CmaCh19G000060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G000060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionExosome complex component RRP4
LocationCma_Chr19 : 43862 .. 46262 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTAGTAAAGGACAACCACCTTCCTGAATAACGCCACTACTACAACGACAACCACCTTCAGTTTCGTGTTTTGTTCTTATTTATTTTTCTCCTTCCTTTGTTTGCTTGGTTTGTGGATTTTATCTCATTTCCTTATTAATTGTGGTTATTGTGAGTTGTGAATGCCATATACGGTTGTAATTCTATGCGGATTAAATTATTTTGTTATCATTTTGTGTATTAATATTAAAGAACTCAAAGGTATAAATATATGGTAGAAAAAAAAAAAAATCAAACAACCTCGTCGAACAAAGTACACCGCCTCCCTTGAGATCTAAGTAGCCCTCAAATAGTCTCCCTACACTATATACTCAAACAACCTCCCCTTCATCGAGAATTGAATCGCCTCCCCGAGGTCTATCTAGCCCTCAAACAGCCTCAAGTACCCCACAGACTCAAACAACCTCCCTTTACTCGAGACTTGAATTTCCTCCCCTGAGGTCTATGTAGCCCTCGAACCGCCTTCCCTTAATCGATGCTCAAATCTTTTCTCTAGAACTTTCGAACAAAGTACACCTTCTGTTTGACACATGGGATCGATGCTCAAATCTTTTCTCTAGAACTTTCGAACAAAATACACCTTTTGTTTGACACATGGGTCGCTTCCCGCCTCTTTTAAAATCTATGTAACCCTCAAATAGTCTACACTTTGAGCGTAAGCTCCCATGACTTTACATTGTTTCAAAAAAAAAAAAAGTTTGGGATCATCTTCTAAATTAACCCACCTACGTCTAACCATCCTCAACAGGCCAAACTGTCCAACTAAACTGTGGTCGGCTGTGGCCCAGTATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACTTTTTCTTGTCACTTTTTTTTACATGCATGATCGCACGTGGGGTTGGAAGTGAACCAAACATTATTTTTAAAAAACCAAAACCTTGAATTGAAGCTCTAAATTAAAAGTTTATAATACCGTATGTCTTTGCAAGTATTTTGTTATATAACCTAGAAATTTTCTTAATGCAGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGTATATAAATAATCACCATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTCGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTCGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTGTTATATCTTTTCTGATGTAATTGTCTGTTCTGAATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAATGAAACAGACAAGAAAAACTTATTTGGAGTCATGGTTATGATGCTGTAAATAGGAAAATGTGTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

mRNA sequence

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTATATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

Coding sequence (CDS)

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTATATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

Protein sequence

MGKNTKSSKRSSVCERFLKALGMCPSPNRQEEPLAPEMDKKQRPNINGAPEMEKKQKLEPNDAFSDYINRAKRRLGSISSKRHDPSSKGKENLKEDRRFTDYIIRARNRLRATSSTVGRSIFLLFLYPRLRLPLLLRSRRHVRRRRSTSSTSFLILLFVATIDAVGPPHFELCRLLVALSRFHCRRCIDGTWFARDMRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQLL
Homology
[Close]
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-49
Identity = 91/131 (69.47%), Postives = 118/131 (90.08%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR+LQ+ L+QTQ++R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GE++AT+CGVVER++KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 317 LSSMNLPDGIQ 328
           LSSMN+PDGIQ
Sbjct: 123 LSSMNMPDGIQ 133

[Close]
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.5e-21
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1 

Query: 210 IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVER 269
           +RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VER
Sbjct: 5   MRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVER 64

Query: 270 INKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           +NKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 65  VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.4e-21
Identity = 51/131 (38.93%), Postives = 85/131 (64.89%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           G + A++ G V+R+NKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 317 LSSMNLPDGIQ 328
           LSS+NLP GIQ
Sbjct: 144 LSSINLPGGIQ 151

[Close]
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-20
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1 

Query: 210 IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVER 269
           +RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VER
Sbjct: 5   MRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVER 64

Query: 270 INKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           +NKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 65  VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-20
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 232 VIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERINKLIYVRALRARYKPEVGDII 291
           V+  DTI    D G ++GHGT     +++A++ G VER+NKLI V+AL+ RY  EVGDI+
Sbjct: 27  VVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIV 86

Query: 292 VGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 87  VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]
BLAST of CmaCh19G000060 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.1e-55
Identity = 109/131 (83.21%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR  Q+SLNQTQ++RLQRALE LES+SSK+NS+ASV VADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVAT+CGVVER+NKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. TrEMBL
Match: M5W486_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.8e-55
Identity = 109/131 (83.21%), Postives = 124/131 (94.66%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQ+SLNQTQ++RLQRALE LES+SSKANS+ASV VAD+IP+NY+DG+LKGHGT + N
Sbjct: 1   MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVAT+CG+VER+NKL+YVRALRARYKPEVGDIIVGRV EVAPKRWR+ INYS DAVLM
Sbjct: 61  GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 5.3e-55
Identity = 110/133 (82.71%), Postives = 123/133 (92.48%), Query Frame = 1 

