CmoCh19G002860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G002860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lipid transfer protein
Location	Cmo_Chr19 : 2095639 .. 2096613 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGACGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATGTAAGACTAATTCCTCCAAATCGCTCTTTCAATTTCGATTTTGAGAAAAATGAAACCCTAGGTAAATGAGGAACTGATCTATTTGAGTGAAATCTTTGATTTCTTTTTGTTTTCTCAGTGTCGAACTCTCCTGCTGGTTCTCCTGGTACGATTTCTTCTCTAAACGCTTTTCGATTAGTCTTAATCTTAGTCTGATGATACCGATCTGGATTTCGGAATGTTTGTGAGGAAATGTCTGAGCGTTTATTCTATTTGCATGCAGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAA

mRNA sequence

CCCACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGACGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGTTTATTCTATTTGCATGCAGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAA

Coding sequence (CDS)

ATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGACGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGTTTATTCTATTTGCATGCAGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAA

Homology

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BLAST of CmoCh19G002860 vs. Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.3e-32
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 1


Query: 1   MATAKLFLA---LFALAVFSLD-LSAVSAAHD---APAPAVDCSSLILNMADCLSFVSND 60
           MAT   F A   LF + + SL  +S + A+H    APAP+VDCS+LILNMADCLSFVS+ 
Sbjct: 1   MATHSSFTATTPLFLIVLLSLSSVSVLGASHHHATAPAPSVDCSTLILNMADCLSFVSSG 60

Query: 61  STTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASN 120
            T  KPEG+CC+GLKTVLKAD+ CLC+AFK+SA LGV LN+TKA +LPAACK+ AP+ + 
Sbjct: 61  GTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIAT 120

Query: 121 CKLSNSPAGSPAF---ILFACSDCAGKLA 140
           C LS +P+ +P     +  A  + AG LA
Sbjct: 121 CGLSVAPSTAPGLAPGVAAAGPETAGFLA 149

[Close]

BLAST of CmoCh19G002860 vs. Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-25
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 33  AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVL 92
           AVDCSSLILNMADCLSFV++ ST  KPEG+CC+GLKTV++   +CLC+AFKNS  LG+ L
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 93  NVTKALSLPAACKVSAPAASNCKLSNS---PAGSP 125
           +++KA SLP+ CKV+AP ++ C LS S   PA +P
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAP 118

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BLAST of CmoCh19G002860 vs. Swiss-Prot
Match: NLTL1_ORYSJ (Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LTPL1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 57/146 (39.04%), Postives = 75/146 (51.37%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSL----DLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTT 60
           MA A    A+  L V  L     +   +A+  APAPAVDC++  L +ADCL +V+   T 
Sbjct: 1   MAVAARAAAVACLLVVGLAAVAGVDGATASSPAPAPAVDCTAEALKLADCLDYVTPGKTA 60

Query: 61  -TKPEGSCCTGLKTVLK--ADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASN 120
            ++P   CC  +K  LK  A   CLC AF  S  L + +N+T+AL LPAAC   A A S 
Sbjct: 61  PSRPSKLCCGEVKGALKDSAAVGCLCAAF-TSKTLPLPINITRALHLPAACGADASAFSK 120

Query: 121 CKLSNSPAGSPAFILFACSDCAGKLA 140
           C    +PA SP+      S   G  A
Sbjct: 121 CL---APAPSPSVAPGTSSGSGGAAA 142

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BLAST of CmoCh19G002860 vs. Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.9e-09
Identity = 49/145 (33.79%), Postives = 69/145 (47.59%), Query Frame = 1


Query: 30  PAPAVDCSSLILNMADCLSFVS--NDSTTTKPEGSCCTGLKTVLKADADCLCQAFKN--S 89
           P+ A DC + ++NM  CLS+V+        KP+ +CC  L  ++++   CLC       +
Sbjct: 32  PSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMA 91

Query: 90  AQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPAFILFACSDCAGKLAKIGGGD 149
           AQLG+ ++  KAL LP  C V  P  S C L   P G+P     A  D  G       G 
Sbjct: 92  AQLGIKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAPV----AMGD-EGASPAYAPGS 151

