Carg23710 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23710
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Double-stranded RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_142 : 326825 .. 331369 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGTGAAGCCCTATTGGAGGAGGGGGGAGGAGGTAAATTTGTGAGCTGAGGAGAGAGGAGTGAGGCGGAGCTGAGACTGAATCGGAGTAGAAATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGTGAGTCCTTTTTTACTTTGATCATATGGTTGTGTTTAGGTTCTGCTCTTGTGTCTCGGCTTGATCTTCATTTCTCGGTTGGTTTTTTATTGAATGAATTGATGTTACTGTTTGCAGTAGGATTTGCTTCTGCAAGTTGAGAACGTTAGAGATTTGTTTTAGGTTTTTCGTTATGTTAGTGTTCGTTGTGCATTTTGTTCGTGTTCTTCTCCTCTGAGTTTCCTGTTATCATTTCCAGTAAGATAGAATACACAGAAATTGCACAATCGTACCTGTAGTGCTTAATCCTTGAATATTCTGTTCGGTGGGTTAACTAAGATCTAAAAGAGATACTTGTTCTGCTCGTTGTGCCCTGGATTGGGTTGGGTTTTTTTCCTTTAAATTATGATATGATCTTCGGATCTCTCTGATCGGCCGGAATTCTCTTGACTAGACCTACGGTTTAGGGTGGTGTTTGAACGAAAAGTGTGAACTCGTGACGCCTCTTTGAGGGTCCGTTCCATTAGAGGAGGTATCTAGTTTTGTTTACCTTATTATCTCGGAGCCAGCTGTCGCGAGTAATCTTCTCGGGCAAGTTGGTGTAATTAATTTGCTCATTAATGGGTTTGTCGGTCGTCCAATTGTGTTTTCGGTAGCTCCCAACTTTGGCCCATTTTATTTCTCCGATCTCATAAATGACCAGATGGGTGTCGTAGAAACGGCACGGACCAAGAATTCAACACCAATTGTGATAAACTTGTTGGAGGCTGAATTTCGGATAGAGATGATTCAAGTAGACCAATTAGAATTTAGGGGGTTGTGTCCATTATTTTTGTTCATAGAAGTCTTGGAGGCTTTAAAACTTGGGTGTATTCAATAATTTCATGTAATTACTCCTCCCCGCGTTTTTGTACAAATTGTTTGACTAAGCTTTTCTTCTTTGTTGTTCTTTAATTTTATTTCTCTCCTTTTGCCGTTCGAGGAAATGCGTGCATGTGTCTTTGTCATCTTTATTGTGTTTTAAAAACCTTTGTTTATCTTGGTGTTTGAAGAGAGAGACGAGGAATTTTCGGTTGATTTGGGGGTTACTTTTCCATGAACGTCATTATGTTCCAATAAGATGAATGTCCTACTGTGAGATCCCATATTGGTTTGGAGAGGGAAAGAAACATTCCTTATAAGAGTATGCAAACCTCTCTCCAGCAGACGCGTTTTCAAACCTTGAGGGAAGGACAATATCTGCTAGTGGTGGGCTTGGACTTGGGCTGTTACACCTATGGAGCTCTAGGTTCTATGGTATCGCCCCTAGTGATTGTTAATGAGGATTTGTTTGCGTTAAGATGCTCAAAATATCAAATATTTTGTTTCTGTTGGTCTCTGAGGCGCACATCCTGGTTAAATGATGTTCCTTAGGTGTATTATTTTTTCATTGCCTTGTTTACATTATCTTTATCTCTCTTTTGTGGCTGGTAATAACTCATTTAATAAAGTTTAATTGGTTTGAGGTTGTTAACTATGTTTCAAATTCTCTTACCCTTCGGTTAACTTAACTTTCAAAAATAGGAAATAATATCTTTTGAAATTGAAGAATGTATCTGATATTTGATATCACTATTAGCTGCCATGTTCTTAAACTACTTCACTTTTGTAAACTTCAAATTGTAACTTTGGATCTTTAATCCGAAAAGACGCGGCCATGAAATAGAGCTCTAACGATTAAGCGGTGCCTGGTGGGTAAGATTGATGAACAGCACTTCCATTTTATGGAGTTTTACTATGCAAAGCAACAGATTAATGATCTAGTATGGAAGAATTGGAGCTTAGATAGCTTATTATTTGTATGCAGCATTACAGAAGTAGTTTTGAAAAAACTATGAAATGTACCTTTTAGAATTCAATTGAATTCAGTTTTAAACAGTAGAGGCATTACAAATCGAATTATGATGCTTGTGAGCTTCAAGTTCAGATTACCTCAGGTCAAATGGAATCTGCACTGCTCTTTTTTATTAAAGAGTGAGAAAACTTGTTGCCCCTTAGAAATTGATCAATGGAGCCATAAAAACTTAAGTTACCGATTCTTCAATTTGAAAGTATTATTGATGATGAAGATAGTTCTCTGGGCTGCAGATCTCTCAAATGAAATTATTATTTATATGTAACGTATTTCTAGGTTTTAAACACTGCTGAGAACATGAAGTACATTATGAATAATTGATAACATGACATGCATCCATACCAATAGTTTTTATTCCTTGTACACTATCTGCTGAAAAGTAAAATGCATACAAGATATTAGCATTTGATTATAGTAAAAGAAAAGATTCATGAAATCTACTAATCCCTCTTGGTCATAGAATTTGTCAGCTTCTCTCTTTTGATGTTGTTCTTTGGTCTGTTAAATGTTTTGATATGAATCAAAGATGCTGCTATGATATGCATGAGCTAACTTGGCCGACTTTTAGTTTAATTACTTACTATAATCCACCTATGATCAGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCCGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATGTGAGTTTTTATTTCTATATTTATTTTTTACTATTTGTATGTTACCATGGCTTAGCTCTTCGGGAAATTTCCAAACGAACAATTTCAACGAGAAAACCCATCTTATTTTGTACGTATTTTTTGCAAATTAATGTATGGAACATGGAGATTAGATTCAAATGGGTTCTCTGCGATATGTTTATGGGAAAATTCTTTATTATAGAGCCATTATTTCATATGGAAGCAAAGTATCCTGTTCTTAATCTGCTTCTTGCTTAAAAATTCAAATATTCTGGTGTTGAGAAAACATTTTGTTTTTGATTTTGGCTAGTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTATTGAATTATCGGCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACGTTGCTGCTCCTGCGCCCGTGCCCGTGCCCTCACCGCCCACTGAGTCACCTGCTGAAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAACCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGATGAGGTGATTCATTAGAAAGAGACCACATAGGGGAGATTGTCGTATGGTTTTGCAGTAAAGTTAGGTTATCTCTTCTTGTCTGCATCTTATTTTGAGTGTCAACCTTTTCTCTTTTCTTTATTTTTTCGCCCCGTTTTGTTAAAAACTCGAGTTGTTGAGAGGTGGAAAAATTAGTATCAGCATCCCAATGCCATTTCAACAGCGACTGTGTCAACTTATGTACTTATATATTCGTATCTTTGGGCATGCTATCCCATCTTCTCCAAGAACTCTGCTCTAATCTGCATCCCGAGCTGATCCCTCGGGAGCCCTTGGGTGCAATGACATGTTATGTTTGTCACCCAACATGTGAGATCCCACTTCTGTTTGAGAGGAGAACAAAACATTCTTTTTATAAGGGTGCTTGAAACCTTGAAGGAAAGCTTAA

