CmaCh02G018150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G018150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionExosome complex component RRP4
LocationCma_Chr02 : 10072154 .. 10076474 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAGTACGTAGGAAGCAGAGTTGAGCTAAGTGGAAAACAAATTTAAAAATGATTGTTGATTTTGTAACTATGTTTTGAAAAAATAAGGTCATATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTACAAGCATTATTTATTTTCTTCTCCCTCCTTTTTTTTCCCTATGAACCCTAGATTTACGCTGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCTATCGTCGCCGTCGCACCACTTTGTGAAGACCCACCGTGTTTCAACCCCCTCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCGTACGTTCAACTTCGCTGATGCACCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCGTTTTGTATTTTTTTCGTTTGCAGATCACCTCGTTCCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGCTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGGTTTGCTCGTCCACCTCTGTTCCTTTTATTCATTTTTTCCTCTATCTTCAGCAACCGGCAGCAACCTGTTGCCTCATTTGCACATTGTTCCATGTCCGTAATTGATTGTTTTTTTTGCACAGTCGTGGCTCGGAGAAATGATTATGTTGCGACGTTGCTAGTCCTTATTTGTGTAATTTTTTTCACCACGTACCAAATTATTATCGGATATCTGTACAAATATTTTGTTCTAGTACGTCGATTTTGGTGATCAGCATCCTGCAGCACCCCTATGTTCTAATTTAGTAATTTTCTAAATGCAGATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCAAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATCTTTATACAATAGATATTTGGTTTGTGTACTTGCCTGGGGGTTATTGCATTGAGGTTTAATTGAGATGTGTTTACAGGGGACATGGAACCCTTGACTTGTATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGTTGTCCATGAATCTTTATAATTTGATTTTTCTTGATGATAGTTTAATGTTTCCCTTCTTTTGGTTTCTTGTTAGGGTGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTAAAACCAAATGCTTTTTATTAGGTTTAAGTTGGGGAGTAAAACTTATTCCTGAGTCATGGTTATGCTGTTCAAATCTGAAAAACGTGTTACAATGCAACCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCAATCTCTACTATCTCATTCAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGGTACTGGAGAAATCCCTTTTTTTTATGTACATAATGGTGTCTCGCACCAGATGATGAATAACTGCTGAATTTTGTAGATAACTCTACTGCAAACTTGCTGCAGTTTATCTTTTATAGAGTGATTGCATTTGTGGATTATTGTTTGAACTTTGGTATATTCGTTTTTTTTTTTCTAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGAGGACCATTTTTGAAGAAAATGATGTTATTTGCGTAAGTTTTTAGTTCCATTTTCACCTAGCACCATCAGAAAGAATACGTGCTACCAATTTTCTCATGTGACATACGTCTAAGTGGGTTTGTTCCATGTTTTGAATATTTTGAAGCATTAAAATTTTATTAGTTTTTTTGGTTAGATAATTGTTTGATCCTAGGATATTTGATTGTTAAGAAACTTGTAGGATTTTAATATCATAGGAGAGTACCGTGGTACCATGGAGTTCGAACCATAACTTTAAGTTATACCGTCTTGACCTTTTGGCCAAAACACGATGGCCTTGATCTTTTGTTATTTAACTCACAACACCTTTGTAAAAGGTATGGAACATAGGCTCCAGCACATTAGATTGATAGATGCGTCTTTGGCACCTTGCTTGGTTTCGGGCCAGGTGTCTTAATTCAAGGGCCCTTTTGTGGCTTGTTGCTCTTCACTAAGGTCCCATTATTATTTTTTTGACATTCTAATGTTGTAGATTCTTAACTCAAGAGCCTTTTTGTGCCTCTTGCCCATAAGTGTCATTCTTTGATTTTCTCTACTTTTCTCGCCTTATACTTTATCAGCAAGTGATGCAATATACCTGTTATTTCTTTTTTCTCTTCTCTCTCGGACTCTAGGCATGCCTTGTGCCTGGCACAAAGGCTTCAAAGAGACGTACTTTGGCACTGTAGTTTAACCTTGCACTATAAATAAACACCACTCTCATCATTAATTGTTTCACATGCTTCATTTTCCAGTCAAGAAAAAAAAAAATAATAATAACATCACCATAACTTTTCTCAGGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGGTGAAATGAGTCCTTTTTTTAAGTTTCTGGATGTTGATGTAATAACAAAATAAGCTTTTGAAACAAATCTCCATACACATCTTCCCTTGTTTCTTAGGAGAGATTCTGTAAAAAGAGTCTTGAAAGAATGTGAGTACTAATTTATAGAAGAACCTCCTGGGTAAATTCTAGTGGTTAGAACTAATTGTAAAGATGGGTTTGTTTGTTGCCCAGGAATAAGGGAAAAAGGGCTGTGATTAATGTGAAAAGAGTGACGGGTAGAAACCATTGAGTGAATGTAAGAATGGGAGCTAGCAGATGTGCCGAGGTAAGACAAAATGTAAGAGATGGTAAAAGAAAAGTTATTGTGCGAATGCGAACAAACCGATCCATCGCTAAGGTGTGAATAGCTATAACGCAATATCTCAACACAGAAATTATGTTTACTTCTGATTGTTATATTTTCCTTTTATGCTTAGCGTGATAAGTTCACAATTTTGGGAGGGTTATATTTGAATAAGATTTCTTCGTTGCAATGGTTATTATGTTCCTGACAACTTTTCTTTTCGACCGTTTTAAATATTGTTTTTTTCTTGATTAATAAGATTACTGCATTTGTATCCAGCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGATTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTTCAAAATTGTGTAATTCACTCTTGATGGAAATTTTGCTACGAACAATTTGATTTTCAGAGGAACTCACTATGATATCTTAGTTTGTGGAATTTTATAATACCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAACTTCACTTAACTTTATAAAATGTAGTATTTTCGCG

