Carg24568 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24568
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Non-specific lipid-transfer protein-like protein
Location	Cucurbita_argyrosperma_scaffold_075 : 3389 .. 4415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTTTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATGTAAGACTAATTCCTCCAAATTGCTCTTTCAATTTCGATTTTGAGAAAAATGAAACCCTAGGTAAATGAGGAACTGATCTATTTGAGTGAAATCTTTGATTTCTTTTTGTTTTCTCAGTGTCGAACTCTCCTGCTGGTTCTCCTGGTACGATTTCTTCTCTAAACGCTTTTCGATTAGTCTTAATCTTAGTCTGATGATACCGATCTGGATTTCGGAATGTTTGTGAGGAAATGTCTGAGCGTTTATTCTATTTGCATGCAGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAATTTATGGCGTGTGACTCAAAGCAGATTATAATATTTAATTTTTTTAGTCTTTC

mRNA sequence

ACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTTTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAATTTATGGCGTGTGACTCAAAGCAGATTATAATATTTAATTTTTTTAGTCTTTC

Coding sequence (CDS)

ATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGA

Protein sequence

MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPAIAPANSPKSEAAIAPAVNEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF

Homology

[Close]

BLAST of Carg24568 vs. NCBI nr
Match: XP_022963887.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 9.1e-75
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE
Sbjct: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP
Sbjct: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF 179
           AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF
Sbjct: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF 178

[Close]

BLAST of Carg24568 vs. NCBI nr
Match: XP_022967631.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 170/178 (95.51%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MATAKLFLALFALAV SLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE
Sbjct: 1   MATAKLFLALFALAVLSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP
Sbjct: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF 179
           AG PAI  XXXXXXXXXXXXXX EPTAAPGPGKSAATGAMVS+GSVIGAIGV LL SF
Sbjct: 121 AGPPAIAPXXXXXXXXXXXXXXNEPTAAPGPGKSAATGAMVSIGSVIGAIGVTLLRSF 178

[Close]

BLAST of Carg24568 vs. NCBI nr
Match: XP_023553599.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 171/178 (96.07%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MATAKLFLALF+LAV SLDLS VSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE
Sbjct: 1   MATAKLFLALFSLAVLSLDLSTVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP
Sbjct: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF 179
           A SP  XXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAM+SVGSVIGAIGVALLSSF
Sbjct: 121 ASSPXXXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMLSVGSVIGAIGVALLSSF 178

[Close]

BLAST of Carg24568 vs. NCBI nr
Match: XP_008455223.1 (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 141/177 (79.66%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT  LFLA+F+L+  +L  S +SAA+DAPAPAVDCSSLILNMADCLSFVSNDSTTTKP+
Sbjct: 1   MATTNLFLAIFSLSFLALHFSPLSAANDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS   
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSXXX 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSS 178
                 XXXXXXXXXXXXXXX  EPT AP PGKS ATGA+ SVGSV+ AIGVALL S
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXMNEPTGAPAPGKSGATGALASVGSVMAAIGVALLCS 177

[Close]

BLAST of Carg24568 vs. NCBI nr
Match: XP_022141909.1 (non-specific lipid-transfer protein-like protein At5g64080 [Momordica charantia])

HSP 1 Score: 198.4 bits (503), Expect = 2.1e-47
Identity = 131/183 (71.58%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MA  KL LAL ALAV +++ S V+ AHDAP PAVDCSSLILNMADCLSFVSNDSTTTKPE
Sbjct: 1   MAATKLSLALCALAVLAVNFSGVAPAHDAPPPAVDCSSLILNMADCLSFVSNDSTTTKPE 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           GSCCTGLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAA+NCKLS SP
Sbjct: 61  GSCCTGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAAANCKLSTSP 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTA-----APGPGKSAATGAMVSVGSVIGAIGVALL 179
                 XXXXXXXXXXXX      PT                   VSVGS+I AIG AL 
Sbjct: 121 XXXXXXXXXXXXXXXXXXAPEIGAPTTXXXXXXXXXXXXXXXXVFVSVGSLIAAIGAALF 180