mRNA sequence

CTGTGTGAAGCCCTATTGGAGGAGGGGGGAGGAGGTAAATTTGTGAGCTGAGGAGAGAGGAGTGAGGCGGAGCTGAGACTGAATCGGAGTAGAAATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCCGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTATTGAATTATCGGCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACGTTGCTGCTCCTGCGCCCGTGCCCGTGCCCTCACCGCCCACTGAGTCACCTGCTGAAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAACCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGATGAGGTGATTCATTAGAAAGAGACCACATAGGGGAGATTGTCGTATGGTTTTGCAGTAAAGTTAGGTTATCTCTTCTTGTCTGCATCTTATTTTGAGTGTCAACCTTTTCTCTTTTCTTTATTTTTTCGCCCCGTTTTGTTAAAAACTCGAGTTGTTGAGAGGTGGAAAAATTAGTATCAGCATCCCAATGCCATTTCAACAGCGACTGTGTCAACTTATGTACTTATATATTCGTATCTTTGGGCATGCTATCCCATCTTCTCCAAGAACTCTGCTCTAATCTGCATCCCGAGCTGATCCCTCGGGAGCCCTTGGGTGCAATGACATGTTATGTTTGTCACCCAACATGTGAGATCCCACTTCTGTTTGAGAGGAGAACAAAACATTCTTTTTATAAGGGTGCTTGAAACCTTGAAGGAAAGCTTAA