mRNA sequence

AAAAGAGTACGTAGGAAGCAGAGTTGAGCTAAGTGGAAAACAAATTTAAAAATGATTGTTGATTTTGTAACTATGTTTTGAAAAAATAAGGTCATATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTACAAGCATTATTTATTTTCTTCTCCCTCCTTTTTTTTCCCTATGAACCCTAGATTTACGCTGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCTATCGTCGCCGTCGCACCACTTTGTGAAGACCCACCGTGTTTCAACCCCCTCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCACCTCGTTCCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGCTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGTCGTGGCTCGGAGAAATGATTATGTTGCGACGTTGCTAGTCCTTATTTGTATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCAAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGTATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGAGGACCATTTTTGAAGAAAATGATGTTATTTGCCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGATTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTTCAAAATTGTGTAATTCACTCTTGATGGAAATTTTGCTACGAACAATTTGATTTTCAGAGGAACTCACTATGATATCTTAGTTTGTGGAATTTTATAATACCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAACTTCACTTAACTTTATAAAATGTAGTATTTTCGCG

Coding sequence (CDS)

ATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCAAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGTATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGAGGACCATTTTTGAAGAAAATGATGTTATTTGCCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGATTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGA

Protein sequence

MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLYGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Homology
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BLAST of CmaCh02G018150 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 9.7e-105
Identity = 197/327 (60.24%), Postives = 249/327 (76.15%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC-----------------------LERG 180
           LSSMN+PDGIQRRRT+VDELNMR IF E+DV+C                       LE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+      V DP+   +QK 
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE------VRDPMAIDDQKD 242

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
            +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+LS S NID
Sbjct: 243 EEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of CmaCh02G018150 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-37
Identity = 95/213 (44.60%), Postives = 125/213 (58.69%), Query Frame = 1 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLYGEVVATICGVVE 72
           ++RL +A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 200
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]
BLAST of CmaCh02G018150 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-36
Identity = 93/214 (43.46%), Postives = 124/214 (57.94%), Query Frame = 1 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLYGEVVATICGVVE 72
           ++RL  A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTED 204
           +K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]
BLAST of CmaCh02G018150 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-36
Identity = 99/257 (38.52%), Postives = 140/257 (54.47%), Query Frame = 1 

Query: 51  LKGHGTLDLYGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLD 110
           ++GHGT    G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------- 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MR+ F+E D++                  
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 ------LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVE 230
                 L  G  L V P LV R K H + L   G+D+IL  NG++W+ +H    E+    
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSS 250

