CmoCh12G008240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G008240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDouble-stranded RNA-binding protein 2
LocationCmo_Chr12 : 7434940 .. 7438917 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCCCTTTCTCTCTCACAAACCAGCCTCGGGGTTCTCTCTCTCTCTCTCTGAAAGTGTGAGAAAAAAAAAACCCCTAAAAAGCTTTTGATCTCGCCGGATTTTCGTCTCTGTCAACAACGACGGTGTGAGAATCTTCTCTTGAGTTTTGATTTTTCTGCTAGATTACGGTGGATCAGATCTTGGTTAGGGTTTTTGGTTTCTGTGAAAAGCCCTAACGGAGGGAGGAGGAGAGGAGGAGGTAAATTTGTGAAGTGAGTGGAAGGAGGAGTGAAGCGGTGCTGAGACTGAATCGGAGCGGAAATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGTGAGTCTTGTTTGGTTTTCGTTTTTGTTCTTCGGCTTGCTTGATCTTCATTTCTTTGTTGTTTTTTCATGCGACGAATCAATGTTACTGTTTGCGGTAGGATTATTCGTGGAAATTAGCTAGTAGTTTTAGGTTTTTGTTTTGTTAGTATTGGTTGAGCATTTTGTTCTTGTTCTCTTCTTAAGATTCCTGATATCATTTCCGGTTTCTGCGGCTAAGAAGCGTAGATTATAGAGAAATTGCACAATCTGTGCGTCTTGTTAGCAATGGCACCTTTGCACCTCAGCTAGAGCTCTTAGTCTGCCAATATCTCGGTCGATGGGTTGATTAAGATCTTAGATATGGTTTTTTCTGCTATCTGGGGTTAAAATGATGGCTGTGACATGGTTTAGGTTGGGGTTTTTCTTCTCAGTTACGAGATGAACTTGTAATCTCTCTGATCGGCCGGAATTCTCTGATTAGGCCTACGGTTTAGGGTCATCTTCGAACGAAAAGTGTGACCTCGTGACGCTTCCTCGAGGTTCCGTTCCGTGAGAGGAGGTATCTAGTTTTGTTTACCTTATTATCTCGGAACCAGCTGTCGGGAGTAGTCTTCTTGGGCAAGGTTGTGTAATTAATTTTCTCATTAATGGGTTTGTCGGTCGTCCAATTGTGTCTTCGGTAGCTCCCAACTTTGGCTCATTTTATTTCTCCGATCTCATAAATGACCAGATGGGTATTGTAGCAACGGCAGGGACTAGGAATCCAGCACCAATTGTGATAAACTTGTTGGAGGTTGAATTTCAGATGGAGATGATGATTCATGTTTAACCAATTAGAAATTAGGAGGACATTGCCATTATCTCCGTGCATAAAAGTTTATAGGCTTTACAACTTCGGTTTTAAATGTAATTATTTCTCCCCAAGTTTCAGTAGAAATTGTTTGACTAAACTTTTCTTTGCTGTTTTTTAAATTATATGTCTCCTCTTTTGCCGTTCAAGCGAATATCATGGTGTTTGAAGAGGGAGATGAGAGATTTTAGATCGATTTCTGGGTTACTTTTCCTTGAACATTGTTATTTATGAGATTCATCTTCTGATATGAGGATGTGTTCTCTTCTGTATCATTTCATTTAATCGATGGAATTGTTTGCATATGGAGCTTTAGGTTCTATGTATGGCCTTAGTGATTTCAGTTAAATGAGAATATTTTTGCGATTGTAGCTTAAAATGGTAAATATTTTGTCCTTCGAGCTGCCCTCCCCGATTTTTGGTTTAATTATTTACTATAATCGTCTATGATCAGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACGGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCAGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATGTGAGTTTTTTTTTTTTTTTTTTAATGCCTACCTTGTATAACTATTATCCAGTGAAAAGAGAGAATAGACCATCTTATTTTGTGCATATTTTGTGCAAGTTAATGGTATGCAACCCGTATATGATGTTATTATATGCTCGAACATGTAGATTAGCGTTCAAACGATTCCTCTGCGACATGTTGATGCCGATGGTCTTTATTATATCGCCTAAATTTCCTATGGAAGCTAAATATCCTATGCTTGATGTGCTTATGGCATGCTTAAAAATTAAATATTTTGCCTTCATCGGTTTTTCTTGTGCGAGTCTGAGAGAACACACCATGGAATTCCTTCTAATAGATAATACCAATTGCGAACACTCCTTGTTGTGATTCAAAGTTGCCATAAGTTTATTCTAAGAATATTCTTATCTTATCATGGTGCCTATTTATTATATATATTCTGGTGTTGAGCTAACATTTTGTTTTAATTTTGGCTAGTGGCTAAGCAATCAGCGAGCTCGTCATCAGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAGGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAAAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCAAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAATTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCGATACCTGCTTTTGCTGCTCCCCCAGTACGCAAGGAAAGTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCTTCCGCACCCTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGGCAAACAGTCAGCAAGAAATTAAGACATTAGAGAACCTCGAACAACTCCAAATTTGATGAGTTGAATCATTAGAAAGACCACATAGGAGATCGTCGTATTGTTTTGCAGTAAAGTTAGGTTATCTCATCTTGTCCGCATCTTATTTTGAGTGTCAACCTTTTTTCTTTTCATCTTTTTTGCCCTGTTTTGTTCAAACTTGAGTTTAGAGGTGGAAAAGTTGGTATCAGCATCCCTGCAGCAGAAATGCCATTCATCAGCAACTGTGTCAACTTATGTACTTATATATTAGGTTGTCCTATCTTCTCCAAGAATTCTGTTCTGATTTATGCATGCCATCTTTGCATCCCAAGATAGGCTGATGAGAGCCCGAGGATGCATGGATGTCGTTAAGGTTGTCATCAAGAGTCTCTAGTTAACCACCTCGCCCATCGCTCGGGACCCTCATTTCCATTTTTCTGCATTCCTACATTTTCATGCATATATATATTTGCTGATCTTGTCGGAACAGTGATTCTAAAGATGCTCATGTTGTGGCTTCCCCCTGAAGGGGCCTTTCAAGAGGCATGGAATATTTCAGTTGCTGAAATTTGGAGTCGAAATTCTTGTTCGGAATGGAATGAATGATATTTGTATATCAGGTGGTGTATTGCAGTATTTTAAGGACATCCTTCCATTAGTAGCATAATTTAGATCCAATAATATGTGACTTGAAAGGCCAAGGCCCCATAAATGCATTATTTT