Coding sequence (CDS)

ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGAAGTTGCTTCAATCTTCCCTCGTATGCCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGTGAGATCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCCGAGCACTCCGCTGCCGAGGTCGCTTTGAACGCCCTCTCTAACCGTGGTCCCCCTCATTCGCTTGCAGCTAGGATCCTGGATGAGACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCCCAAAGAGTTGGAGCGCCATTGCCTCAGTATACAACATTCAGATCAGGTCTTGGTCACCTACCTGTTTTTACCGGGATAGTAGAATTGGCTGGAATAACGTTTACTGGAGAACCCGCCAAGAACAAGAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCATTAAAACAATTGGCTAAAGAATCAGCAAGCTCTTCATCAGAACCAGAAAACAATGATGAACTGGAGCAGATCACTATAGCTCGAGCCTTATTGAATTATCGGCAAAAGGAAAAAATGGCAATGTCAAATCCAAATGCAACAATACCATTCCCCAAAAAGCTTCAAATTCAAAGTCCACGGCCAACTAGTCCCCAACGCCCCCCTGCTCCAACATCGAAGATTCTGCCCTTAATTTGCCAAAAAGCAGCTCCTCGTAGCAGAGCTCCCTTTTCAGCTAATAAAATCCCCATCCCACATGCCCAAACTTCTGCACTAGAAGGCTCTGCAACCCCCCGCCCCCAGAAGTTCAGCGCCGGAGCTGCTGCTCTTTCGTATATTCCTGTTCACCAGTATAGGACATCTTGCCATGGCATTGCCCCACCAGTTACAATTAGAACAACAATGCCTGTGTATTCTGCCCCTCCTCTACCACAGCCATTGAAGCTACCACCACAGCAAGTAATTCGAGTCCCACCGGTACGGATCGCCCCACCGGTTTCCATTAGGCAAGCAATTCCTGTCTTTGCTGCTCCCCCAGTGCGCAAGGAAAATGCTCCTGCAGTTAAAAAAGAAGACTGTCCAGCCCCAGCTGCTCCTAAAGAAAACGTTGCTGCTCCTGCGCCCGTGCCCGTGCCCTCACCGCCCACTGAGTCACCTGCTGAAGTAGAACAGGATACAACCACATTGGTGAACAGTCAGCAAGAAACCAAGACATTAGAAAACCTGGAAGAACTCAAAATTTGA

Protein sequence

MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSAAEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIARALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRAPFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTMPVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCPAPAAPKENVAAPAPVPVPSPPTESPAEVEQDTTTLVNSQQETKTLENLEELKI

Homology

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BLAST of Carg23710 vs. NCBI nr
Match: XP_023519811.1 (double-stranded RNA-binding protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 651.4 bits (1679), Expect = 2.1e-183
Identity = 406/416 (97.60%), Postives = 406/416 (97.60%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM
Sbjct: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360
           PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX
Sbjct: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360

Query: 361 XAAPKENVA----XXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
           XAAPKENVA    XXXXXXXXXXXXXXXXXX     TLVNSQQE KTLENLEELKI
Sbjct: 361 XAAPKENVAXXXXXXXXXXXXXXXXXXXXXXEQDTTTLVNSQQEAKTLENLEELKI 416

[Close]

BLAST of Carg23710 vs. NCBI nr
Match: XP_022964903.1 (double-stranded RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 649.8 bits (1675), Expect = 6.1e-183
Identity = 385/412 (93.45%), Postives = 386/412 (93.69%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM
Sbjct: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360
           PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXX ENAXXXXXXXXXX
Sbjct: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKENAXXXXXXXXXX 360

Query: 361 XAAPKENVAXXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
           X APKEN+A                       TLVNSQQE KTLENLEELKI
Sbjct: 361 XXAPKENLA-APAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 411

[Close]

