CmoCh19G000060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G000060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Exosome complex component RRP4
Location	Cmo_Chr19 : 45313 .. 50211 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTAGTAAAGGACAACCACCTTCCTGAATAACGCCGCCACTACAACGACAACCACCTTCAGTTTCGTGTTTTGTTCTTATTTATTTTTCTCCTTCCTTTGTTTGTTTGGTTTGTGGATTTTATCTCATTTGCTTATTAATTGGTGATATTGTGAATTGTGAATGCCATGTAATTCTATGCGGATTAAATTGTTTTTGTCACCGTTTTGTGTTTTAATACAATGGTACGATATTCTTACTCTCAACCGTATTCAACAATTCTCCCCTCGAACAAAATATATCATAAAGCTTTGGTTTATGTAGCTCTCAAATAGCGTCCCTTTAATTGAGGCTCGACTCCTTCTTTTGGAGCCTCGAACAAAGTACACAATTTGTTCGATATATGAGTCGCCTAAAGCCTCCCTTTAATCGATGTTCTAATCCTTTCTCTATGGCCCTCGAATAAAGTAAACCCTTTTGTTTGACACGAGTCACCTCCCACCTCTCCTGAGGTCTATGTAACAAAGTACACTGTTTGTTCGACACATGAGTCGCCTCCCACCTCCCTTGAGATCTATGTAGTTCTCAAATAGCTTTTTCTTAATCGAGACTCGACTCCTTTCTCTGGAGTCCTCTAGCAAAGTATACCGTTGATAATTCTATTGACATGACTAAATGATTCTATCGACGTATACTTCGGGCCCATACGTCTTCCATAGGAAGATTCAAAACAGGCCGAAGTGTCCAACTAACAGGTGGTCGGCTGTGGCCCAGTATTCTTTCTTTTTCTCTAGACTAGACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGTCCAGTCCCATCCTTTTTTCTCTCCCCATCCCTCTCCGTTTTATTTGACGGAACCCTAGATTTTCACCGCTGCCGTTCAGGTACGTTCAACGTCGCCCTACCACGTCGTCCACTTCTTTCCTTTGCCTTCTCTTCGTTGAAACCATTGATGCTGTTGCCCTCTGCATTTTAAACTTCGCCGTTTGCTTATCGCCTCGTCCCGGTTCCACTGCAATCGTTGCATAGGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACCTTTTCTTGTCACTTTTTTTTTACATGCATGATCGTACGCGTGTTGGAAGTGAACCGAACATTATTTTCTAAAATCCAAAACCTTGAATGGAAGCTCTAAATTAAAAGTTTATAATACCGTATGTCTTTGCAAATATTTTGTTATATAACCTAGAAATTTTCTTAATGCAGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGTATATAAATACTCACTATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTTGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTTGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTATTATATCTTTTCTGATGTAATTGTCTGTTCTGGATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAGTGAAACAGACAAGAAAAACTTATTTGGAGTCATGGTAATGATGCTGTAAATAGGAAAATGTTTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGTAGAATTCCTACCAGACGATGAATTAGCTGTGCCTTCTGATGAACTTTATGGATAATTTTACTGCCAAATTGCTGCAATTGATCTTTTTCTTAAAGAGTGGTTGCATTTGTTCGAACGTTGGGATAATTGTGTGGAACTTTGATGCATTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGTAAGTTCTTTTTAGCTCGTACTTTCACCTATCACCGTCAGAAAGAATATTGCCACTAAGTTTCTCATGTGACATACATACAGGGGGTTTTCTCCTATATTTTGACATTTTTGAAGAATTAAACTTTTTGCATTTGTGGGGGGAGACAACTCTTAGCAAAATGTAGTAGGGTTAAACAATTATCTTGTGAGAACAGCTGAGATGCGTCCAAGCTGGCTTAGACACGTACAAATATAAAAGAATATTTATATCCTACCTTGGACGTTATCATGGGTACCATGGAGATAGAACCAAAACTTTAAGTTTTGCCGTCATGGCCATTAGGCCGAAACATGATGGTTATGAACTTTTGTTAGTTAATCGCATGCCCTTTGCATAGGCTGCGGCACATTAGATAGATAGATGCACCTTTGGCACCTTGCCGGTTCTAGCCCAGTGTCTTAGCTCAAGTGCCATTTTCTTTTCTGCCTTTGCTCCTTACTGAGGTCCTTAAATTTTCTTGACATTCTAGTGTTGCTGTAGGTGTCTAACTCAAGCGTCTATTTGTGTCTCTTTCCCTTAAGTGCCATTTCTGAAGTTTTATCTTCCATTTTTCTATCCGTTTACTTTATCAGCAAGTGATGCAACATATCCATTGTTGCTTCTTTTTCCCACCTGTCACCTCTCTCGACTCAAGCCATGCCTTGTGCCTTGCACAAAGGCTTGAAGAGATGTACTTTGGCGCTTCAGTTTACCTTGCACTATAATAAATAAACACCGCTCTTATCAGTAGTAATTATTCATGCATATTTTCCATTTAAGAAAAAATAACTTCACCAAATTTTTTCTCAGGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGGTAAAAAGAGTCGCTCCTTTTTAAGCTTCTGGATTTTGATGTAAAAACAAAGAATTTAGAATCAAATTTCCGTACGTCTCCTGCATCCTCACTGGTGTCTTAGGAGAGATTCCATAGAAATATTCTTGATAGCATGTGAATACTGATTTATAGACGAATATCATGGGGCAAATTCTAGTGATTAAAACGAATTCTGGAGATGATTATAAAGTTGTTGCACATGAATAAGGGAGAAAAACCAGGAAGGGATTCATTAAGGTGAAAAGACTCATGGGTGGAAATATTTAGTGATTATAAAGAGGAGCTAGCAGATGGGTGGGAGGCAAAAATGTAAAAGATAGTATAGAGAAGTGATTGTGGAGAACACAAAAAAATTGATTCACTGCTAAGGCGTGAAGGACTATAACACAATAGAACAACACGTCTAATTGTTACATTTTTCCTCTTGCTCGTATGATATGTTCAAGATCTTGGAGGTTACCTTACATTTGAATATGGTATCTTTGATCCAATGGTTATTTTGCTCCGAACAACTTTTCTGGCATCATCTCATCTCATTTCTTTACAATTTGTAAACAAGAGTTGTGCACTGTTATCCAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATAGAGCCTTCCCTAAGGCCTATAGAGTCCTTGAACAGCCTCCCCTTAATCGAGGCTCGACTACACTTCTCTAGAGCCCTCAAATAAAGTACACA

