Carg16813 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16813
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	exosome complex component RRP4 homolog
Location	Cucurbita_argyrosperma_scaffold_105 : 51443 .. 54856 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCCCGGTTCCACTGCCATCGTTGCATAGGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACCTTTTCTTGTCACTTTTTTTTTACATGCATGATCGCACGCGTGTTGGAAGTGAACCGAACATTATTTTCTAAAATCCAAAACCTTGAATGGAAGCTCTAAATTAAAAGTTTATAATACCGTATGTCTTTGCAAATATTTTGTTATATAACCTAGAAATTTTCTTAATGCAGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGTATATAAATACTCACTATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTTGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTTGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTATTATATCTTTTCTGATGTAATTGTCTGTTCTGGATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAGTGAAACAGACAAGAAAAACTTATTTGGAGTCATGGTAATGATGCTGTAAATAGGAAAATGTTTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGTAGAATTCCTACCAGACGATGAATTAGCTGTGCCTTCTGATGAACTTTATGGATAATTTTACTGCCAAATTGCTGCAATTGATCTTTTTCTTAAAGAGTGGTTGCATTTGTTCGAACGTTGGGATAATTGTGTGGAACTTTGATGCATTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGTAAGTTCTTTTTAGCTCGTACTTTCACCTATCACCGTCAGAAAGAATATTGCCACTAAGTTTCTCATGTGACATACATACAGGGGGTTTTCTCCTATATTTTGACATTTTTGAAGAATTAAACTTTTTGCATTTGTGGGGGGAGACAACTCTTAGCAAAATGTAGTAGGGTTAAACAATTATCTTGTGAGAACAGCTGAGATGCGTCCAAGCTGGCTTAGACACGTACAAATATAAAAGAATATTTATATCCTACCTTGGACGTTATCATGGGTACCATGGAGATAGAACCAAAACTTTAAGTTTTGCCGTCATGGCCATTAGGCCGAAACATGATGGTTATGAACTTTTGTTAGTTAATCGCATGCCCTTTGCATAGGCTGCGGCACATTAGATAGATAGATGCACCTTTGGCACCTTGCCGGTTCTAGCCCAGTGTCTTAGCTCAAGTGCCATTTTCTTTTCTGCCTTTGCTCCTTACTGAGGTCCTTAAATTTTCTTGACATTCTAGTGTTGCTGTAGGTGTCTAACTCAAGCGTCTATTTGTGTCTCTTTCCCTTAAGTGCCATTTCTGAAGTTTTATCTTCCATTTTTCTATCCGTTTACTTTATCAGCAAGTGATGCAACATATCCATTGTTGCTTCTTTTTCCCACCTGTCACCTCTCTCGACTCAAGCCATGCCTTGTGCCTTGCACAAAGGCTTGAAGAGATGTACTTTGGCGCTTCAGTTTACCTTGCACTATAATAAATAAACACCGCTCTTATCAGTAGTAATTATTCATGCATATTTTCCATTTAAGAAAAAATAACTTCACCAAATTTTTTCTCAGGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGGTAAAAAGAGTCGCTCCTTTTTAAGCTTCTGGATTTTGATGTAAAAACAAAGAATTTAGAATCAAATTTCCGTACGTCTCCTGCATCCTCACTGGTGTCTTAGGAGAGATTCCATAGAAATATTCTTGATAGCATGTGAATACTGATTTATAGACGAATATCATGGGGCAAATTCTAGTGATTAAAACGAATTCTGGAGATGATTATAAAGTTGTTGCACATGAATAAGGGAGAAAAACCAGGAAGGGATTCATTAAGGTGAAAAGACTCATGGGTGGAAATATTTAGTGATTATAAAGAGGAGCTAGCAGATGGGTGGGAGGCAAAAATGTAAAAGATAGTATAGAGAAGTGATTGTGGAGAACACAAAAAAATTGATTCACTGCTAAGGCGTGAAGGACTATAACACAATAGAACAACACGTCTAATTGTTACATTTTTCCTCTTGCTCGTATGATATGTTCAAGATCTTGGAGGTTACCTTACATTTGAATATGGTATCTTTGATCCAATGGTTATTTTGCTCCGAACAACTTTTCTGGCATCATCTCATCTCATTTCTTTACAATTTGTAAACAAGAGTTGTGCACTGTTATCCAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATA

mRNA sequence

CGTCCCGGTTCCACTGCCATCGTTGCATAGGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACCTTTTCTTGTCACTTTTTTTATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATA

Coding sequence (CDS)

ATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA

Protein sequence

MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG

Homology

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BLAST of Carg16813 vs. NCBI nr
Match: XP_022963877.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963878.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963879.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 641.0 bits (1652), Expect = 2.3e-180
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg16813 vs. NCBI nr
Match: XP_023554062.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554063.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554064.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 625.2 bits (1611), Expect = 1.3e-175
Identity = 320/327 (97.86%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSL       V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLXXXXXXXV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg16813 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 612.5 bits (1578), Expect = 8.6e-172
Identity = 309/327 (94.50%), Postives = 319/327 (97.55%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSL  SLNI+V
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg16813 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 611.3 bits (1575), Expect = 1.9e-171
Identity = 309/327 (94.50%), Postives = 320/327 (97.86%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg16813 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 610.1 bits (1572), Expect = 4.3e-171
Identity = 308/325 (94.77%), Postives = 319/325 (98.15%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKK 326
           HEMLGSEFCVLTAEKEAERRTSSKK
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of Carg16813 vs. TAIR10
Match: AT1G03360.1 (ribosomal RNA processing 4)

HSP 1 Score: 437.6 bits (1124), Expect = 6.9e-123
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 327
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Carg16813 vs. Swiss-Prot
Match: sp|Q9ZVT7|RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.2e-121
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 327
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Carg16813 vs. Swiss-Prot
Match: sp|Q8VBV3|EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.5e-45
Identity = 106/213 (49.77%), Postives = 137/213 (64.32%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWI---GEHVD 222
           +K HFH L   G  +I G NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]

BLAST of Carg16813 vs. Swiss-Prot
Match: sp|Q2KID0|EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-44
Identity = 104/214 (48.60%), Postives = 136/214 (63.55%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTED 226
           +K HFH L   G  +I G NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]

BLAST of Carg16813 vs. Swiss-Prot
Match: sp|Q09704|RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-44
Identity = 106/283 (37.46%), Postives = 166/283 (58.66%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  RS KYGKL  G
Sbjct: 144 LSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNG 203

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
             L V P LV R K H + L   G+D+I   NG++W+ +H    E+      + + E++ 
Sbjct: 204 VFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSSVSITRLEEEA 263

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMT 283
           S  E  + N+  E       TR NI R +  I+ L++    +T
Sbjct: 264 S--ESIYSNENDE---IDGYTRLNISRVSICIKGLASRSLPLT 294

[Close]

BLAST of Carg16813 vs. Swiss-Prot
Match: sp|Q13868|EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-43
Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     +      V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWI 217
           +K HFH L   G  +I G NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of Carg16813 vs. TrEMBL
Match: tr|A0A1S3B5H2|A0A1S3B5H2_CUCME (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 5.2e-157
Identity = 289/327 (88.38%), Postives = 304/327 (92.97%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED V+K EQK  
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+V
Sbjct: 255 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of Carg16813 vs. TrEMBL
Match: tr|A0A1S3B4T9|A0A1S3B4T9_CUCME (exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 5.2e-157
Identity = 289/327 (88.38%), Postives = 304/327 (92.97%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED V+K EQK  
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+V
Sbjct: 241 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of Carg16813 vs. TrEMBL
Match: tr|A0A1S3CLC6|A0A1S3CLC6_CUCME (exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 8.8e-157
Identity = 284/327 (86.85%), Postives = 302/327 (92.35%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQI LN TQ+ RL+ A + LES+SSKAN DASV V DT+P +Y+DGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVV TICGVVERVNKLIYVR+LRARYKPE+GDI+VGRVTEVAPKRWRL+I+YSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIG+HVD T+D MIEDQVNK EQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG FGNQ+ ERV+TPLETRQNICRTANAIRVLS LGFI+TVEVIMETVSLS SLNINV
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 328
           HEMLGSEF VL AEKE ERR+  KKRG
Sbjct: 301 HEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]

BLAST of Carg16813 vs. TrEMBL
Match: tr|A0A2N9G526|A0A2N9G526_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25658 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.7e-144
Identity = 261/328 (79.57%), Postives = 300/328 (91.46%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRE+Q+SLNQTQKIRL RALE LES+SSK NS+ASV +AD+IP+N++DGVLKGHGTLDLN
Sbjct: 1   MREIQLSLNQTQKIRLNRALEKLESLSSKVNSNASVAIADSIPVNHEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+Y+RALRARYKPEVGDIIVGRV+EVA KRWRL+I+YSQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRALRARYKPEVGDIIVGRVSEVAQKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQ+DGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQYDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHH+EQYG+DLI GCNGFIW+GEHV+  +D M+EDQV+KSEQ   
Sbjct: 181 LLTVPPYLVKRRKQHFHHVEQYGVDLILGCNGFIWVGEHVEAKDD-MVEDQVSKSEQLNI 240

Query: 241 KF-EGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           K  + +   + QER YTP+ETRQNICR ANA+RVLS LGF +T+EVI+ET++LS SLN++
Sbjct: 241 KSNKNSVSLEEQERTYTPIETRQNICRIANAVRVLSILGFNITIEVILETMNLSSSLNLD 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 328
           +HEMLGSEFCVL AE EAERR+ +KK+G
Sbjct: 301 IHEMLGSEFCVLVAEGEAERRSLTKKKG 327