BLAST of Carg23710 vs. NCBI nr
Match: XP_022970315.1 (double-stranded RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 646.4 bits (1666), Expect = 6.8e-182
Identity = 392/412 (95.15%), Postives = 394/412 (95.63%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM
Sbjct: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360
           PVYSAPPLPQPLKLPPQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN XXXXXXXXXX
Sbjct: 301 PVYSAPPLPQPLKLPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENXXXXXXXXXXX 360

Query: 361 XAAPKENVAXXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
             APKEN+A     XXXXXXXXX         TLVNS+QETKTLENLEELKI
Sbjct: 361 PTAPKENLA--APAXXXXXXXXXPAEVEQDTTTLVNSRQETKTLENLEELKI 410

[Close]

BLAST of Carg23710 vs. NCBI nr
Match: XP_022152917.1 (double-stranded RNA-binding protein 2-like [Momordica charantia])

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 301/314 (95.86%), Postives = 304/314 (96.82%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFS NKI IP +QT ALEGS T RPQKFSAG AALSYIPV Q+RTSCHGIAPPVTIRTTM
Sbjct: 241 PFSTNKISIPQSQTPALEGSGT-RPQKFSAG-AALSYIPVPQFRTSCHGIAPPVTIRTTM 300

Query: 301 PVYSAPPLPQPLKL 315
           PVYSAPPLPQP KL
Sbjct: 301 PVYSAPPLPQPSKL 312

[Close]

BLAST of Carg23710 vs. NCBI nr
Match: XP_004139447.1 (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus] >KGN64845.1 hypothetical protein Csa_1G132060 [Cucumis sativus])

HSP 1 Score: 582.0 bits (1499), Expect = 1.6e-162
Identity = 347/416 (83.41%), Postives = 355/416 (85.34%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIP +QT ALEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPIPQSQTPALEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360
           PV+SAPPLPQP KLP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN           
Sbjct: 301 PVFSAPPLPQPSKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPPVVKKEECPA 360

Query: 361 XAAPKENV----AXXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
                       A                       T+VNS +ETKTLENLEELKI
Sbjct: 361 PXXXXXXXXXLSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]

BLAST of Carg23710 vs. TAIR10
Match: AT2G28380.1 (dsRNA-binding protein 2)

HSP 1 Score: 435.3 bits (1118), Expect = 4.3e-122
Identity = 230/312 (73.72%), Postives = 254/312 (81.41%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWSSLKQLAKE++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF KK  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A    I     +ALE  +  RPQ+  A      Y+P+ Q+R+ CHG+APPVTIRT 
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 MPVYSAPPLPQP 312
           +PV+SAPP+P P
Sbjct: 301 VPVFSAPPMPPP 309

[Close]

BLAST of Carg23710 vs. TAIR10
Match: AT5G41070.1 (dsRNA-binding protein 5)

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-68
Identity = 131/189 (69.31%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWSSLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE 190
            L  ++ KE
Sbjct: 181 VLSRFKPKE 182

[Close]

BLAST of Carg23710 vs. TAIR10
Match: AT3G26932.1 (dsRNA-binding protein 3)

HSP 1 Score: 255.4 bits (651), Expect = 6.1e-68
Identity = 128/189 (67.72%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKE 190
            L  +R KE
Sbjct: 181 VLSRFRPKE 183

[Close]

BLAST of Carg23710 vs. TAIR10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4)

HSP 1 Score: 128.6 bits (322), Expect = 8.6e-30
Identity = 75/172 (43.60%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           +YK QLQ  A +    LP YA  REGP HAPRF+  V F G+ F+  ++  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++A+ +L+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDE 173
             VE AG  F+GE AK KK AE +AA  A+ S+K        S + P    E
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQE 167

[Close]

BLAST of Carg23710 vs. TAIR10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-18
Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  +         + AE SA
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFR-SGLGHLPVF 120
           AEVAL  L+         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIA 180
           T  VE+ GI +TG   + KK AE +A   A  +++   K + ++ +        E+ TI 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 181 RAL 183
            A+
Sbjct: 195 AAI 197

[Close]

BLAST of Carg23710 vs. Swiss-Prot
Match: sp|Q9SKN2|DRB2_ARATH (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 7.8e-121
Identity = 230/312 (73.72%), Postives = 254/312 (81.41%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWSSLKQLAKE++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF KK  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A    I     +ALE  +  RPQ+  A      Y+P+ Q+R+ CHG+APPVTIRT 
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 MPVYSAPPLPQP 312
           +PV+SAPP+P P
Sbjct: 301 VPVFSAPPMPPP 309