Query: 150 CTGGERADGGSRTWKVGSDGSDGVS 171
            +G E + GG  +    S GSD  S
Sbjct: 152 MSGAE-SPGGFGSGPSASRGSDAPS 170

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BLAST of CmoCh19G002860 vs. Swiss-Prot
Match: YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           M + K+ +   A+A+  + +   +A  D      +C++ ++ MA CL +V   + +  P+
Sbjct: 1   MESRKIKVMATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPD 60

Query: 61  GSCCTGLKTVLKADADCLCQAF--KNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSN 120
             CC+GLK V+ +D  CLC     +N   LG+ +NV+ AL+LP+ C  +A       L +
Sbjct: 61  --CCSGLKQVINSDMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLH 120

Query: 121 SPAGSP 125
               SP
Sbjct: 121 LDPNSP 124

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BLAST of CmoCh19G002860 vs. TrEMBL
Match: A0A0A0K5X6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061200 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.8e-48
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT   FLALF+LA  +L  S +SAA+DAPAP VDCSSLILNMADCLSFVSNDSTT+KP+
Sbjct: 1   MATTNPFLALFSLAFLALQFSPLSAANDAPAPGVDCSSLILNMADCLSFVSNDSTTSKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS SP
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSISP 120

Query: 121 AGSPA 126
           A SPA
Sbjct: 121 ASSPA 125

[Close]

BLAST of CmoCh19G002860 vs. TrEMBL
Match: W9RLU9_9ROSA (Non-specific lipid-transfer protein-like protein OS=Morus notabilis GN=L484_024132 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.6e-37
Identity = 87/120 (72.50%), Postives = 102/120 (85.00%), Query Frame = 1


Query: 6   LFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCT 65
           LFL L AL + +    A  A+H APAPAVDCS+LILNMADCLSFVSN ST T PEG+CC 
Sbjct: 11  LFLCLSALVLAN---HAQGASHHAPAPAVDCSNLILNMADCLSFVSNGSTVTTPEGTCCN 70

Query: 66  GLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPA 125
           GLKTVLKADA+CLC+AFK+SAQLGVVLNVTKA++LP ACKVSAP+A+NC LS +P+G+PA
Sbjct: 71  GLKTVLKADANCLCEAFKSSAQLGVVLNVTKAMTLPTACKVSAPSAANCGLSITPSGAPA 127

[Close]

BLAST of CmoCh19G002860 vs. TrEMBL
Match: M5XFT3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012494mg PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.6e-36
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 24  SAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFK 83
           S+ H APAPAVDCSSLILNMADCLSFVSN ST TKP G+CC+GLKTVLKADA CLC+AFK
Sbjct: 9   SSHHAAPAPAVDCSSLILNMADCLSFVSNGSTDTKPAGTCCSGLKTVLKADAACLCEAFK 68

Query: 84  NSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           +SAQLGVVLN+TKA SLPAACKVSAP+A+NC LS +P  +P
Sbjct: 69  SSAQLGVVLNITKAASLPAACKVSAPSATNCGLSITPVAAP 109

[Close]

BLAST of CmoCh19G002860 vs. TrEMBL
Match: A0A059ASU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02679 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           M   K+ L LFALA   +  SA   +  AP P VDCS+L+LNMADCLSFVSN STT KPE
Sbjct: 1   MEATKICLLLFALAA-CVAASAHGVSSGAPPPGVDCSTLVLNMADCLSFVSNGSTTEKPE 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADA+C+C+AFK+SAQLGVVLNVTKALSLPAACKVSA +A+ C LS SP
Sbjct: 61  GTCCSGLKTVLKADAECICEAFKSSAQLGVVLNVTKALSLPAACKVSASSATKCALSISP 120

Query: 121 AGSPA 126
             +PA
Sbjct: 121 TSAPA 124

[Close]