mRNA sequence

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATAGAGCCTTCCCTAAGGCCTATAGAGTCCTTGAACAGCCTCCCCTTAATCGAGGCTCGACTACACTTCTCTAGAGCCCTCAAATAAAGTACACA

Coding sequence (CDS)

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA

Homology

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BLAST of CmoCh19G000060 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.1e-122
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

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BLAST of CmoCh19G000060 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.1e-45
Identity = 106/213 (49.77%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWI---GEHVD 374
           +K HFH L   G  +I G NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

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BLAST of CmoCh19G000060 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-44
Identity = 106/283 (37.46%), Postives = 166/283 (58.66%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  RS KYGKL  G
Sbjct: 144 LSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNG 203

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
             L V P LV R K H + L   G+D+I   NG++W+ +H    E+      + + E++ 
Sbjct: 204 VFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSSVSITRLEEEA 263

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMT 435
           S  E  + N+  E       TR NI R +  I+ L++    +T
Sbjct: 264 S--ESIYSNENDE---IDGYTRLNISRVSICIKGLASRSLPLT 294

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BLAST of CmoCh19G000060 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-44
Identity = 104/214 (48.60%), Postives = 136/214 (63.55%), Query Frame = 1


Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTED 378
           +K HFH L   G  +I G NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

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BLAST of CmoCh19G000060 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-43
Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 1


Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL  A + L     +      V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWI 369
           +K HFH L   G  +I G NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