mRNA sequence

ATTTTCCCTTTCTCTCTCACAAACCAGCCTCGGGGTTCTCTCTCTCTCTCTCTGAAAGTGTGAGAAAAAAAAAACCCCTAAAAAGCTTTTGATCTCGCCGGATTTTCGTCTCTGTCAACAACGACGGTGTGAGAATCTTCTCTTGAGTTTTGATTTTTCTGCTAGATTACGGTGGATCAGATCTTGGTTAGGGTTTTTGGTTTCTGTGAAAAGCCCTAACGGAGGGAGGAGGAGAGGAGGAGGTAAATTTGTGAAGTGAGTGGAAGGAGGAGTGAAGCGGTGCTGAGACTGAATCGGAGCGGAAATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACGGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCAGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATTGGCTAAGCAATCAGCGAGCTCGTCATCAGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAGGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAAAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCAAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAATTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCGATACCTGCTTTTGCTGCTCCCCCAGTACGCAAGGAAAGTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCTTCCGCACCCTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGGCAAACAGTCAGCAAGAAATTAAGACATTAGAGAACCTCGAACAACTCCAAATTTGATGAGTTGAATCATTAGAAAGACCACATAGGAGATCGTCGTATTGTTTTGCAGTAAAGTTAGGTTATCTCATCTTGTCCGCATCTTATTTTGAGTGTCAACCTTTTTTCTTTTCATCTTTTTTGCCCTGTTTTGTTCAAACTTGAGTTTAGAGGTGGAAAAGTTGGTATCAGCATCCCTGCAGCAGAAATGCCATTCATCAGCAACTGTGTCAACTTATGTACTTATATATTAGGTTGTCCTATCTTCTCCAAGAATTCTGTTCTGATTTATGCATGCCATCTTTGCATCCCAAGATAGGCTGATGAGAGCCCGAGGATGCATGGATGTCGTTAAGGTTGTCATCAAGAGTCTCTAGTTAACCACCTCGCCCATCGCTCGGGACCCTCATTTCCATTTTTCTGCATTCCTACATTTTCATGCATATATATATTTGCTGATCTTGTCGGAACAGTGATTCTAAAGATGCTCATGTTGTGGCTTCCCCCTGAAGGGGCCTTTCAAGAGGCATGGAATATTTCAGTTGCTGAAATTTGGAGTCGAAATTCTTGTTCGGAATGGAATGAATGATATTTGTATATCAGGTGGTGTATTGCAGTATTTTAAGGACATCCTTCCATTAGTAGCATAATTTAGATCCAATAATATGTGACTTGAAAGGCCAAGGCCCCATAAATGCATTATTTT