[Close]

BLAST of Carg24568 vs. TAIR10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-32
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MATAKLFLA---LFALAVFSL-DLSAVSAAH---DAPAPAVDCSSLILNMADCLSFVSND 60
           MAT   F A   LF + + SL  +S + A+H    APAP+VDCS+LILNMADCLSFVS+ 
Sbjct: 1   MATHSSFTATTPLFLIVLLSLSSVSVLGASHHHATAPAPSVDCSTLILNMADCLSFVSSG 60

Query: 61  STTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASN 120
            T  KPEG+CC+GLKTVLKAD+ CLC+AFK+SA LGV LN+TKA +LPAACK+ AP+ + 
Sbjct: 61  GTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIAT 120

[Close]

BLAST of Carg24568 vs. TAIR10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-27
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 33  AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVL 92
           AVDCSSLILNMADCLSFV++ ST  KPEG+CC+GLKTV++   +CLC+AFKNS  LG+ L
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 93  NVTKALSLPAACKVSAPAASNCKLSNS---PAGSPAI 127
           +++KA SLP+ CKV+AP ++ C LS S   PA +P +
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPGL 120

[Close]

BLAST of Carg24568 vs. TAIR10
Match: AT4G08670.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 29  APAP---AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNS 88
           APAP   + DCS++I +M DCL ++   S  TKPE SCCTG++TVL+ +  C+C    ++
Sbjct: 38  APAPGPSSSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVSA 97

Query: 89  AQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
            ++G+ LN T+AL+ P ACK+S  A  +C +  S A +P
Sbjct: 98  GEMGIELNSTRALATPKACKLSI-APPHCGIITSGATTP 135

[Close]

BLAST of Carg24568 vs. TAIR10
Match: AT1G36150.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-16
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 30  PAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLG 89
           P+ + DCSS+I +M DCLSF++  ST   P  +CC G+KTVL     CLC A ++S ++G
Sbjct: 39  PSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSREMG 98

Query: 90  VVLNVTKALSLPAACKVSAPAASNCKLS 118
            VL+ TKAL++P  C V  P   NC +S
Sbjct: 99  FVLDDTKALAMPKICNV--PIDPNCDVS 124

[Close]

BLAST of Carg24568 vs. TAIR10
Match: AT5G09370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 8   LALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGL 67
           +A F+ A  SL L  +S +      A DC +L++ +  CL F+S   T   P  SCC+ L
Sbjct: 1   MAYFSTAT-SLLLLVLSVSSPYVHGASDCDTLVITLFPCLPFISIGGTADTPTASCCSSL 60

Query: 68  KTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           K +L     CLC+  K  A LG+ LNVTK+ +LP ACK++AP  S C  S  PA  P
Sbjct: 61  KNILDTKPICLCEGLK-KAPLGIKLNVTKSATLPVACKLNAPPVSACD-SLPPASPP 114

[Close]

BLAST of Carg24568 vs. Swiss-Prot
Match: sp|Q8VYI9|NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana OX=3702 GN=At5g64080 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MATAKLFLA---LFALAVFSL-DLSAVSAAH---DAPAPAVDCSSLILNMADCLSFVSND 60
           MAT   F A   LF + + SL  +S + A+H    APAP+VDCS+LILNMADCLSFVS+ 
Sbjct: 1   MATHSSFTATTPLFLIVLLSLSSVSVLGASHHHATAPAPSVDCSTLILNMADCLSFVSSG 60

Query: 61  STTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASN 120
            T  KPEG+CC+GLKTVLKAD+ CLC+AFK+SA LGV LN+TKA +LPAACK+ AP+ + 
Sbjct: 61  GTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIAT 120

[Close]