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BLAST of CmoCh19G000060 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 2.3e-144
Identity = 260/327 (79.51%), Postives = 299/327 (91.44%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NY+DGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR+ INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           +LT+ PYLVKRRKQHFHHLEQ+GIDLI GCNGFIW+GEHV+ T+D M+E+QVNK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 393 KFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K +    + + QE+   PLETRQ++CRTANA+RVLS LGFI+T+EVI+ETV+LS SLN++
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

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BLAST of CmoCh19G000060 vs. TrEMBL
Match: M5W486_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 1.6e-140
Identity = 258/327 (78.90%), Postives = 289/327 (88.38%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MRELQ+SLNQTQK+RLQRALE LES+SSKANS+ASV VAD+IP+NY+DG+LKGHGT + N
Sbjct: 1   MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CG+VERVNKL+YVRALRARYKPEVGDIIVGRV EVAPKRWR+ INYS DAVLM
Sbjct: 61  GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL RGQ
Sbjct: 121 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LLTV PYLVKRRKQHFHHLE YGIDLI GCNGFIW+GEHV  T+DM++ DQVNKSEQ  +
Sbjct: 181 LLTVPPYLVKRRKQHFHHLENYGIDLIIGCNGFIWVGEHVQVTDDMVV-DQVNKSEQDDA 240

Query: 393 K-FEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K  E +   + Q + YT  ETR+NICR ANAIRVLS LGF +TVEVI ETV LS S+N+ 
Sbjct: 241 KPDENSISPEDQGKNYTRQETRENICRAANAIRVLSTLGFNITVEVITETVDLSTSINVA 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +HEMLGSEF VL AEKE+ RR+ +KK+
Sbjct: 301 IHEMLGSEFYVLVAEKESVRRSMTKKK 326

[Close]

BLAST of CmoCh19G000060 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 5.6e-138
Identity = 252/331 (76.13%), Postives = 295/331 (89.12%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK+NS+ASV VADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEEND++CAEVRGFQHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           Q+LT+SPYLVKRRKQH H+LE++G+DLI GCNGFIW+GEHV+  + ++IEDQ +K+EQ  
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVE-AKGILIEDQTDKAEQLN 240

Query: 393 SKFEGT--FGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLN 452
           +K   +     + QER YT LETRQNICR ANA+RVL+NLGF +TVEVI ETV+LS SLN
Sbjct: 241 TKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 300

Query: 453 INVHEMLGSEFCVLTAEKEAERRTS-SKKRG 480
           +++HEMLGSEF VL AE EA R++  +KK+G
Sbjct: 301 LDIHEMLGSEFYVLVAEGEATRKSMFTKKKG 330

[Close]

BLAST of CmoCh19G000060 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.1e-136
Identity = 244/328 (74.39%), Postives = 289/328 (88.11%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR L++ L QTQK+RLQRALE LE++S+KANS+ASV +ADTIP+NY+DG LKGHGT +LN
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVR LRARYKPEVGDIIVGRV EVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSS+NLPDGIQRRRTA DELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 121 LSSINLPDGIQRRRTAEDELNMRAIFEENDVICAEVRGFQHDGLHLQARSQKYGKLQRGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LL++  YLVKRRKQH+H+L++YGIDLI GCNGF+W+GEHV+ T+D M+ DQ +K + + S
Sbjct: 181 LLSIPSYLVKRRKQHWHYLDEYGIDLILGCNGFVWVGEHVE-TKDEMLVDQADKPDSQTS 240

Query: 393 KF-EGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K  + +   + QE+ YTPLETRQNICR ANAIRVLS LGF++T+EV+ME V+L  S N++
Sbjct: 241 KTNDHSTSLEGQEQTYTPLETRQNICRIANAIRVLSMLGFVVTIEVVMEVVNLGVSQNMD 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKRG 480
            HEMLGSEFCVL AE+EAERR+  K +G
Sbjct: 301 THEMLGSEFCVLVAEREAERRSQKKNKG 327

[Close]

BLAST of CmoCh19G000060 vs. TrEMBL
Match: A0A151TUE4_CAJCA (Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 1.9e-133
Identity = 238/328 (72.56%), Postives = 287/328 (87.50%), Query Frame = 1