Coding sequence (CDS)

ATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACGGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCAGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATTGGCTAAGCAATCAGCGAGCTCGTCATCAGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAGGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAAAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCAAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAATTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCGATACCTGCTTTTGCTGCTCCCCCAGTACGCAAGGAAAGTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCTTCCGCACCCTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGGCAAACAGTCAGCAAGAAATTAAGACATTAGAGAACCTCGAACAACTCCAAATTTGA
Homology
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BLAST of CmoCh12G008240 vs. Swiss-Prot
Match: DRB2_ARATH (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.8e-122
Identity = 263/419 (62.77%), Postives = 304/419 (72.55%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWS+LKQLAK+++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF K+  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKILIPQSPTSAVEG-SGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAM 300
               A    I +   +A+E  S   PQ+  A     Y+P++QFR+ C G+APPVTIRTA+
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP--PYVPMRQFRSQCHGMAPPVTIRTAV 300

Query: 301 PVYSAPPLPQP-----SKLP-----PQQVIRVPPVRIAPPVSIRQAIPAFA-APPVRKES 360
           PV+SAPP+P P     ++LP     P  +   PPVRIAPPV+IR A+P FA APPVR  +
Sbjct: 301 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 360

Query: 361 ---PVVKKEDCPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLE 404
              P V+  +   S+  ++E    S P  P      VE    T     +   K  E  E
Sbjct: 361 AVKPTVEAGETRISSVQEKE----SIPVLPDSLEIGVEGSTITITDCEKTASKETERAE 413

[Close]
BLAST of CmoCh12G008240 vs. Swiss-Prot
Match: DRB6_ORYSJ (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 6.6e-109
Identity = 231/378 (61.11%), Postives = 269/378 (71.16%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FE P + +TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL AL+ RGP +SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAGITFTG+PAKNKKQAEKNAA AAWS+L+QL +Q ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTS-PQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMAM+N     PFPK+  +Q  R T+ PQ   +  SKILPL   K+  RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 APFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMP 300
               A      Q+P    E S     +F A  A  Y+PV  FR  C  +APPVT+RT++P
Sbjct: 241 PESPAASDAASQTPFRPTE-SPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIP 300

Query: 301 VYSAPPLPQP----SKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKESPVVKKEDC 360
           V+SAPPLP P     +LPP  +   PP+R+A PV IR A P F    V+   P++  +  
Sbjct: 301 VFSAPPLPPPGARTQQLPP-LMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIK 360

Query: 361 PASTAPKEEPPAPSAPSQ 374
                  +E  +P  P Q
Sbjct: 361 DVQHQQIKETRSPVMPVQ 376

[Close]
BLAST of CmoCh12G008240 vs. Swiss-Prot
Match: DRB2_ORYSJ (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-71
Identity = 151/241 (62.66%), Postives = 171/241 (70.95%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FE P +CSTLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LS RGP  SLAA++LDETG+YKNLLQE A R G  LP YTT RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK--QSASSSSEPE-NNDELEQIT 180
             VELAG+TFTG P K KKQA+KNAAMAAWS LKQL +  + +SSS  P+ ++D+ EQI 
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 181 IARALLNY---------RQKEKMAMSN---------PNATIPFPKRLHIQSPRPTSPQRP 221
           +AR L +          +QKEK   SN         P +   F  RLH+Q  +   P  P
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRLHLQ--KHAYPSVP 239

[Close]
BLAST of CmoCh12G008240 vs. Swiss-Prot
Match: DRB5_ARATH (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.8e-66
Identity = 162/343 (47.23%), Postives = 204/343 (59.48%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWS+LK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE--------------KMAMSNPNATIPFPKRLHI------QSPRPTSPQR-- 240
            L  ++ KE                  SN +  I   + +++       S   ++P +  
Sbjct: 181 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 240