[Close]

BLAST of Carg16813 vs. TrEMBL
Match: tr|A0A2N9GW15|A0A2N9GW15_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 2.9e-144
Identity = 260/328 (79.27%), Postives = 300/328 (91.46%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRE+Q+SLNQTQKIRL RALE LES+SSK NS+ASV +AD+IP+N++DGVLKGHGTLDLN
Sbjct: 1   MREIQLSLNQTQKIRLNRALEKLESLSSKVNSNASVAIADSIPVNHEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+Y+RALRARYKPEVGDIIVGRV+EVA KRWRL+I+YSQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRALRARYKPEVGDIIVGRVSEVAQKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQ+DGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQYDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHH+EQYG+DLI GCNGFIW+GEHV+  +D M+EDQV+K EQ+  
Sbjct: 181 LLTVPPYLVKRRKQHFHHVEQYGVDLILGCNGFIWVGEHVEAKDD-MVEDQVSKPEQQNI 240

Query: 241 KF-EGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           K  + +   + QER YTP+ETRQNICR ANA+RVLS LGF +T+EVI+ET++LS SLN++
Sbjct: 241 KSNKNSVSLEEQERTYTPIETRQNICRIANAVRVLSILGFNITIEVILETMNLSSSLNLD 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 328
           +HEMLGSEFCVL AE EAERR+ +KK+G
Sbjct: 301 IHEMLGSEFCVLVAEGEAERRSLTKKKG 327

The following BLAST results are available for this feature:

BLAST of Carg16813 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963877.1	2.3e-180	100.00	exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_02296...	[more]
XP_023554062.1	1.3e-175	97.86	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02355406...	[more]
XP_023533481.1	8.6e-172	94.50	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348...	[more]
XP_022995373.1	1.9e-171	94.50	exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom...	[more]
XP_022931250.1	4.3e-171	94.77	exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos...	[more]

BLAST of Carg16813 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03360.1	6.9e-123	67.58	ribosomal RNA processing 4	[more]

BLAST of Carg16813 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVT7\|RRP4_ARATH	1.2e-121	67.58	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
sp\|Q8VBV3\|EXOS2_MOUSE	5.5e-45	49.77	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
sp\|Q2KID0\|EXOS2_BOVIN	1.2e-44	48.60	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
sp\|Q09704\|RRP4_SCHPO	2.1e-44	37.46	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
sp\|Q13868\|EXOS2_HUMAN	1.0e-43	50.24	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of Carg16813 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5H2\|A0A1S3B5H2_CUCME	5.2e-157	88.38	exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3B4T9\|A0A1S3B4T9_CUCME	5.2e-157	88.38	exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3CLC6\|A0A1S3CLC6_CUCME	8.8e-157	86.85	exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 P...	[more]
tr\|A0A2N9G526\|A0A2N9G526_FAGSY	1.7e-144	79.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25658 PE=4 SV=1	[more]
tr\|A0A2N9GW15\|A0A2N9GW15_FAGSY	2.9e-144	79.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR036612	KH_dom_type_1_sf
IPR026699	Exosome_RNA_bind1/RRP40/RRP4
IPR004088	KH_dom_type_1
IPR022967	S1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16813-RA	Carg16813-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 e-value: 5.3E-4 score: 29.3
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 27..86 e-value: 6.4E-17 score: 62.8
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 87..177 e-value: 1.9E-20 score: 74.7
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 29..323
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 86..176 e-value: 1.51142E-32 score: 116.495
None	No IPR available	SUPERFAMILY	SSF110324	Ribosomal L27 protein-like	coord: 44..82
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..219 e-value: 2.6E-13 score: 50.0
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 29..323
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..322
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 85..176

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16813	CmaCh19G000060	Cucurbita maxima (Rimu)	carcmaB1049
Carg16813	CmaCh02G018150	Cucurbita maxima (Rimu)	carcmaB1051
Carg16813	CmoCh19G000060	Cucurbita moschata (Rifu)	carcmoB1021
Carg16813	CmoCh02G018600	Cucurbita moschata (Rifu)	carcmoB1023
Carg16813	Cp4.1LG15g00040	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16813	Cp4.1LG05g01530	Cucurbita pepo (Zucchini)	carcpeB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16813	Cucumber (Gy14) v2	carcgybB0750
Carg16813	Wild cucumber (PI 183967)	carcpiB0790
Carg16813	Cucumber (Chinese Long) v2	carcuB0770
Carg16813	Cucumber (Chinese Long) v2	carcuB0772
Carg16813	Cucumber (Chinese Long) v3	carcucB0793
Carg16813	Cucumber (Chinese Long) v3	carcucB0791
Carg16813	Melon (DHL92) v3.5.1	carmeB0745
Carg16813	Watermelon (Charleston Gray)	carwcgB0730
Carg16813	Watermelon (97103) v2	carwmbB0788