[Close]

BLAST of Carg23710 vs. Swiss-Prot
Match: sp|Q9AV50|DRB6_ORYSJ (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB6 PE=2 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 3.2e-106
Identity = 212/321 (66.04%), Postives = 243/321 (75.70%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+Y C+REGPDHAPRFKA VNFNGE FE P + +TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL AL+ RGP +SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAGITFTG+PAKNKKQAEKNAA AAWSSL+QL ++ ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTS-PQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMAM+N     PFPKK  +Q  R T+ PQ   +  SKILPL   K+  RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 APFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
               A       A  +    + +P P+     A A  Y+PV  +R  CH +APPVT+RT+
Sbjct: 241 PESPAAS---DAASQTPFRPTESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTS 300

Query: 301 MPVYSAPPLPQP----LKLPP 317
           +PV+SAPPLP P     +LPP
Sbjct: 301 IPVFSAPPLPPPGARTQQLPP 318

[Close]

BLAST of Carg23710 vs. Swiss-Prot
Match: sp|Q0DKP4|DRB2_ORYSJ (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB2 PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-67
Identity = 126/158 (79.75%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGE FE P +CSTLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LS RGP  SLAA++LDETG+YKNLLQE A R G  LP YTT RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAK 159
             VELAG+TFTG P K KKQA+KNAAMAAWS LKQL +
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPR 158

[Close]

BLAST of Carg23710 vs. Swiss-Prot
Match: sp|Q8GY79|DRB5_ARATH (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.5e-67
Identity = 131/189 (69.31%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWSSLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE 190
            L  ++ KE
Sbjct: 181 VLSRFKPKE 182

[Close]

BLAST of Carg23710 vs. Swiss-Prot
Match: sp|Q9LJF5|DRB3_ARATH (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-66
Identity = 128/189 (67.72%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+VNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKE 190
            L  +R KE
Sbjct: 181 VLSRFRPKE 183

[Close]

BLAST of Carg23710 vs. TrEMBL
Match: tr|A0A0A0LSF2|A0A0A0LSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.0e-162
Identity = 347/416 (83.41%), Postives = 355/416 (85.34%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPIP +QT ALEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPIPQSQTPALEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAXXXXXXXXXX 360
           PV+SAPPLPQP KLP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN           
Sbjct: 301 PVFSAPPLPQPSKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPPVVKKEECPA 360

Query: 361 XAAPKENV----AXXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
                       A                       T+VNS +ETKTLENLEELKI
Sbjct: 361 PXXXXXXXXXLSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]

BLAST of Carg23710 vs. TrEMBL
Match: tr|A0A1S3CHR7|A0A1S3CHR7_CUCME (double-stranded RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103500895 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 4.4e-161
Identity = 352/414 (85.02%), Postives = 360/414 (86.96%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAKESASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF KKLQIQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300
           PFSANKIPI  +QT  LEGS  PRPQKFSAG  ALSYIPV Q+RTSCHGIAPPVTIRT M
Sbjct: 241 PFSANKIPISQSQTPVLEGSG-PRPQKFSAG-TALSYIPVQQFRTSCHGIAPPVTIRTAM 300

Query: 301 PVYSAPPLPQPLKLPPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN--AXXXXXXXX 360
           PV+SAPPLPQP KLP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEN           
Sbjct: 301 PVFSAPPLPQPSKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPPVVKKEECPA 360

Query: 361 XXXAAPKENVAXXXXXXXXXXXXXXXXXXXXXXXTLVNSQQETKTLENLEELKI 413
           XXX        XXXXX                  T+VNS +ETKTLENLEELKI
Sbjct: 361 XXXXXXXXXXXXXXXXVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 412

[Close]

BLAST of Carg23710 vs. TrEMBL
Match: tr|A0A2I4EJH8|A0A2I4EJH8_9ROSI (double-stranded RNA-binding protein 2 OS=Juglans regia OX=51240 GN=LOC108990127 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 9.8e-137
Identity = 261/318 (82.08%), Postives = 274/318 (86.16%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQY TFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYITFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQL KE+  SSSEPENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLPKEAVGSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALL Y  KEKMAM+NPNA IPFP+K  IQSPRPTSPQ PPA TSKILPLICQK APR+R 
Sbjct: 181 ALLKYCLKEKMAMANPNAPIPFPRKFTIQSPRPTSPQTPPATTSKILPLICQKTAPRNRL 240