Query: 241 ----------PPAP-TSKILPLICQKAAPRSRAPFSANKILIPQSPTSAVEGSGTCPQKF 300
                     PP P +SKILP I Q     S+   +     +  S     E S    ++ 
Sbjct: 241 NSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQM 300

Query: 301 SAGAALSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPS 311
                  Y  V     +   +AP V +R+ +PV++APP P+P+
Sbjct: 301 PFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPP-PKPN 335

[Close]
BLAST of CmoCh12G008240 vs. Swiss-Prot
Match: DRB3_ARATH (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.4e-65
Identity = 169/373 (45.31%), Postives = 216/373 (57.91%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW +L+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    +R  I++ R    Q     T+    L+C+K       
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLR----- 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKF---SAGAALSYIPVQQFRASCRGIA-------- 300
             S N        T+    S   PQ+F             V+     C+  A        
Sbjct: 241 --SINLY------TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDD 300

Query: 301 --PPVTIRTA--MPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVR- 354
             P + I+T+   P+ S+      SKL P     +   ++AP V IR  IP  +APP + 
Sbjct: 301 PKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKP 346

[Close]
BLAST of CmoCh12G008240 vs. TrEMBL
Match: A0A0A0LSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 2.1e-194
Identity = 366/414 (88.41%), Postives = 381/414 (92.03%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF K+L IQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKI IPQS T A+EGSG  PQKFSAG ALSYIPVQQFR SC GIAPPVTIRTAMPV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKES-PVVKKEDCPAST 360
           +SAPPLPQPSKLPPQQVIRVPP+RIAPPVSIRQAIP FAAPPVRKE+ PVVKKE+CPA  
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPAPA 360

Query: 361 APKEEPPAPSA------PSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
           APKE+PPA SA      PS PT       EQAT T+ NS +E KTLENLE+L+I
Sbjct: 361 APKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]
BLAST of CmoCh12G008240 vs. TrEMBL
Match: A5B1V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005501 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 3.6e-146
Identity = 297/418 (71.05%), Postives = 333/418 (79.67%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK++ASSSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSN-PNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMA++N P+ T+ FPK+  IQ+ R  SPQ PP  TSKILPLICQK  PR+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 APF-SAN---------KILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIA 300
            P  +AN         K  +P S   A++     PQ+F A  A+ Y+P++QFR    GIA
Sbjct: 241 PPSPTANDDPRQQHQVKNPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIRQFRTPYHGIA 300

Query: 301 PPVTIRTAMPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKESPV 360
           PPVTIR A+PV+SAPP    S LPPQ VIR P +RIAPPV +RQA+P FAAPPVRKE P+
Sbjct: 301 PPVTIRNAVPVFSAPP----SGLPPQ-VIRAPHMRIAPPVCVRQAVPVFAAPPVRKEDPL 360

Query: 361 VKKEDCPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
           V +         KE+P A S PS PTKSPA VEE  + T AN  QE + +++LEQL+I
Sbjct: 361 VVR---------KEDPSAASLPSLPTKSPAHVEETGSAT-ANDLQEFEAVKSLEQLKI 403

[Close]
BLAST of CmoCh12G008240 vs. TrEMBL
Match: F6GU09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02810 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 6.8e-145
Identity = 298/428 (69.63%), Postives = 335/428 (78.27%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK++A+SSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSN-PNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMA++N P+ T+ FPK+  IQ+ R  SPQ PP  TSKILPLICQK  PR+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 APF-SANKILIPQS-----PTS--------------AVEGSGTCPQKFSAGAALSYIPVQ 300
            P  +AN   +P S     PTS              A++     PQ+F A  A+ Y+P++
Sbjct: 241 PPSPTANDGSMPSSQPRSRPTSTTSSENPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIR 300

Query: 301 QFRASCRGIAPPVTIRTAMPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFA 360
           QFR    GIAPPVTIR A+PV+SAPP    S LPPQ VIR P +RIAPPV +RQA+P FA
Sbjct: 301 QFRTPYHGIAPPVTIRNAVPVFSAPP----SGLPPQ-VIRAPHMRIAPPVCVRQAVPVFA 360

Query: 361 APPVRKESPVVKKEDCPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTL 408
           APPVRKE P+V +         KE+P A S PS PTKSPA VEE  + T AN  QE + +
Sbjct: 361 APPVRKEDPLVVR---------KEDPSAASLPSLPTKSPAHVEETGSAT-ANDLQEFEAV 413

[Close]
BLAST of CmoCh12G008240 vs. TrEMBL
Match: G7IRT5_MEDTR (Double-stranded RNA-binding motif protein OS=Medicago truncatula GN=MTR_2g094490 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.5e-144
Identity = 289/423 (68.32%), Postives = 334/423 (78.96%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LS+RGP HSLAA+ILDETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHLPVFT
Sbjct: 61  AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK++ASSS+EPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR- 240
           ALLNYR KEKM+MSNPNA IPF K+  IQ+ RPTS Q P A TSKILPLICQK  PR+R 
Sbjct: 181 ALLNYRLKEKMSMSNPNARIPFQKKFQIQNIRPTSSQSP-ATTSKILPLICQKTGPRNRP 240

Query: 241 ---------------APFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRAS 300
                          A  +++K ++ Q  +SA+E   T P +F A  A  Y+P++Q R  
Sbjct: 241 SSATPNENPRSRHPQAAATSDKSILQQPQSSAIESRVTRPLRFPAAGAPPYVPIRQMRP- 300

Query: 301 CRGIAPPVTIRTAMPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVR 360
           C GIAP V++RT +PV+SAPPLP P+ +   Q+IR PPVRIAPPVSIRQA+P FAAPP+R
Sbjct: 301 CHGIAPAVSVRTVIPVFSAPPLPPPTSV--HQIIRAPPVRIAPPVSIRQAVPVFAAPPLR 360

Query: 361 KESPVVKKEDCPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQ 408
           K+ P   ++D PAS+ P E+           K PA++ E    T  NS  + +TL++LEQ
Sbjct: 361 KDEPAPIQKDLPASSTPVEQ----------DKLPAKILEM-DKTENNSPPQPETLQSLEQ 408

[Close]
BLAST of CmoCh12G008240 vs. TrEMBL
Match: M5WM87_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 9.9e-144
Identity = 280/377 (74.27%), Postives = 308/377 (81.70%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE PQYCSTLRQAEHSA
Sbjct: 94  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 153

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 154 AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 213

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK++ASSSSEPENNDELEQITIAR
Sbjct: 214 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 273

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALL YR KEKMA  NP A I FPK+  + +PRPTSPQ P A TSKILPLICQK APRSR 
Sbjct: 274 ALLTYRLKEKMA--NPTAPILFPKKFPVHNPRPTSPQPPSAHTSKILPLICQKQAPRSRL 333

Query: 241 PFSA-NKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMP 300
             +A N   IP S  S +E     P +F A  A  Y+P++Q R  C GIAPPVTIRTA+P
Sbjct: 334 QSNATNDNRIPSSQPSPLESRVLRPHRFPAAGAAPYVPIRQLRTPCHGIAPPVTIRTAVP 393

Query: 301 VYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKES---------PVV 360
           V+SAPPLP P  + P Q +RVPP+R+APPV++RQA+P F+APP+RK+          P++
Sbjct: 394 VFSAPPLPPPPVM-PCQAMRVPPLRVAPPVTMRQAVPVFSAPPIRKDDPPTTRKEDPPII 453

Query: 361 KKEDCPASTAPKEEPPA 368
            KED P     K +PPA
Sbjct: 454 VKEDLP--VIRKADPPA 465

[Close]
BLAST of CmoCh12G008240 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 440.7 bits (1132), Expect = 1.0e-123
Identity = 263/419 (62.77%), Postives = 304/419 (72.55%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWS+LKQLAK+++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF K+  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKILIPQSPTSAVEG-SGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAM 300
               A    I +   +A+E  S   PQ+  A     Y+P++QFR+ C G+APPVTIRTA+
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP--PYVPMRQFRSQCHGMAPPVTIRTAV 300

Query: 301 PVYSAPPLPQP-----SKLP-----PQQVIRVPPVRIAPPVSIRQAIPAFA-APPVRKES 360
           PV+SAPP+P P     ++LP     P  +   PPVRIAPPV+IR A+P FA APPVR  +
Sbjct: 301 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 360

