKEN P VKKE+CPA
Sbjct: 301 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 360

Query: 361 PAAPKEN---LAAPAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 412
           PAAPKE+   L+AP  VPSP T      VEQ T T+VNS +E KTLENLEELKI
Sbjct: 361 PAAPKEDPPALSAPVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 412

[Close]

BLAST of CmoCh13G002600 vs. NCBI nr
Match: gi|449443363|ref|XP_004139447.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus])

HSP 1 Score: 695.7 bits (1794), Expect = 5.0e-197
Identity = 373/416 (89.66%), Postives = 385/416 (92.55%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIP +QT ALEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPIPQSQTPALEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCPA 360
           PV+SAPPLPQP KLPPQQVIRVPP+RIAPPVSIRQAIPVFAAPPVRKEN P VKKE+CPA
Sbjct: 301 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 360

Query: 361 PAAPKEN---LAAP--APVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 412
           PAAPKE+   L+AP    VPSP T      VEQ T T+VNS +E KTLENLEELKI
Sbjct: 361 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]

BLAST of CmoCh13G002600 vs. NCBI nr
Match: gi|1009115820|ref|XP_015874436.1| (PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 549.3 bits (1414), Expect = 5.8e-153
Identity = 302/413 (73.12%), Postives = 337/413 (81.60%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAK++ASSS EPENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKDTASSSPEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           AL  YR KEK+AM+NPNA IPFPKK  +QSPRPTSPQ PPA TSKILPLICQKAAPRSR 
Sbjct: 181 ALQIYRLKEKIAMANPNAPIPFPKKFPVQSPRPTSPQPPPATTSKILPLICQKAAPRSRP 240

Query: 241 PFSA-NKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
             +A N  P+        EG AT RP KF A A A  Y+P+ Q RT CHG+APPVTIRT 
Sbjct: 241 QLNAVNDSPLS-------EGHATTRPLKFPA-AGATPYVPIRQLRTPCHGVAPPVTIRTA 300

Query: 301 MPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCP 360
           +PV+SAPP P P  + P QV+R P VRIAPPV+IRQA+PVFA+PPVRKE+APA++KED  
Sbjct: 301 VPVFSAPPRPSPPAV-PCQVMRPPHVRIAPPVTIRQAVPVFASPPVRKEDAPAIRKED-- 360

Query: 361 APAAPKENLAAPAPVPSPRTESPAEVVEQDT-TTLVNSQQEAKTLENLEELKI 412
                      PA + +P  ++      ++T +T VN+ QE +T+++LE+LKI
Sbjct: 361 -----------PAAIVAPNMQNKLLAQREETGSTSVNNPQEVETVQSLEQLKI 391

[Close]

BLAST of CmoCh13G002600 vs. NCBI nr
Match: gi|1009115818|ref|XP_015874435.1| (PREDICTED: double-stranded RNA-binding protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 543.5 bits (1399), Expect = 3.2e-151
Identity = 302/417 (72.42%), Postives = 337/417 (80.82%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARIL----DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHL 120
           AEVALN+LSNRGP HSLAARIL    DETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHL
Sbjct: 61  AEVALNSLSNRGPSHSLAARILVSFLDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHL 120

Query: 121 PVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQI 180
           PVFTG VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAK++ASSS EPENNDELEQI
Sbjct: 121 PVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKDTASSSPEPENNDELEQI 180

Query: 181 TIARALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAP 240
           TIARAL  YR KEK+AM+NPNA IPFPKK  +QSPRPTSPQ PPA TSKILPLICQKAAP
Sbjct: 181 TIARALQIYRLKEKIAMANPNAPIPFPKKFPVQSPRPTSPQPPPATTSKILPLICQKAAP 240

Query: 241 RSRAPFSA-NKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVT 300
           RSR   +A N  P+        EG AT RP KF A A A  Y+P+ Q RT CHG+APPVT
Sbjct: 241 RSRPQLNAVNDSPLS-------EGHATTRPLKFPA-AGATPYVPIRQLRTPCHGVAPPVT 300

Query: 301 IRTTMPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKK 360
           IRT +PV+SAPP P P  + P QV+R P VRIAPPV+IRQA+PVFA+PPVRKE+APA++K
Sbjct: 301 IRTAVPVFSAPPRPSPPAV-PCQVMRPPHVRIAPPVTIRQAVPVFASPPVRKEDAPAIRK 360

Query: 361 EDCPAPAAPKENLAAPAPVPSPRTESPAEVVEQDT-TTLVNSQQEAKTLENLEELKI 412
           ED             PA + +P  ++      ++T +T VN+ QE +T+++LE+LKI
Sbjct: 361 ED-------------PAAIVAPNMQNKLLAQREETGSTSVNNPQEVETVQSLEQLKI 395

[Close]

BLAST of CmoCh13G002600 vs. NCBI nr
Match: gi|645217404|ref|XP_008225693.1| (PREDICTED: double-stranded RNA-binding protein 2 [Prunus mume])

HSP 1 Score: 531.9 bits (1369), Expect = 9.6e-148
Identity = 302/418 (72.25%), Postives = 333/418 (79.67%), Query Frame = 1


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+ASSSSEPENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALL YR KEKMA  NP A I FPKK  + + RPTSPQ P A TSKILPLICQK APRSR 
Sbjct: 181 ALLTYRLKEKMA--NPTAPILFPKKFPVHNARPTSPQPPSAHTSKILPLICQKQAPRSRL 240