Query: 241 PFS-ANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
           P + AN   +  +Q  +LEG    RPQKF A  AA  Y+P+ Q+RT CHGIAPPVTIRT 
Sbjct: 241 PSTIANDGQVLPSQHYSLEGRGN-RPQKFPAAGAA-PYVPIRQFRTPCHGIAPPVTIRTA 300

Query: 301 MPVYSAPPLPQPLKLPPQ 318
           +PVYSAPPLP P K  PQ
Sbjct: 301 VPVYSAPPLPPPSKPTPQ 316

[Close]

BLAST of Carg23710 vs. TrEMBL
Match: tr|A0A2I4DIV6|A0A2I4DIV6_9ROSI (double-stranded RNA-binding protein 2-like OS=Juglans regia OX=51240 GN=LOC108980580 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.6e-131
Identity = 253/318 (79.56%), Postives = 272/318 (85.53%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELA ITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE+A+SSS+ ENNDELEQITIAR
Sbjct: 121 GTVELARITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSDTENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYR KEK+AM+NPNA IPFPKK  IQS RP SPQ     TSKILPLICQK APR+R 
Sbjct: 181 ALLNYRMKEKIAMANPNAPIPFPKKFPIQSLRPPSPQPASTTTSKILPLICQKTAPRNRP 240

Query: 241 P-FSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
           P  + N+  +   +TS+L+G    RPQKF A A A+ Y+P+ ++   CHGIA PVTIRT 
Sbjct: 241 PSTTGNESQLLTPETSSLDGWVA-RPQKFPA-AGAVPYVPIRRFSMPCHGIAQPVTIRTA 300

Query: 301 MPVYSAPPLPQPLKLPPQ 318
           +PVYSAPPLP P K  PQ
Sbjct: 301 VPVYSAPPLPMPSKPTPQ 316

[Close]

BLAST of Carg23710 vs. TrEMBL
Match: tr|A0A2P6QH96|A0A2P6QH96_ROSCH (Putative double-stranded RNA-binding domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0058811 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 4.7e-131
Identity = 252/312 (80.77%), Postives = 271/312 (86.86%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWSSLKQLAKE+ASSSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEHENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYR KEKM+M+NP A I FPKK   Q+PRPTSPQ P A TSKILPLICQK APRSR 
Sbjct: 181 ALLNYRLKEKMSMANPTAPILFPKKFPAQNPRPTSPQPPSAMTSKILPLICQKQAPRSRF 240

Query: 241 PFSA-NKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTT 300
             +A N+  +P + +S +E   T RPQ+F A  AA  Y+P+ Q RT CH +APPVTIRT+
Sbjct: 241 QSNATNESLVPTSHSSPVESRWT-RPQRFPAAGAA-PYVPIRQMRTPCHRMAPPVTIRTS 300

Query: 301 MPVYSAPPLPQP 312
           +PV+SAPPLP P
Sbjct: 301 VPVFSAPPLPPP 310

The following BLAST results are available for this feature:

BLAST of Carg23710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519811.1	2.1e-183	97.60	double-stranded RNA-binding protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022964903.1	6.1e-183	93.45	double-stranded RNA-binding protein 2-like [Cucurbita moschata]	[more]
XP_022970315.1	6.8e-182	95.15	double-stranded RNA-binding protein 2-like [Cucurbita maxima]	[more]
XP_022152917.1	1.2e-162	95.86	double-stranded RNA-binding protein 2-like [Momordica charantia]	[more]
XP_004139447.1	1.6e-162	83.41	PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus] >KGN64845.1 h...	[more]

BLAST of Carg23710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28380.1	4.3e-122	73.72	dsRNA-binding protein 2	[more]
AT5G41070.1	3.6e-68	69.31	dsRNA-binding protein 5	[more]
AT3G26932.1	6.1e-68	67.72	dsRNA-binding protein 3	[more]
AT3G62800.1	8.6e-30	43.60	double-stranded-RNA-binding protein 4	[more]
AT1G09700.1	2.0e-18	32.79	dsRNA-binding domain-like superfamily protein	[more]