Query: 361 ---PVVKKEDCPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLE 404
              P V+  +   S+  ++E    S P  P      VE    T     +   K  E  E
Sbjct: 361 AVKPTVEAGETRISSVQEKE----SIPVLPDSLEIGVEGSTITITDCEKTASKETERAE 413

[Close]
BLAST of CmoCh12G008240 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-67
Identity = 162/343 (47.23%), Postives = 204/343 (59.48%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWS+LK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE--------------KMAMSNPNATIPFPKRLHI------QSPRPTSPQR-- 240
            L  ++ KE                  SN +  I   + +++       S   ++P +  
Sbjct: 181 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 240

Query: 241 ----------PPAP-TSKILPLICQKAAPRSRAPFSANKILIPQSPTSAVEGSGTCPQKF 300
                     PP P +SKILP I Q     S+   +     +  S     E S    ++ 
Sbjct: 241 NSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQM 300

Query: 301 SAGAALSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPS 311
                  Y  V     +   +AP V +R+ +PV++APP P+P+
Sbjct: 301 PFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPP-PKPN 335

[Close]
BLAST of CmoCh12G008240 vs. TAIR10
Match: AT3G26932.1 (AT3G26932.1 dsRNA-binding protein 3)

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-66
Identity = 169/373 (45.31%), Postives = 216/373 (57.91%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW +L+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    +R  I++ R    Q     T+    L+C+K       
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLR----- 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKF---SAGAALSYIPVQQFRASCRGIA-------- 300
             S N        T+    S   PQ+F             V+     C+  A        
Sbjct: 241 --SINLY------TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDD 300

Query: 301 --PPVTIRTA--MPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVR- 354
             P + I+T+   P+ S+      SKL P     +   ++AP V IR  IP  +APP + 
Sbjct: 301 PKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKP 346

[Close]
BLAST of CmoCh12G008240 vs. TAIR10
Match: AT3G62800.1 (AT3G62800.1 double-stranded-RNA-binding protein 4)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-29
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+  ++  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++A+ +L+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDE 173
             VE AG  F+GE AK KK AE +AA  A+ ++K        S + P    E
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQE 167

[Close]
BLAST of CmoCh12G008240 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-19
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  +         + AE SA
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFR-SGLGHLPVF 120
           AEVAL  L+         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIA 180
           T  VE+ GI +TG   + KK AE +A   A  A++   K + ++ +        E+ TI 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 181 RAL 183
            A+
Sbjct: 195 AAI 197

[Close]
BLAST of CmoCh12G008240 vs. NCBI nr
Match: gi|449443363|ref|XP_004139447.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus])

HSP 1 Score: 686.4 bits (1770), Expect = 3.0e-194
Identity = 366/414 (88.41%), Postives = 381/414 (92.03%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF K+L IQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKI IPQS T A+EGSG  PQKFSAG ALSYIPVQQFR SC GIAPPVTIRTAMPV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKES-PVVKKEDCPAST 360
           +SAPPLPQPSKLPPQQVIRVPP+RIAPPVSIRQAIP FAAPPVRKE+ PVVKKE+CPA  
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPAPA 360

Query: 361 APKEEPPAPSA------PSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
           APKE+PPA SA      PS PT       EQAT T+ NS +E KTLENLE+L+I
Sbjct: 361 APKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 414

[Close]
BLAST of CmoCh12G008240 vs. NCBI nr
Match: gi|659071913|ref|XP_008462570.1| (PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo])

HSP 1 Score: 682.6 bits (1760), Expect = 4.3e-193
Identity = 364/412 (88.35%), Postives = 379/412 (91.99%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF K+L IQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKI I QS T  +EGSG  PQKFSAG ALSYIPVQQFR SC GIAPPVTIRTAMPV
Sbjct: 241 PFSANKIPISQSQTPVLEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKES-PVVKKEDCPAST 360
           +SAPPLPQPSKLPPQQVIRVPP+RIAPPVSIRQAIP FAAPPVRKE+ PVVKKE+CPA  
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPAPA 360

Query: 361 APKEEPPAPSA----PSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
           APKE+PPA SA    PS PT       EQAT T+ NS +E KTLENLE+L+I
Sbjct: 361 APKEDPPALSAPVTVPSPPTVVSTAEVEQATFTVVNSPEETKTLENLEELKI 412