Query: 231 DPINKSEQKGSKFEGSFGNQVQE-RIYTPLE-TRQNICRTANAIRVL-----SILGFIMS 278
             I + E++ S  E  + N+  E   YT L  +R +IC    A R L     SI  F  S
Sbjct: 251 VSITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

[Close]
BLAST of CmaCh02G018150 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-35
Identity = 92/205 (44.88%), Postives = 120/205 (58.54%), Query Frame = 1 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLYGEVVATICGVVE 72
           ++RL  A + L     +      VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 195
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]
BLAST of CmaCh02G018150 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 3.7e-127
Identity = 238/327 (72.78%), Postives = 278/327 (85.02%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRG Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NYEDGVLKGHGT +L 
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR++INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVIC                      L+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           +LT+ PYLVKRRKQHFHHLEQ+GIDLILGCNGFIW+GEHV+ T+DM+ E+ +NK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDDML-EEQVNKTEQQIT 244

Query: 241 KFE-GSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           K +  S   + QE+   PLETRQ++CRTANA+RVLS LGFI+++EVI+ETV+LS SLN+D
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

[Close]
BLAST of CmaCh02G018150 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 6.1e-122
Identity = 231/331 (69.79%), Postives = 272/331 (82.18%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRG Q+SLNQTQK+RLQRALE LES+SSK+NS+ASV VADTIP+NYEDGVLKGHGTLDL 
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRLDIN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC-----------------------LERG 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEEND++C                       LERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           Q+LT+SPYLVKRRKQH H+LE++G+DLILGCNGFIW+GEHV+  + +++ED  +K+EQ  
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVE-AKGILIEDQTDKAEQLN 240

Query: 241 SKFEGS--FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLN 300
           +K   S     + QER YT LETRQNICR ANA+RVL+ LGF ++VEVI ETV+LS SLN
Sbjct: 241 TKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 300

Query: 301 IDVHEMLGSEFCVLTAEKEAERRTS-SKKRG 306
           +D+HEMLGSEF VL AE EA R++  +KK+G
Sbjct: 301 LDIHEMLGSEFYVLVAEGEATRKSMFTKKKG 330

[Close]
BLAST of CmaCh02G018150 vs. TrEMBL
Match: M5W486_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.3e-121
Identity = 233/327 (71.25%), Postives = 266/327 (81.35%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MR LQ+SLNQTQK+RLQRALE LES+SSKANS+ASV VAD+IP+NYEDG+LKGHGT +  
Sbjct: 1   MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CG+VERVNKL+YVRALRARYKPEVGDIIVGRV EVAPKRWR++INYS DAVLM
Sbjct: 61  GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICLE----------------------RGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVIC E                      RGQ
Sbjct: 121 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTV PYLVKRRKQHFHHLE YGIDLI+GCNGFIW+GEHV  T+DM+V D +NKSEQ  +
Sbjct: 181 LLTVPPYLVKRRKQHFHHLENYGIDLIIGCNGFIWVGEHVQVTDDMVV-DQVNKSEQDDA 240

Query: 241 K-FEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           K  E S   + Q + YT  ETR+NICR ANAIRVLS LGF ++VEVI ETV LS S+N+ 
Sbjct: 241 KPDENSISPEDQGKNYTRQETRENICRAANAIRVLSTLGFNITVEVITETVDLSTSINVA 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +HEMLGSEF VL AEKE+ RR+ +KK+
Sbjct: 301 IHEMLGSEFYVLVAEKESVRRSMTKKK 326

[Close]
BLAST of CmaCh02G018150 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 6.7e-121
Identity = 221/327 (67.58%), Postives = 263/327 (80.43%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRGL++ L QTQK+RLQRALE LE++S+KANS+ASV +ADTIP+NYEDG LKGHGT +L 
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+YVR LRARYKPEVGDIIVGRV EVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSS+NLPDGIQRRRTA DELNMR IFEENDVIC                      L+RGQ
Sbjct: 121 LSSINLPDGIQRRRTAEDELNMRAIFEENDVICAEVRGFQHDGLHLQARSQKYGKLQRGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LL++  YLVKRRKQH+H+L++YGIDLILGCNGF+W+GEHV+  ++M+V+       Q   
Sbjct: 181 LLSIPSYLVKRRKQHWHYLDEYGIDLILGCNGFVWVGEHVETKDEMLVDQADKPDSQTSK 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
             + S   + QE+ YTPLETRQNICR ANAIRVLS+LGF++++EV+ME V+L +S N+D 
Sbjct: 241 TNDHSTSLEGQEQTYTPLETRQNICRIANAIRVLSMLGFVVTIEVVMEVVNLGVSQNMDT 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 306
           HEMLGSEFCVL AE+EAERR+  K +G
Sbjct: 301 HEMLGSEFCVLVAEREAERRSQKKNKG 327