Query: 241 PFSA-NKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
             +A N   IP +Q S LE S   RP +F A  AA  Y+P+ Q RT CHGIAPPVTIRT 
Sbjct: 241 QSNATNDNRIPSSQPSPLE-SRVLRPNRFPAAGAA-PYVPIRQLRTPCHGIAPPVTIRTA 300

Query: 301 MPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCP 360
           +PV+SAPPLP P  + P Q +RVPP+R+APPV++RQA+PVF+APP+RK++ P  +KED  
Sbjct: 301 VPVFSAPPLPPP-PVMPCQAMRVPPLRVAPPVTMRQAVPVFSAPPIRKDDPPTTRKED-- 360

Query: 361 APAAPKENLAA------PAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 412
            P   KE+L        PA + S         VE+  +   NS QE+KT+++LE+LKI
Sbjct: 361 PPIIVKEDLPVIRKADPPAVIASSPQNDLIAQVEETGSASSNSLQESKTVQSLEQLKI 411

The following BLAST results are available for this feature:

BLAST of CmoCh13G002600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB2_ARATH	3.8e-128	70.44	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1	[more]
DRB6_ORYSJ	2.3e-109	63.82	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE...	[more]
DRB2_ORYSJ	8.5e-72	66.96	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE...	[more]
DRB5_ARATH	6.3e-67	69.31	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1	[more]
DRB3_ARATH	2.3e-64	45.48	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1	[more]

BLAST of CmoCh13G002600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSF2_CUCSA	3.5e-197	89.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1	[more]
M5WM87_PRUPE	9.6e-147	79.17	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 S...	[more]
G7IRT5_MEDTR	2.0e-144	69.56	Double-stranded RNA-binding motif protein OS=Medicago truncatula GN=MTR_2g094490...	[more]
A5B1V2_VITVI	9.9e-144	71.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005501 PE=4 SV=1	[more]
F6GU09_VITVI	4.2e-142	68.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02810 PE=4 SV=...	[more]

BLAST of CmoCh13G002600 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28380.1	2.1e-129	70.44	dsRNA-binding protein 2	[more]
AT5G41070.1	3.6e-68	69.31	dsRNA-binding protein 5	[more]
AT3G26932.1	1.3e-65	45.48	dsRNA-binding protein 3	[more]
AT3G62800.1	8.6e-30	43.60	double-stranded-RNA-binding protein 4	[more]
AT1G09700.1	2.0e-18	32.79	dsRNA-binding domain-like superfamily protein	[more]

BLAST of CmoCh13G002600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071913\|ref\|XP_008462570.1\|	3.8e-197	89.61	PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo]	[more]
gi\|449443363\|ref\|XP_004139447.1\|	5.0e-197	89.66	PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus]	[more]
gi\|1009115820\|ref\|XP_015874436.1\|	5.8e-153	73.12	PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujub...	[more]
gi\|1009115818\|ref\|XP_015874435.1\|	3.2e-151	72.42	PREDICTED: double-stranded RNA-binding protein 2-like isoform X1 [Ziziphus jujub...	[more]
gi\|645217404\|ref\|XP_008225693.1\|	9.6e-148	72.25	PREDICTED: double-stranded RNA-binding protein 2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0070919	production of siRNA involved in chromatin silencing by small RNA
biological_process	GO:0051607	defense response to virus
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002600.1	CmoCh13G002600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 88..154 score: 4.5E-18coord: 2..68 score: 4.4
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 2..68 score: 3.4E-15coord: 88..153 score: 7.2
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 88..154 score: 1.9E-19coord: 2..69 score: 2.6
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 87..155 score: 10.946coord: 1..70 score: 11
None	No IPR available	PANTHER	PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	coord: 1..218 score: 2.9E
None	No IPR available	PANTHER	PTHR10910:SF94	SUBFAMILY NOT NAMED	coord: 1..218 score: 2.9E
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 2..68 score: 7.07E-17coord: 88..158 score: 1.16

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G002600	Cucsa.200460	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G002600	CmaCh12G008170	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002600	CmaCh13G002550	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002600	Cla003412	Watermelon (97103) v1	cmowmB191
CmoCh13G002600	Csa1G132060	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002600	MELO3C004886	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002600	ClCG01G013680	Watermelon (Charleston Gray)	cmowcgB172
CmoCh13G002600	CSPI01G13840	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002600	Lsi03G000490	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002600	Cp4.1LG16g05380	Cucurbita pepo (Zucchini)	cmocpeB192
CmoCh13G002600	Cp4.1LG20g07280	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002600	Cp4.1LG07g06720	Cucurbita pepo (Zucchini)	cmocpeB216
CmoCh13G002600	MELO3C004886.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002600	CsaV3_1G014030	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002600	Cla97C01G012730	Watermelon (97103) v2	cmowmbB193
CmoCh13G002600	Bhi08G000147	Wax gourd	cmowgoB0259
CmoCh13G002600	CsGy1G013850	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002600	Carg03239	Silver-seed gourd	carcmoB0458
CmoCh13G002600	Carg23710	Silver-seed gourd	carcmoB0234

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G002600	CmoCh12G008240	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G002600	CmoCh20G005210	Cucurbita moschata (Rifu)	cmocmoB179

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002600	Melon (DHL92) v3.6.1	cmomedB200
CmoCh13G002600	Cucumber (Chinese Long) v3	cmocucB0257
CmoCh13G002600	Watermelon (97103) v2	cmowmbB208
CmoCh13G002600	Bottle gourd (USVL1VR-Ls)	cmolsiB185