[Close]
BLAST of CmoCh12G008240 vs. NCBI nr
Match: gi|470110619|ref|XP_004291574.1| (PREDICTED: double-stranded RNA-binding protein 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 537.0 bits (1382), Expect = 2.9e-149
Identity = 299/428 (69.86%), Postives = 339/428 (79.21%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE P YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNYLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+ AKNKKQAEKNAAMAAWS+LKQLAK++ASSSSE ENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGDSAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEHENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR- 240
           ALLNYR KEKM+M+NP+  I FPK+   Q+PRPTSPQ P A TSKILPLICQK APRSR 
Sbjct: 181 ALLNYRLKEKMSMANPSGPILFPKKFPAQNPRPTSPQPPSAMTSKILPLICQKQAPRSRF 240

Query: 241 ---APFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRT 300
              A  + N+ L+P S +S VE   T PQ+F A  A+ Y+P++Q R  C  +APPVTIRT
Sbjct: 241 QSNASNATNESLVPSSHSSPVESRWTRPQRFPAAGAVPYVPIRQMRTPCHRMAPPVTIRT 300

Query: 301 AMPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRK----------- 360
           ++PV+SAPPLP P  L  +Q + VPP+R+APPV++RQA+P FAAPPVR+           
Sbjct: 301 SVPVFSAPPLPPPPGL-HRQTMCVPPIRVAPPVTMRQAVPVFAAPPVRRDDSKKDDLPTS 360

Query: 361 ---ESPVVKKEDCPASTAP---KEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTL 408
              ESP+V KE  PA  AP       PA  AP  P KS A+V E++ +T AN  QE KT+
Sbjct: 361 RKEESPIVPKEAAPAVIAPAVTAAASPAVIAPPLPNKSIAQVVEKSGSTSANDLQESKTV 420

[Close]
BLAST of CmoCh12G008240 vs. NCBI nr
Match: gi|1009115820|ref|XP_015874436.1| (PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 535.8 bits (1379), Expect = 6.6e-149
Identity = 298/409 (72.86%), Postives = 334/409 (81.66%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN+LSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK +ASSS EPENNDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKDTASSSPEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           AL  YR KEK+AM+NPNA IPFPK+  +QSPRPTSPQ PPA TSKILPLICQKAAPRSR 
Sbjct: 181 ALQIYRLKEKIAMANPNAPIPFPKKFPVQSPRPTSPQPPPATTSKILPLICQKAAPRSRP 240

Query: 241 PFSANKILIPQSPTSAVEGSGTC-PQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMP 300
             +A    +  SP S  EG  T  P KF A  A  Y+P++Q R  C G+APPVTIRTA+P
Sbjct: 241 QLNA----VNDSPLS--EGHATTRPLKFPAAGATPYVPIRQLRTPCHGVAPPVTIRTAVP 300

Query: 301 VYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKE-SPVVKKEDCPAS 360
           V+SAPP P P  + P QV+R P VRIAPPV+IRQA+P FA+PPVRKE +P ++KED    
Sbjct: 301 VFSAPPRPSPPAV-PCQVMRPPHVRIAPPVTIRQAVPVFASPPVRKEDAPAIRKED---- 360

Query: 361 TAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
                 P A  AP+   K  A+ EE  +T++ N+ QE++T+++LEQL+I
Sbjct: 361 ------PAAIVAPNMQNKLLAQREETGSTSV-NNPQEVETVQSLEQLKI 391

[Close]
BLAST of CmoCh12G008240 vs. NCBI nr
Match: gi|1009115818|ref|XP_015874435.1| (PREDICTED: double-stranded RNA-binding protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 530.0 bits (1364), Expect = 3.6e-147
Identity = 298/413 (72.15%), Postives = 334/413 (80.87%), Query Frame = 1 

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARIL----DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHL 120
           AEVALN+LSNRGP HSLAARIL    DETGVYKNLLQEIAQRVGAPLPQYTT+RSGLGHL
Sbjct: 61  AEVALNSLSNRGPSHSLAARILVSFLDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHL 120

Query: 121 PVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQI 180
           PVFTG VELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK +ASSS EPENNDELEQI
Sbjct: 121 PVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKDTASSSPEPENNDELEQI 180

Query: 181 TIARALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAP 240
           TIARAL  YR KEK+AM+NPNA IPFPK+  +QSPRPTSPQ PPA TSKILPLICQKAAP
Sbjct: 181 TIARALQIYRLKEKIAMANPNAPIPFPKKFPVQSPRPTSPQPPPATTSKILPLICQKAAP 240