BLAST of CmoCh19G002860 vs. TrEMBL
Match: G7KE52_MEDTR (Lipid transfer protein OS=Medicago truncatula GN=MTR_5g070360 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 82/125 (65.60%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 4   AKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSC 63
           +KL L LF LA+++LD S  +  H APAP+VDC++L+L MADCLSFV+N STTTKPEG+C
Sbjct: 3   SKLSLILFVLAIWTLDSSQGALTHQAPAPSVDCTNLVLTMADCLSFVTNGSTTTKPEGTC 62

Query: 64  CTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS---NSP 123
           C+GLK+VLK    CLC+AFK+SAQ GVVLNVTKA SLPAACKVSAP+A+ C LS    +P
Sbjct: 63  CSGLKSVLKTAPSCLCEAFKSSAQFGVVLNVTKATSLPAACKVSAPSATKCGLSEVTEAP 122

Query: 124 AGSPA 126
           A +PA
Sbjct: 123 ASAPA 127

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BLAST of CmoCh19G002860 vs. TAIR10
Match: AT5G64080.1 (AT5G64080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-33
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 1


Query: 1   MATAKLFLA---LFALAVFSLD-LSAVSAAHD---APAPAVDCSSLILNMADCLSFVSND 60
           MAT   F A   LF + + SL  +S + A+H    APAP+VDCS+LILNMADCLSFVS+ 
Sbjct: 1   MATHSSFTATTPLFLIVLLSLSSVSVLGASHHHATAPAPSVDCSTLILNMADCLSFVSSG 60

Query: 61  STTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASN 120
            T  KPEG+CC+GLKTVLKAD+ CLC+AFK+SA LGV LN+TKA +LPAACK+ AP+ + 
Sbjct: 61  GTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIAT 120

Query: 121 CKLSNSPAGSPAF---ILFACSDCAGKLA 140
           C LS +P+ +P     +  A  + AG LA
Sbjct: 121 CGLSVAPSTAPGLAPGVAAAGPETAGFLA 149

[Close]

BLAST of CmoCh19G002860 vs. TAIR10
Match: AT2G13820.1 (AT2G13820.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 8.5e-27
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 33  AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVL 92
           AVDCSSLILNMADCLSFV++ ST  KPEG+CC+GLKTV++   +CLC+AFKNS  LG+ L
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 93  NVTKALSLPAACKVSAPAASNCKLSNS---PAGSP 125
           +++KA SLP+ CKV+AP ++ C LS S   PA +P
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAP 118

[Close]

BLAST of CmoCh19G002860 vs. TAIR10
Match: AT1G36150.1 (AT1G36150.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 30  PAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLG 89
           P+ + DCSS+I +M DCLSF++  ST   P  +CC G+KTVL     CLC A ++S ++G
Sbjct: 39  PSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSREMG 98

Query: 90  VVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
            VL+ TKAL++P  C V  P   NC +S   A +P
Sbjct: 99  FVLDDTKALAMPKICNV--PIDPNCDVSTPAASTP 131

[Close]

BLAST of CmoCh19G002860 vs. TAIR10
Match: AT4G08670.1 (AT4G08670.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 29  APAP---AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNS 88
           APAP   + DCS++I +M DCL ++   S  TKPE SCCTG++TVL+ +  C+C    ++
Sbjct: 38  APAPGPSSSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVSA 97

Query: 89  AQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
            ++G+ LN T+AL+ P ACK+S  A  +C +  S A +P
Sbjct: 98  GEMGIELNSTRALATPKACKLSI-APPHCGIITSGATTP 135

[Close]

BLAST of CmoCh19G002860 vs. TAIR10
Match: AT5G09370.1 (AT5G09370.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 8   LALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGL 67
           +A F+ A  SL L  +S +      A DC +L++ +  CL F+S   T   P  SCC+ L
Sbjct: 1   MAYFSTAT-SLLLLVLSVSSPYVHGASDCDTLVITLFPCLPFISIGGTADTPTASCCSSL 60

Query: 68  KTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           K +L     CLC+  K  A LG+ LNVTK+ +LP ACK++AP  S C  S  PA  P
Sbjct: 61  KNILDTKPICLCEGLK-KAPLGIKLNVTKSATLPVACKLNAPPVSACD-SLPPASPP 114

[Close]