BLAST of Carg24568 vs. Swiss-Prot
Match: sp|Q9ZQI8|NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana OX=3702 GN=At2g13820 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.3e-26
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 33  AVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVL 92
           AVDCSSLILNMADCLSFV++ ST  KPEG+CC+GLKTV++   +CLC+AFKNS  LG+ L
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 93  NVTKALSLPAACKVSAPAASNCKLSNS---PAGSPAI 127
           +++KA SLP+ CKV+AP ++ C LS S   PA +P +
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPGL 120

[Close]

BLAST of Carg24568 vs. Swiss-Prot
Match: sp|Q9LZH5|LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=3702 GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 30  PAPAVDCSSLILNMADCLSFVS--NDSTTTKPEGSCCTGLKTVLKADADCLCQAFKN--S 89
           P+ A DC + ++NM  CLS+V+        KP+ +CC  L  ++++   CLC       +
Sbjct: 32  PSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMA 91

Query: 90  AQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           AQLG+ ++  KAL LP  C V  P  S C L   P G+P
Sbjct: 92  AQLGIKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAP 130

[Close]

BLAST of Carg24568 vs. Swiss-Prot
Match: sp|Q6ASY2|NLTL1_ORYSJ (Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LTPL1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSL----DLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTT 60
           MA A    A+  L V  L     +   +A+  APAPAVDC++  L +ADCL +V+   T 
Sbjct: 1   MAVAARAAAVACLLVVGLAAVAGVDGATASSPAPAPAVDCTAEALKLADCLDYVTPGKTA 60

Query: 61  -TKPEGSCCTGLKTVLK--ADADCLCQAFKNSAQLGVVLNVTKALSL 101
            ++P   CC  +K  LK  A   CLC AF  S  L + +N+T+AL L
Sbjct: 61  PSRPSKLCCGEVKGALKDSAAVGCLCAAF-TSKTLPLPINITRALHL 106

[Close]

BLAST of Carg24568 vs. Swiss-Prot
Match: sp|O64864|YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           M + K+ +   A+A+  + +   +A  D      +C++ ++ MA CL +V   + +  P+
Sbjct: 1   MESRKIKVMATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPD 60

Query: 61  GSCCTGLKTVLKADADCLCQAF--KNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSN 120
             CC+GLK V+ +D  CLC     +N   LG+ +NV+ AL+LP+ C  +A       L +
Sbjct: 61  --CCSGLKQVINSDMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLH 120

Query: 121 SPAGSP 125
               SP
Sbjct: 121 LDPNSP 124

[Close]

BLAST of Carg24568 vs. TrEMBL
Match: tr|A0A1S3C000|A0A1S3C000_CUCME (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucumis melo OX=3656 GN=LOC103495438 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.1e-55
Identity = 141/177 (79.66%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT  LFLA+F+L+  +L  S +SAA+DAPAPAVDCSSLILNMADCLSFVSNDSTTTKP+
Sbjct: 1   MATTNLFLAIFSLSFLALHFSPLSAANDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSP 120
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLS   
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSXXX 120

Query: 121 AGSPAIXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSS 178
                 XXXXXXXXXXXXXXX  EPT AP PGKS ATGA+ SVGSV+ AIGVALL S
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXMNEPTGAPAPGKSGATGALASVGSVMAAIGVALLCS 177

[Close]

BLAST of Carg24568 vs. TrEMBL
Match: tr|A0A0A0K5X6|A0A0A0K5X6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061200 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPE 60
           MAT   FLALF+LA  +L  S +SAA+DAPAP VDCSSLILNMADCLSFVSNDSTT+KP+
Sbjct: 1   MATTNPFLALFSLAFLALQFSPLSAANDAPAPGVDCSSLILNMADCLSFVSNDSTTSKPQ 60

Query: 61  GSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKV 107
           G+CC+GLKTVLKADADCLC+AFKNSAQLGVVLNVTKALSLPAACKV
Sbjct: 61  GTCCSGLKTVLKADADCLCEAFKNSAQLGVVLNVTKALSLPAACKV 106

