Csa6G409360 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G409360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 18807087 .. 18807907 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCAAACACACAACTTTTTCAATCATAAAAGCATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGGAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGATTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGATGATCATAACACCCTCATAATGCTTGCTTGCTTGCTTGCTTTCTTTTGTTTTGAAGTGGTTTTGTAAACGATTAAAATCACCACAAAAGTGATTTTAGTTACTATTAATTCTTGTTTTTCTTTTTGGGTTATGGGTTTTACTTTGTTATCATTGATTATTGGCATTTGAAAGCCATATGGTGTAGTGATACATACATTACTACAAGGTCTGTAATAATTCTGCTTTACTAAGGGGGGATTTAATTGTTTCTCTCATTATTAACTATATATCATTGTATACTATATTTAACATAATGTAATGTGTTCTTTTGTATTT

mRNA sequence

ATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGGAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGATTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGA

Coding sequence (CDS)

ATGGGAAAAAACTCCAAATCCTCCACCCCCAACACCCCTTTTTGTGAGAAGTTGCTCAAAGCATTTGGAATGAGTCATCGTCCTAAAATCAACAAATTAAGTTCATCCATAAGCCACCATGAACACCATCATCATCAACAACAAAGGAACTCTTCTCAGCATATTTATGTTCATCATGAACCTGCAGTAATGGAGAAGACACACAGCTCTAAGAATAATAAATATGCAGGAGGAGATGAAGATTCTGTAAACGCTGCGTTTAGCAATTACATAAATCGAGCTAAACGAAGGCTGGAAAACATGGCGAGCAAGAAACATAGTAATGATTCGAGTAGCAGAGGTAAAGAGAATAATCTTAAAGCTGAAGATCGTCGGTTTTCGGATTATATCGTTCGTGCTCGAAATAAGCTGAGGTCTACTTCTTCAAGTGTGGGATTGGCTAAAACTAAGAGTAGCAGCTCTGTAAAGTGA

Protein sequence

MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHEPAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK*
Homology
[Close]
BLAST of Csa6G409360 vs. TrEMBL
Match: A0A0A0KG94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409360 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.2e-83
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60
           MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
           PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120

Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
           AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156

[Close]
BLAST of Csa6G409360 vs. NCBI nr
Match: gi|700192675|gb|KGN47879.1| (hypothetical protein Csa_6G409360 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.1e-83
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60
           MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120
           PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK
Sbjct: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120

Query: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 157
           AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSVGLAKTKSSSSVK 156

[Close]
BLAST of Csa6G409360 vs. NCBI nr
Match: gi|694332170|ref|XP_009356732.1| (PREDICTED: uncharacterized protein LOC103947545 [Pyrus x bretschneideri])

HSP 1 Score: 58.9 bits (141), Expect = 9.1e-06
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 1 

Query: 29  KINKLSSSISHHEHHHHQQQRNSSQHIYVHHEPAVMEKTHSSKNNKYAGGDEDSVNAAFS 88
           KI        H   H ++++   + H  V  +    +    +   K  GG +  +N  FS
Sbjct: 97  KIEPKKPPTHHGLVHKYKEELAKATHSKVEEDKHEAQAQARNIEGKKQGGLD--INDKFS 156

Query: 89  NYINRAKRRLENMASKKHSNDSSSRGKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAK 148
            YINRAK ++ +M+SKK +            +  +  FSDYI RA+NK RST S++G  K
Sbjct: 157 EYINRAKIKIRSMSSKKMAESDEVDYDGKKRETGNEHFSDYIQRAKNKFRSTPSNLGGRK 216

Query: 149 TKS 152
             S
Sbjct: 217 NAS 217

The following BLAST results are available for this feature:
BLAST of Csa6G409360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG94_CUCSA2.2e-83100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409360 PE=4 SV=1[more]
BLAST of Csa6G409360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192675|gb|KGN47879.1|3.1e-83100.00hypothetical protein Csa_6G409360 [Cucumis sativus][more]
gi|694332170|ref|XP_009356732.1|9.1e-0630.89PREDICTED: uncharacterized protein LOC103947545 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009561 megagametogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088591cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G409360.1Csa6G409360.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088591CU088591transcribed_cluster