BLAST of CmoCh19G002860 vs. NCBI nr
Match: gi|449438175|ref|XP_004136865.1| (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT   FLALF+LA  +L  S +SAA+DAPAP VDCSSLILNMADCLSFVSNDSTT+KP+
Sbjct: 1   MATTNPFLALFSLAFLALQFSPLSAANDAPAPGVDCSSLILNMADCLSFVSNDSTTSKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS SP
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSISP 120

Query: 121 AGSPA 126
           A SPA
Sbjct: 121 ASSPA 125

[Close]

BLAST of CmoCh19G002860 vs. NCBI nr
Match: gi|659110437|ref|XP_008455223.1| (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 117/178 (65.73%), Postives = 134/178 (75.28%), Query Frame = 1


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT  LFLA+F+L+  +L  S +SAA+DAPAPAVDCSSLILNMADCLSFVSNDSTTTKP+
Sbjct: 1   MATTNLFLAIFSLSFLALHFSPLSAANDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS SP
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSISP 120

Query: 121 AGSPAFILFACSDCAGKLAKIGGGDCTGGERADGGSRTWKVGSDGS----DGVSWICN 175
           A SPA    A    A   + +   + TG         T  + S GS     GV+ +C+
Sbjct: 121 ASSPAVTPSATPKSAEAASPV-MNEPTGAPAPGKSGATGALASVGSVMAAIGVALLCS 177

[Close]

BLAST of CmoCh19G002860 vs. NCBI nr
Match: gi|703127431|ref|XP_010103830.1| (Non-specific lipid-transfer protein-like protein [Morus notabilis])

HSP 1 Score: 162.9 bits (411), Expect = 6.6e-37
Identity = 87/120 (72.50%), Postives = 102/120 (85.00%), Query Frame = 1


Query: 6   LFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCT 65
           LFL L AL + +    A  A+H APAPAVDCS+LILNMADCLSFVSN ST T PEG+CC 
Sbjct: 11  LFLCLSALVLAN---HAQGASHHAPAPAVDCSNLILNMADCLSFVSNGSTVTTPEGTCCN 70

Query: 66  GLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPA 125
           GLKTVLKADA+CLC+AFK+SAQLGVVLNVTKA++LP ACKVSAP+A+NC LS +P+G+PA
Sbjct: 71  GLKTVLKADANCLCEAFKSSAQLGVVLNVTKAMTLPTACKVSAPSAANCGLSITPSGAPA 127

[Close]

BLAST of CmoCh19G002860 vs. NCBI nr
Match: gi|596197351|ref|XP_007223600.1| (hypothetical protein PRUPE_ppa012494mg [Prunus persica])

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 24  SAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFK 83
           S+ H APAPAVDCSSLILNMADCLSFVSN ST TKP G+CC+GLKTVLKADA CLC+AFK
Sbjct: 9   SSHHAAPAPAVDCSSLILNMADCLSFVSNGSTDTKPAGTCCSGLKTVLKADAACLCEAFK 68

Query: 84  NSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           +SAQLGVVLN+TKA SLPAACKVSAP+A+NC LS +P  +P
Sbjct: 69  SSAQLGVVLNITKAASLPAACKVSAPSATNCGLSITPVAAP 109

[Close]

BLAST of CmoCh19G002860 vs. NCBI nr
Match: gi|645224006|ref|XP_008218904.1| (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Prunus mume])

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 6   LFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCT 65
           L +   ALA F       S+ H APAPAVDCS+LILNMADCLSFVSN ST TKP G+CC+
Sbjct: 10  LVVMAVALATFG---ECGSSHHAAPAPAVDCSTLILNMADCLSFVSNGSTDTKPAGTCCS 69

Query: 66  GLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           GLKTVLKADA CLC+AFK+SAQLGVVLN+TKA SLPAACKVSAP+A+NC LS +PAG+P
Sbjct: 70  GLKTVLKADAACLCEAFKSSAQLGVVLNITKAASLPAACKVSAPSATNCGLSITPAGAP 125

The following BLAST results are available for this feature:

BLAST of CmoCh19G002860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTL5_ARATH	6.3e-32	55.70	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]
NLTL2_ARATH	1.5e-25	62.11	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
NLTL1_ORYSJ	1.4e-10	39.04	Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LT...	[more]
LTPG2_ARATH	9.9e-09	33.79	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LT...	[more]
YLS3_ARATH	2.1e-06	29.37	Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1	[more]

BLAST of CmoCh19G002860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5X6_CUCSA	9.8e-48	84.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061200 PE=3 SV=1	[more]
W9RLU9_9ROSA	4.6e-37	72.50	Non-specific lipid-transfer protein-like protein OS=Morus notabilis GN=L484_0241...	[more]
M5XFT3_PRUPE	8.6e-36	79.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012494mg PE=3 SV=1	[more]
A0A059ASU7_EUCGR	1.9e-35	68.80	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02679 PE=3 SV=1	[more]
G7KE52_MEDTR	7.3e-35	65.60	Lipid transfer protein OS=Medicago truncatula GN=MTR_5g070360 PE=2 SV=1	[more]

BLAST of CmoCh19G002860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64080.1	3.6e-33	55.70	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G13820.1	8.5e-27	62.11	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G36150.1	1.8e-16	45.26	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT4G08670.1	8.8e-16	43.43	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G09370.1	2.4e-13	41.03	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmoCh19G002860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438175\|ref\|XP_004136865.1\|	1.4e-47	84.00	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis s...	[more]
gi\|659110437\|ref\|XP_008455223.1\|	1.4e-47	65.73	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis m...	[more]
gi\|703127431\|ref\|XP_010103830.1\|	6.6e-37	72.50	Non-specific lipid-transfer protein-like protein [Morus notabilis]	[more]
gi\|596197351\|ref\|XP_007223600.1\|	1.2e-35	79.21	hypothetical protein PRUPE_ppa012494mg [Prunus persica]	[more]
gi\|645224006\|ref\|XP_008218904.1\|	1.6e-35	72.27	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Prunus mu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002860.1	CmoCh19G002860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 91..108 score: 4.3E-6coord: 35..51 score: 4.3E-6coord: 58..72 score: 4.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 23..114 score: 2.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 36..114 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 33..116 score: 4.32
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 34..116 score: 5.3
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 6..125 score: 3.8
None	No IPR available	PANTHER	PTHR33044:SF27	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 6..125 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G002860	Cucsa.217810	Cucumber (Gy14) v1	cgycmoB0628
CmoCh19G002860	CmaCh11G016400	Cucurbita maxima (Rimu)	cmacmoB147
CmoCh19G002860	CmaCh19G002650	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G002860	Cla006403	Watermelon (97103) v1	cmowmB473
CmoCh19G002860	Csa7G061200	Cucumber (Chinese Long) v2	cmocuB523
CmoCh19G002860	MELO3C018657	Melon (DHL92) v3.5.1	cmomeB446
CmoCh19G002860	ClCG09G015260	Watermelon (Charleston Gray)	cmowcgB445
CmoCh19G002860	CSPI07G05410	Wild cucumber (PI 183967)	cmocpiB529
CmoCh19G002860	Lsi03G007750	Bottle gourd (USVL1VR-Ls)	cmolsiB466
CmoCh19G002860	Cp4.1LG15g02290	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G002860	Cp4.1LG04g07000	Cucurbita pepo (Zucchini)	cmocpeB493
CmoCh19G002860	MELO3C018657.2	Melon (DHL92) v3.6.1	cmomedB515
CmoCh19G002860	CsaV3_7G006350	Cucumber (Chinese Long) v3	cmocucB0627
CmoCh19G002860	Cla97C09G177280	Watermelon (97103) v2	cmowmbB535
CmoCh19G002860	Bhi05G000682	Wax gourd	cmowgoB0656
CmoCh19G002860	CsGy7G005010	Cucumber (Gy14) v2	cgybcmoB931
CmoCh19G002860	Carg23982	Silver-seed gourd	carcmoB1001
CmoCh19G002860	Carg24568	Silver-seed gourd	carcmoB0890

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G002860	Cucurbita moschata (Rifu)	cmocmoB109