[Close]

BLAST of Carg24568 vs. TrEMBL
Match: tr|A0A2I4GE41|A0A2I4GE41_9ROSI (non-specific lipid-transfer protein-like protein At5g64080 OS=Juglans regia OX=51240 GN=LOC109007088 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 99/181 (54.70%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 2   ATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEG 61
           A   L L +  LA+ ++D +  +++  APAP+VDCSSLILNMADCLSFVS  STTTKPEG
Sbjct: 3   AKLSLSLVMCVLAISAVDFAQGASSQHAPAPSVDCSSLILNMADCLSFVSEGSTTTKPEG 62

Query: 62  SCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPA 121
           +CC GLKTVLKADA CLC+AFK+SA LGVVLNVTKA++LPAACKVSAPAA+NC LS +PA
Sbjct: 63  NCCVGLKTVLKADAACLCEAFKSSASLGVVLNVTKAMALPAACKVSAPAAANCALSLTPA 122

Query: 122 GSPA----IXXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSS 179
            +P+                      E   +P PG S ++   +SVGS++  + VA  SS
Sbjct: 123 AAPSDLSPEASPVSVAAPPEATSGENEIAPSPAPGSSGSSVLAISVGSLLVGLVVASFSS 182

[Close]

BLAST of Carg24568 vs. TrEMBL
Match: tr|W9RLU9|W9RLU9_9ROSA (Non-specific lipid-transfer protein-like protein OS=Morus notabilis OX=981085 GN=L484_024132 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 101/180 (56.11%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 6   LFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCT 65
           LFL L AL + +    A  A+H APAPAVDCS+LILNMADCLSFVSN ST T PEG+CC 
Sbjct: 11  LFLCLSALVLAN---HAQGASHHAPAPAVDCSNLILNMADCLSFVSNGSTVTTPEGTCCN 70

Query: 66  GLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPA 125
           GLKTVLKADA+CLC+AFK+SAQLGVVLNVTKA++LP ACKVSAP+A+NC LS +P+G+PA
Sbjct: 71  GLKTVLKADANCLCEAFKSSAQLGVVLNVTKAMTLPTACKVSAPSAANCGLSITPSGAPA 130

Query: 126 I-------XXXXXXXXXXXXXXXXXEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF 179
           +                         P +APG G+S ++   +SV S++  + VA LS F
Sbjct: 131 LSPTESAPASTAVAPASGIGAINEQAPASAPG-GQSGSSVLTISVKSLLVGLVVASLSCF 186

[Close]

BLAST of Carg24568 vs. TrEMBL
Match: tr|A0A2P6PEB6|A0A2P6PEB6_ROSCH (Putative plant lipid transfer protein/Par allergen OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0226231 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 88/119 (73.95%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 6   LFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCT 65
           L LAL  +AV+       +++  APAPAVDCSSLILNMADCLSFVSN S   KPEGSCCT
Sbjct: 8   LSLALLLVAVWGFVHGHSASSRGAPAPAVDCSSLILNMADCLSFVSNGSKAEKPEGSCCT 67

Query: 66  GLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSP 125
           GLKTVLKADA CLC+AFK+SAQLGVVLN+TKA+SLPAACKVSAP+A+NC LS SPAG+P
Sbjct: 68  GLKTVLKADAACLCEAFKSSAQLGVVLNITKAMSLPAACKVSAPSATNCGLSVSPAGAP 126

The following BLAST results are available for this feature:

BLAST of Carg24568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963887.1	9.1e-75	100.00	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata]	[more]
XP_022967631.1	2.5e-72	95.51	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita maxima]	[more]
XP_023553599.1	4.7e-71	96.07	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp...	[more]
XP_008455223.1	1.6e-55	79.66	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis m...	[more]
XP_022141909.1	2.1e-47	71.58	non-specific lipid-transfer protein-like protein At5g64080 [Momordica charantia]	[more]