Query: 152 DMRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDL 211
           ++R +Q+ L+QTQK+RLQ+ALE L+S+S K N DASV+VAD+I +N++DGVLKGHGT DL
Sbjct: 4   EVRGIQLPLSQTQKVRLQKALEQLQSLSLKVNFDASVVVADSISVNHEDGVLKGHGTADL 63

Query: 212 NGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVL 271
           NGEVVAT+CGVVERVNKL+YVRALR+RYKPEVGDI++GRV EVA KRWRL INYSQDAVL
Sbjct: 64  NGEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYSQDAVL 123

Query: 272 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 331
           MLSSMN+PDG+QRRRTAVDELNMR IFEENDV+CAEVRGFQHDGLHLQARS+KYGKL RG
Sbjct: 124 MLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLTRG 183

Query: 332 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSE-QK 391
           QLL VSPYLVKR+KQHFHHLE++GIDLI GCNGFIW+GEH++  +D M+EDQVN+S+ Q 
Sbjct: 184 QLLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDD-MVEDQVNQSDPQV 243

Query: 392 GSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNI 451
               + +   + QE+ YT LETR+ ICR ANAIRVLS LGF +T+E+I   + LS SLN+
Sbjct: 244 LLPSKNSVSLEEQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSLNL 303

Query: 452 NVHEMLGSEFCVLTAEKEAERRTSSKKR 479
           ++H+MLGSEFCVL AEKEAERR+S+KK+
Sbjct: 304 DIHDMLGSEFCVLVAEKEAERRSSNKKK 330

[Close]

BLAST of CmoCh19G000060 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 439.1 bits (1128), Expect = 3.5e-123
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of CmoCh19G000060 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 578.9 bits (1491), Expect = 7.9e-162
Identity = 295/328 (89.94%), Postives = 310/328 (94.51%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           M+ LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDP-TEDMMIEDQVNKSEQKG 392
           LLTVSPYL+KRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP   D MIEDQV+K EQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           SKFEGTFGNQVQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+
Sbjct: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKRG 480
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 327

[Close]

BLAST of CmoCh19G000060 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 567.0 bits (1460), Expect = 3.1e-158
Identity = 292/336 (86.90%), Postives = 308/336 (91.67%), Query Frame = 1


Query: 144 VVPTAVAPDMRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVL 203
           VV    + DMR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVL
Sbjct: 6   VVYPQCSSDMRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVL 65

Query: 204 KGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNI 263
           KGHGTLDLNGEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+I
Sbjct: 66  KGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDI 125

Query: 264 NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQ 323
           NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQ
Sbjct: 126 NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQ 185

Query: 324 KYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQ 383
           KYGKLERGQLL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED 
Sbjct: 186 KYGKLERGQLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDH 245

Query: 384 VNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVS 443
           V+K EQK  KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+
Sbjct: 246 VDKPEQKALKFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVN 305

Query: 444 LSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 480
           LS SLNI+VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 306 LSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of CmoCh19G000060 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 564.3 bits (1453), Expect = 2.0e-157
Identity = 289/327 (88.38%), Postives = 304/327 (92.97%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED V+K EQK  
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240

Query: 393 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 452
           KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+V
Sbjct: 241 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 453 HEMLGSEFCVLTAEKEAERRTSSKKRG 480
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of CmoCh19G000060 vs. NCBI nr
Match: gi|659128828|ref|XP_008464390.1| (PREDICTED: exosome complex component RRP4-like [Cucumis melo])

HSP 1 Score: 563.5 bits (1451), Expect = 3.5e-157
Identity = 284/327 (86.85%), Postives = 302/327 (92.35%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR LQI LN TQ+ RL+ A + LES+SSKAN DASV V DT+P +Y+DGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVV TICGVVERVNKLIYVR+LRARYKPE+GDI+VGRVTEVAPKRWRL+I+YSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIG+HVD T+D MIEDQVNK EQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 393 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 452
           KFEG FGNQ+ ERV+TPLETRQNICRTANAIRVLS LGFI+TVEVIMETVSLS SLNINV
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

Query: 453 HEMLGSEFCVLTAEKEAERRTSSKKRG 480
           HEMLGSEF VL AEKE ERR+  KKRG
Sbjct: 301 HEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]