[Close]
BLAST of CmaCh02G018150 vs. TrEMBL
Match: A0A103XPF8_CYNCS (Exosome complex RNA-binding protein 1/RRP40/RRP4 OS=Cynara cardunculus var. scolymus GN=Ccrd_003517 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 8.2e-119
Identity = 222/327 (67.89%), Postives = 268/327 (81.96%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRG+++SLNQTQK+RLQRALE LE++SS  NS++SV VADTIP+N EDGVLKGHGT +L 
Sbjct: 1   MRGMEMSLNQTQKLRLQRALELLETLSSGINSNSSVTVADTIPVNQEDGVLKGHGTTELE 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGV+ERVNKL+YVR LRARYKPEVGDIIVGR   VAPKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATVCGVIERVNKLVYVRTLRARYKPEVGDIIVGR---VAPKRWRLEINFSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC-----------------------LERG 180
           LSSMNLPDGIQRRRTAVDELNMR+IFE++DVIC                       LERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEDDDVICAEVRDFMRDGSLQLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           Q+LT+SPYL+KRRKQHFHHL+QYGIDLILGCNGFIW+GEHV+  ++M+ E+PI K + + 
Sbjct: 181 QMLTISPYLIKRRKQHFHHLDQYGIDLILGCNGFIWVGEHVETKDNMIEEEPI-KPDPQN 240

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           +K + S   + +E+ YTPLETRQNICR ANAIRVLS LGF ++++VI++ V LSIS  +D
Sbjct: 241 NKSKTSMSLEEEEQTYTPLETRQNICRIANAIRVLSTLGFSITIDVILDVVDLSISKGLD 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +HEMLG+EF VL AE+EAERR SS +R
Sbjct: 301 IHEMLGAEFSVLVAEREAERRNSSTRR 323

[Close]
BLAST of CmaCh02G018150 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 381.3 bits (978), Expect = 5.5e-106
Identity = 197/327 (60.24%), Postives = 249/327 (76.15%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT ++ 
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC-----------------------LERG 180
           LSSMN+PDGIQRRRT+VDELNMR IF E+DV+C                       LE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+      V DP+   +QK 
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE------VRDPMAIDDQKD 242

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
            +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+LS S NID
Sbjct: 243 EEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of CmaCh02G018150 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 523.1 bits (1346), Expect = 3.3e-145
Identity = 273/328 (83.23%), Postives = 290/328 (88.41%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           M+GLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP-TEDMMVEDPINKSEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP   D M+ED ++K EQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           SKFEG+FGNQVQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+LSISLNID
Sbjct: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 306
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 327

[Close]
BLAST of CmaCh02G018150 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 2.9e-141
Identity = 268/327 (81.96%), Postives = 285/327 (87.16%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRGLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LL VSPYL+KRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDP ED M+ED ++K EQK  
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEG+    VQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+LSISLNIDV
Sbjct: 241 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 306
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]
BLAST of CmaCh02G018150 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 2.9e-141
Identity = 268/327 (81.96%), Postives = 285/327 (87.16%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRGLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LL VSPYL+KRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDP ED M+ED ++K EQK  
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEG+    VQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+LSISLNIDV
Sbjct: 255 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 306
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of CmaCh02G018150 vs. NCBI nr
Match: gi|659128828|ref|XP_008464390.1| (PREDICTED: exosome complex component RRP4-like [Cucumis melo])

HSP 1 Score: 508.4 bits (1308), Expect = 8.4e-141
Identity = 260/327 (79.51%), Postives = 284/327 (86.85%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRGLQ+ LN TQ+ RL+ A +TLES+SSKAN DASV V DT+P +YEDGVLKGHGTLDL 
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVV TICGVVERVNKLIYVR+LRARYKPE+GDI+VGRVTEVAPKRWRLDI+YSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIG+HVD T+D M+ED +NK EQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEG+FGNQ+ ER++TPLETRQNICRTANAIRVLSILGFI++VEVIMETVSLSISLNI+V
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 306
           HEMLGSEF VL AEKE ERR+  KKRG
Sbjct: 301 HEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]
BLAST of CmaCh02G018150 vs. NCBI nr
Match: gi|703076477|ref|XP_010090344.1| (hypothetical protein L484_025009 [Morus notabilis])