BLAST of Carg23710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKN2\|DRB2_ARATH	7.8e-121	73.72	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE...	[more]
sp\|Q9AV50\|DRB6_ORYSJ	3.2e-106	66.04	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q0DKP4\|DRB2_ORYSJ	1.7e-67	79.75	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q8GY79\|DRB5_ARATH	6.5e-67	69.31	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE...	[more]
sp\|Q9LJF5\|DRB3_ARATH	1.1e-66	67.72	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE...	[more]

BLAST of Carg23710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSF2\|A0A0A0LSF2_CUCSA	1.0e-162	83.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132060 PE=4 SV=1	[more]
tr\|A0A1S3CHR7\|A0A1S3CHR7_CUCME	4.4e-161	85.02	double-stranded RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103500895 PE...	[more]
tr\|A0A2I4EJH8\|A0A2I4EJH8_9ROSI	9.8e-137	82.08	double-stranded RNA-binding protein 2 OS=Juglans regia OX=51240 GN=LOC108990127 ...	[more]
tr\|A0A2I4DIV6\|A0A2I4DIV6_9ROSI	1.6e-131	79.56	double-stranded RNA-binding protein 2-like OS=Juglans regia OX=51240 GN=LOC10898...	[more]
tr\|A0A2P6QH96\|A0A2P6QH96_ROSCH	4.7e-131	80.77	Putative double-stranded RNA-binding domain-containing protein OS=Rosa chinensis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23710-RA	Carg23710-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 88..154 e-value: 1.9E-19 score: 80.6 coord: 2..69 e-value: 2.6E-19 score: 80.1
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 2..68 e-value: 4.0E-15 score: 56.2 coord: 88..153 e-value: 8.0E-12 score: 45.6
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 11.771
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 87..155 score: 10.946
IPR014720	Double-stranded RNA-binding domain	CDD	cd00048	DSRM	coord: 88..153 e-value: 2.06069E-14 score: 66.9123
IPR014720	Double-stranded RNA-binding domain	CDD	cd00048	DSRM	coord: 2..68 e-value: 5.32131E-17 score: 74.2311
None	No IPR available	GENE3D	G3DSA:3.30.160.20		coord: 2..86 e-value: 3.6E-23 score: 83.5 coord: 88..170 e-value: 2.1E-21 score: 77.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 349..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..403
None	No IPR available	PANTHER	PTHR10910:SF141	DOUBLE-STRANDED RNA-BINDING PROTEIN 2	coord: 1..370
None	No IPR available	PANTHER	PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	coord: 1..370
None	No IPR available	SUPERFAMILY	SSF54768	dsRNA-binding domain-like	coord: 2..68
None	No IPR available	SUPERFAMILY	SSF54768	dsRNA-binding domain-like	coord: 88..158

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23710	Cla003412	Watermelon (97103) v1	carwmB0157
Carg23710	Csa1G132060	Cucumber (Chinese Long) v2	carcuB0185
Carg23710	MELO3C004886	Melon (DHL92) v3.5.1	carmeB0171
Carg23710	ClCG01G013680	Watermelon (Charleston Gray)	carwcgB0160
Carg23710	CSPI01G13840	Wild cucumber (PI 183967)	carcpiB0192
Carg23710	Cucsa.200460	Cucumber (Gy14) v1	carcgyB0205
Carg23710	CmaCh13G002550	Cucurbita maxima (Rimu)	carcmaB0223
Carg23710	CmaCh12G008170	Cucurbita maxima (Rimu)	carcmaB0222
Carg23710	CmoCh13G002600	Cucurbita moschata (Rifu)	carcmoB0234
Carg23710	CmoCh12G008240	Cucurbita moschata (Rifu)	carcmoB0233
Carg23710	Lsi03G000490	Bottle gourd (USVL1VR-Ls)	carlsiB149
Carg23710	Cp4.1LG20g07280	Cucurbita pepo (Zucchini)	carcpeB0239
Carg23710	Cp4.1LG07g06720	Cucurbita pepo (Zucchini)	carcpeB0240
Carg23710	CsGy1G013850	Cucumber (Gy14) v2	carcgybB0180
Carg23710	MELO3C004886.2	Melon (DHL92) v3.6.1	carmedB0174
Carg23710	CsaV3_1G014030	Cucumber (Chinese Long) v3	carcucB0192
Carg23710	Cla97C01G012730	Watermelon (97103) v2	carwmbB0173
Carg23710	Bhi08G000147	Wax gourd	carwgoB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None