Query: 241 RSRAPFSANKILIPQSPTSAVEGSGTC-PQKFSAGAALSYIPVQQFRASCRGIAPPVTIR 300
           RSR   +A    +  SP S  EG  T  P KF A  A  Y+P++Q R  C G+APPVTIR
Sbjct: 241 RSRPQLNA----VNDSPLS--EGHATTRPLKFPAAGATPYVPIRQLRTPCHGVAPPVTIR 300

Query: 301 TAMPVYSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKE-SPVVKKED 360
           TA+PV+SAPP P P  + P QV+R P VRIAPPV+IRQA+P FA+PPVRKE +P ++KED
Sbjct: 301 TAVPVFSAPPRPSPPAV-PCQVMRPPHVRIAPPVTIRQAVPVFASPPVRKEDAPAIRKED 360

Query: 361 CPASTAPKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 408
                     P A  AP+   K  A+ EE  +T++ N+ QE++T+++LEQL+I
Sbjct: 361 ----------PAAIVAPNMQNKLLAQREETGSTSV-NNPQEVETVQSLEQLKI 395

The following BLAST results are available for this feature:
BLAST of CmoCh12G008240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB2_ARATH1.8e-12262.77Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1[more]
DRB6_ORYSJ6.6e-10961.11Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE... [more]
DRB2_ORYSJ1.4e-7162.66Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE... [more]
DRB5_ARATH1.8e-6647.23Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1[more]
DRB3_ARATH3.4e-6545.31Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=1 SV=1[more]
BLAST of CmoCh12G008240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSF2_CUCSA2.1e-19488.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132060 PE=4 SV=1[more]
A5B1V2_VITVI3.6e-14671.05Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005501 PE=4 SV=1[more]
F6GU09_VITVI6.8e-14569.63Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02810 PE=4 SV=... [more]
G7IRT5_MEDTR1.5e-14468.32Double-stranded RNA-binding motif protein OS=Medicago truncatula GN=MTR_2g094490... [more]
M5WM87_PRUPE9.9e-14474.27Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024708mg PE=4 S... [more]
BLAST of CmoCh12G008240 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28380.11.0e-12362.77 dsRNA-binding protein 2[more]
AT5G41070.11.0e-6747.23 dsRNA-binding protein 5[more]
AT3G26932.11.9e-6645.31 dsRNA-binding protein 3[more]
AT3G62800.13.2e-2942.44 double-stranded-RNA-binding protein 4[more]
AT1G09700.16.8e-1933.33 dsRNA-binding domain-like superfamily protein[more]
BLAST of CmoCh12G008240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443363|ref|XP_004139447.1|3.0e-19488.41PREDICTED: double-stranded RNA-binding protein 2 [Cucumis sativus][more]
gi|659071913|ref|XP_008462570.1|4.3e-19388.35PREDICTED: double-stranded RNA-binding protein 2 [Cucumis melo][more]
gi|470110619|ref|XP_004291574.1|2.9e-14969.86PREDICTED: double-stranded RNA-binding protein 2 [Fragaria vesca subsp. vesca][more]
gi|1009115820|ref|XP_015874436.1|6.6e-14972.86PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Ziziphus jujub... [more]
gi|1009115818|ref|XP_015874435.1|3.6e-14772.15PREDICTED: double-stranded RNA-binding protein 2-like isoform X1 [Ziziphus jujub... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0070919 production of siRNA involved in chromatin silencing by small RNA
biological_process GO:0051607 defense response to virus
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0008150 biological_process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G008240.1CmoCh12G008240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 88..154
score: 3.4E-18coord: 2..68
score: 2.2
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 88..152
score: 7.3E-12coord: 2..68
score: 8.6
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 88..154
score: 2.8E-19coord: 2..69
score: 4.0
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 1..70
score: 11.965coord: 87..155
score: 10
NoneNo IPR availableunknownCoilCoilcoord: 382..402
scor
NoneNo IPR availablePANTHERPTHR10910EUKARYOTE SPECIFIC DSRNA BINDING PROTEINcoord: 1..218
score: 2.2E
NoneNo IPR availablePANTHERPTHR10910:SF94SUBFAMILY NOT NAMEDcoord: 1..218
score: 2.2E
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 2..69
score: 7.39E-18coord: 88..157
score: 1.01