HSP 1 Score: 462.6 bits (1189), Expect = 5.3e-127
Identity = 238/327 (72.78%), Postives = 278/327 (85.02%), Query Frame = 1 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60
           MRG Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NYEDGVLKGHGT +L 
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR++INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVIC                      L+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           +LT+ PYLVKRRKQHFHHLEQ+GIDLILGCNGFIW+GEHV+ T+DM+ E+ +NK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDDML-EEQVNKTEQQIT 244

Query: 241 KFE-GSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           K +  S   + QE+   PLETRQ++CRTANA+RVLS LGFI+++EVI+ETV+LS SLN+D
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

The following BLAST results are available for this feature:
BLAST of CmaCh02G018150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP4_ARATH9.7e-10560.24Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1[more]
EXOS2_MOUSE8.6e-3744.60Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1[more]
EXOS2_BOVIN2.5e-3643.46Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1[more]
RRP4_SCHPO2.5e-3638.52Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
EXOS2_HUMAN2.1e-3544.88Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2[more]
BLAST of CmaCh02G018150 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QKH6_9ROSA3.7e-12772.78Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1[more]
F6HQ49_VITVI6.1e-12269.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=... [more]
M5W486_PRUPE2.3e-12171.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1[more]
A0A059AYJ7_EUCGR6.7e-12167.58Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1[more]
A0A103XPF8_CYNCS8.2e-11967.89Exosome complex RNA-binding protein 1/RRP40/RRP4 OS=Cynara cardunculus var. scol... [more]
BLAST of CmaCh02G018150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03360.15.5e-10660.24 ribosomal RNA processing 4[more]
BLAST of CmaCh02G018150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730897|ref|XP_011659879.1|3.3e-14583.23PREDICTED: exosome complex component RRP4-like [Cucumis sativus][more]
gi|659082845|ref|XP_008442061.1|2.9e-14181.96PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo][more]
gi|659082839|ref|XP_008442058.1|2.9e-14181.96PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo][more]
gi|659128828|ref|XP_008464390.1|8.4e-14179.51PREDICTED: exosome complex component RRP4-like [Cucumis melo][more]
gi|703076477|ref|XP_010090344.1|5.3e-12772.78hypothetical protein L484_025009 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009561 megagametogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G018150.1CmaCh02G018150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 157..197
score: 8.1
IPR004088K Homology domain, type 1unknownSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 157..300
score: 4.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 85..154
score: 2.76
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 10..303
score: 2.9E
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 10..303
score: 2.9E
NoneNo IPR availableunknownSSF110324Ribosomal L27 protein-likecoord: 44..82
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G018150CmoCh02G018600Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G018150Cp4.1LG15g00040Cucurbita pepo (Zucchini)cmacpeB615
CmaCh02G018150Cp4.1LG05g01530Cucurbita pepo (Zucchini)cmacpeB647
CmaCh02G018150Carg16813Silver-seed gourdcarcmaB1051
CmaCh02G018150Carg26564Silver-seed gourdcarcmaB1290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G018150Cucumber (Chinese Long) v3cmacucB0750
CmaCh02G018150Watermelon (97103) v2cmawmbB655
CmaCh02G018150Watermelon (97103) v2cmawmbB657
CmaCh02G018150Wax gourdcmawgoB0741
CmaCh02G018150Cucurbita maxima (Rimu)cmacmaB450
CmaCh02G018150Cucurbita moschata (Rifu)cmacmoB598
CmaCh02G018150Wild cucumber (PI 183967)cmacpiB632
CmaCh02G018150Cucumber (Chinese Long) v2cmacuB628
CmaCh02G018150Watermelon (Charleston Gray)cmawcgB567
CmaCh02G018150Watermelon (97103) v1cmawmB563
CmaCh02G018150Bottle gourd (USVL1VR-Ls)cmalsiB582
CmaCh02G018150Cucumber (Gy14) v2cgybcmaB818