Query: 195 RDMRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLD 254
           R MR  Q+SLNQTQ++RLQRALE LES+SSK NS+ASV VAD+IP+NY+DGVLKGHGT +
Sbjct: 3   RGMRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSE 62

Query: 255 LNGEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAV 314
           LNGEVVAT+CGVVER+NKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR+ INYSQDAV
Sbjct: 63  LNGEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAV 122

Query: 315 LMLSSMNLPDGIQ 328
           LMLSSMNLPDGIQ
Sbjct: 123 LMLSSMNLPDGIQ 135

[Close]
BLAST of CmaCh19G000060 vs. TrEMBL
Match: A0A061DIE4_THECC (Ribosomal RNA processing 4 OS=Theobroma cacao GN=TCM_001299 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 109/131 (83.21%), Postives = 120/131 (91.60%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR LQ+ LNQTQRIRLQRALE L S+SSKANSDASV VADTIP+NYDD  LKGHGT +LN
Sbjct: 1   MRGLQLPLNQTQRIRLQRALEKLHSLSSKANSDASVTVADTIPVNYDDAFLKGHGTTELN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GE+VAT+CGVVER+NKL+YVRALRARYKPEVGDI+VGRV EVA KRWRL IN+SQDAVLM
Sbjct: 61  GELVATVCGVVERVNKLVYVRALRARYKPEVGDIVVGRVVEVAQKRWRLEINFSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMN+PDGIQ
Sbjct: 121 LSSMNMPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.8e-53
Identity = 105/131 (80.15%), Postives = 122/131 (93.13%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR L++ L QTQ++RLQRALE LE++S+KANS+ASV +ADTIP+NY+DG LKGHGT +LN
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVAT+CGVVER+NKL+YVR LRARYKPEVGDIIVGRV EVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSS+NLPDGIQ
Sbjct: 121 LSSINLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-50
Identity = 91/131 (69.47%), Postives = 118/131 (90.08%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR+LQ+ L+QTQ++R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GE++AT+CGVVER++KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 317 LSSMNLPDGIQ 328
           LSSMN+PDGIQ
Sbjct: 123 LSSMNMPDGIQ 133

[Close]
BLAST of CmaCh19G000060 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 3.3e-58
Identity = 116/132 (87.88%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 196 DMRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDL 255
           DMR LQ+SLN TQ+IRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDL
Sbjct: 14  DMRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDL 73

Query: 256 NGEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVL 315
           NGEVVA+ICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVL
Sbjct: 74  NGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 133

Query: 316 MLSSMNLPDGIQ 328
           MLSSMNLPDGIQ
Sbjct: 134 MLSSMNLPDGIQ 145

[Close]
BLAST of CmaCh19G000060 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 2.1e-57
Identity = 115/131 (87.79%), Postives = 126/131 (96.18%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR LQ+SLN TQ+IRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVA+ICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 113/131 (86.26%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           M+ LQ+SLN TQ+IRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVA+ICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. NCBI nr
Match: gi|225436884|ref|XP_002271258.1| (PREDICTED: exosome complex component RRP4 [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 109/131 (83.21%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR  Q+SLNQTQ++RLQRALE LES+SSK+NS+ASV VADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVAT+CGVVER+NKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]
BLAST of CmaCh19G000060 vs. NCBI nr
Match: gi|296086683|emb|CBI32318.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 109/131 (83.21%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR  Q+SLNQTQ++RLQRALE LES+SSK+NS+ASV VADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVAT+CGVVER+NKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

The following BLAST results are available for this feature:
BLAST of CmaCh19G000060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP4_ARATH2.8e-4969.47Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1[more]
EXOS2_MOUSE5.5e-2146.55Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1[more]
RRP4_SCHPO9.4e-2138.93Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
EXOS2_BOVIN1.6e-2046.55Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1[more]
EXOS2_HUMAN3.6e-2053.19Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2[more]
BLAST of CmaCh19G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HQ49_VITVI1.1e-5583.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=... [more]
M5W486_PRUPE1.8e-5583.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1[more]
W9QKH6_9ROSA5.3e-5582.71Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1[more]
A0A061DIE4_THECC3.4e-5483.21Ribosomal RNA processing 4 OS=Theobroma cacao GN=TCM_001299 PE=4 SV=1[more]
A0A059AYJ7_EUCGR3.8e-5380.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1[more]
BLAST of CmaCh19G000060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03360.11.6e-5069.47 ribosomal RNA processing 4[more]
BLAST of CmaCh19G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082839|ref|XP_008442058.1|3.3e-5887.88PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo][more]
gi|659082845|ref|XP_008442061.1|2.1e-5787.79PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo][more]
gi|778730897|ref|XP_011659879.1|1.8e-5686.26PREDICTED: exosome complex component RRP4-like [Cucumis sativus][more]
gi|225436884|ref|XP_002271258.1|1.5e-5583.21PREDICTED: exosome complex component RRP4 [Vitis vinifera][more]
gi|296086683|emb|CBI32318.3|1.5e-5583.21unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009561 megagametogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0000178 exosome (RNase complex)
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000060.1CmaCh19G000060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 281..326
score: 1.37
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 206..327
score: 9.4
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 206..327
score: 9.4
NoneNo IPR availableunknownSSF110324Ribosomal L27 protein-likecoord: 240..278
score: 1.1