BLAST of Carg24568 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64080.1	1.0e-32	60.63	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G13820.1	2.9e-27	60.82	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT4G08670.1	6.8e-16	43.43	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G36150.1	8.9e-16	46.59	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G09370.1	1.9e-13	41.03	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of Carg24568 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI9\|NLTL5_ARATH	1.9e-31	60.63	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]
sp\|Q9ZQI8\|NLTL2_ARATH	5.3e-26	60.82	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
sp\|Q9LZH5\|LTPG2_ARATH	1.2e-09	36.36	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q6ASY2\|NLTL1_ORYSJ	1.6e-06	39.25	Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|O64864\|YLS3_ARATH	1.6e-06	29.37	Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1	[more]

BLAST of Carg24568 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C000\|A0A1S3C000_CUCME	1.1e-55	79.66	non-specific lipid-transfer protein-like protein At5g64080 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0K5X6\|A0A0A0K5X6_CUCSA	5.3e-39	83.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061200 PE=3 SV=1	[more]
tr\|A0A2I4GE41\|A0A2I4GE41_9ROSI	1.5e-38	54.70	non-specific lipid-transfer protein-like protein At5g64080 OS=Juglans regia OX=5...	[more]
tr\|W9RLU9\|W9RLU9_9ROSA	1.7e-37	56.11	Non-specific lipid-transfer protein-like protein OS=Morus notabilis OX=981085 GN...	[more]
tr\|A0A2P6PEB6\|A0A2P6PEB6_ROSCH	3.8e-37	73.95	Putative plant lipid transfer protein/Par allergen OS=Rosa chinensis OX=74649 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24568-RA	Carg24568-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 58..72 score: 31.08 coord: 35..51 score: 22.53 coord: 91..108 score: 37.26
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 36..114 e-value: 2.5E-8 score: 43.7
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 22..114 e-value: 7.6E-15 score: 54.7
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 34..120 e-value: 2.3E-15 score: 58.2
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 1..171
None	No IPR available	PANTHER	PTHR33044:SF27	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 1..171
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 43..106 e-value: 2.79798E-13 score: 60.5183
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 33..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24568	Cla006403	Watermelon (97103) v1	carwmB0644
Carg24568	Csa7G061200	Cucumber (Chinese Long) v2	carcuB0666
Carg24568	MELO3C018657	Melon (DHL92) v3.5.1	carmeB0644
Carg24568	ClCG09G015260	Watermelon (Charleston Gray)	carwcgB0628
Carg24568	CSPI07G05410	Wild cucumber (PI 183967)	carcpiB0675
Carg24568	Cucsa.217810	Cucumber (Gy14) v1	carcgyB0720
Carg24568	CmaCh19G002650	Cucurbita maxima (Rimu)	carcmaB0916
Carg24568	CmaCh11G016400	Cucurbita maxima (Rimu)	carcmaB0915
Carg24568	CmoCh19G002860	Cucurbita moschata (Rifu)	carcmoB0890
Carg24568	Lsi03G007750	Bottle gourd (USVL1VR-Ls)	carlsiB590
Carg24568	Cp4.1LG15g02290	Cucurbita pepo (Zucchini)	carcpeB0919
Carg24568	Cp4.1LG04g07000	Cucurbita pepo (Zucchini)	carcpeB0920
Carg24568	CsGy7G005010	Cucumber (Gy14) v2	carcgybB0643
Carg24568	MELO3C018657.2	Melon (DHL92) v3.6.1	carmedB0654
Carg24568	CsaV3_7G006350	Cucumber (Chinese Long) v3	carcucB0677
Carg24568	Cla97C09G177280	Watermelon (97103) v2	carwmbB0674
Carg24568	Bhi05G000682	Wax gourd	carwgoB0761

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24568	Carg23982	Silver-seed gourd	carcarB566

The following block(s) are covering this gene:

None