BLAST of CmoCh19G000060 vs. NCBI nr
Match: gi|703076477|ref|XP_010090344.1| (hypothetical protein L484_025009 [Morus notabilis])

HSP 1 Score: 520.4 bits (1339), Expect = 3.4e-144
Identity = 260/327 (79.51%), Postives = 299/327 (91.44%), Query Frame = 1


Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NY+DGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR+ INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           +LT+ PYLVKRRKQHFHHLEQ+GIDLI GCNGFIW+GEHV+ T+D M+E+QVNK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 393 KFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K +    + + QE+   PLETRQ++CRTANA+RVLS LGFI+T+EVI+ETV+LS SLN++
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

The following BLAST results are available for this feature:

BLAST of CmoCh19G000060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP4_ARATH	6.1e-122	67.58	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1	[more]
EXOS2_MOUSE	6.1e-45	49.77	Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1	[more]
RRP4_SCHPO	1.0e-44	37.46	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
EXOS2_BOVIN	1.4e-44	48.60	Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1	[more]
EXOS2_HUMAN	1.1e-43	50.24	Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2	[more]

BLAST of CmoCh19G000060 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QKH6_9ROSA	2.3e-144	79.51	Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1	[more]
M5W486_PRUPE	1.6e-140	78.90	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1	[more]
F6HQ49_VITVI	5.6e-138	76.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=...	[more]
A0A059AYJ7_EUCGR	3.1e-136	74.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1	[more]
A0A151TUE4_CAJCA	1.9e-133	72.56	Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1	[more]

BLAST of CmoCh19G000060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03360.1	3.5e-123	67.58	ribosomal RNA processing 4	[more]

BLAST of CmoCh19G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730897\|ref\|XP_011659879.1\|	7.9e-162	89.94	PREDICTED: exosome complex component RRP4-like [Cucumis sativus]	[more]
gi\|659082839\|ref\|XP_008442058.1\|	3.1e-158	86.90	PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo]	[more]
gi\|659082845\|ref\|XP_008442061.1\|	2.0e-157	88.38	PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo]	[more]
gi\|659128828\|ref\|XP_008464390.1\|	3.5e-157	86.85	PREDICTED: exosome complex component RRP4-like [Cucumis melo]	[more]
gi\|703076477\|ref\|XP_010090344.1\|	3.4e-144	79.51	hypothetical protein L484_025009 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom
IPR026699	Exosome_RNA_bind1/RRP40/RRP4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G000060.1	CmoCh19G000060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 331..371 score: 4.1
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 331..474 score: 1.26
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 237..328 score: 4.49
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 242..321 score: 5.
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 162..477 score: 5.0E
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 162..477 score: 5.0E
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 196..234 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G000060	Cucsa.184330	Cucumber (Gy14) v1	cgycmoB0530
CmoCh19G000060	CmaCh19G000060	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G000060	CmaCh02G018140	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G000060	Cla006070	Watermelon (97103) v1	cmowmB484
CmoCh19G000060	Csa6G409360	Cucumber (Chinese Long) v2	cmocuB517
CmoCh19G000060	MELO3C014419	Melon (DHL92) v3.5.1	cmomeB466
CmoCh19G000060	Lsi05G009110	Bottle gourd (USVL1VR-Ls)	cmolsiB479
CmoCh19G000060	Cp4.1LG15g00040	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G000060	Cp4.1LG05g01530	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G000060	CsaV3_6G036940	Cucumber (Chinese Long) v3	cmocucB0621
CmoCh19G000060	Cla97C07G128350	Watermelon (97103) v2	cmowmbB526
CmoCh19G000060	Bhi05G000261	Wax gourd	cmowgoB0651
CmoCh19G000060	CsGy6G021160	Cucumber (Gy14) v2	cgybcmoB766
CmoCh19G000060	Carg16813	Silver-seed gourd	carcmoB1021

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G000060	CmoCh02G018590	Cucurbita moschata (Rifu)	cmocmoB387

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G000060	Cucumber (Chinese Long) v2	cmocuB511
CmoCh19G000060	Cucumber (Chinese Long) v3	cmocucB0615