CmoCh19G000060.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G000060.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionExosome complex component RRP4
LocationCmo_Chr19 : 45313 .. 50211 (-)
Sequence length1721
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTAGTAAAGGACAACCACCTTCCTGAATAACGCCGCCACTACAACGACAACCACCTTCAGTTTCGTGTTTTGTTCTTATTTATTTTTCTCCTTCCTTTGTTTGTTTGGTTTGTGGATTTTATCTCATTTGCTTATTAATTGGTGATATTGTGAATTGTGAATGCCATGTAATTCTATGCGGATTAAATTGTTTTTGTCACCGTTTTGTGTTTTAATACAATGGTACGATATTCTTACTCTCAACCGTATTCAACAATTCTCCCCTCGAACAAAATATATCATAAAGCTTTGGTTTATGTAGCTCTCAAATAGCGTCCCTTTAATTGAGGCTCGACTCCTTCTTTTGGAGCCTCGAACAAAGTACACAATTTGTTCGATATATGAGTCGCCTAAAGCCTCCCTTTAATCGATGTTCTAATCCTTTCTCTATGGCCCTCGAATAAAGTAAACCCTTTTGTTTGACACGAGTCACCTCCCACCTCTCCTGAGGTCTATGTAACAAAGTACACTGTTTGTTCGACACATGAGTCGCCTCCCACCTCCCTTGAGATCTATGTAGTTCTCAAATAGCTTTTTCTTAATCGAGACTCGACTCCTTTCTCTGGAGTCCTCTAGCAAAGTATACCGTTGATAATTCTATTGACATGACTAAATGATTCTATCGACGTATACTTCGGGCCCATACGTCTTCCATAGGAAGATTCAAAACAGGCCGAAGTGTCCAACTAACAGGTGGTCGGCTGTGGCCCAGTATTCTTTCTTTTTCTCTAGACTAGACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGTCCAGTCCCATCCTTTTTTCTCTCCCCATCCCTCTCCGTTTTATTTGACGGAACCCTAGATTTTCACCGCTGCCGTTCAGGTACGTTCAACGTCGCCCTACCACGTCGTCCACTTCTTTCCTTTGCCTTCTCTTCGTTGAAACCATTGATGCTGTTGCCCTCTGCATTTTAAACTTCGCCGTTTGCTTATCGCCTCGTCCCGGTTCCACTGCAATCGTTGCATAGGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACCTTTTCTTGTCACTTTTTTTTTACATGCATGATCGTACGCGTGTTGGAAGTGAACCGAACATTATTTTCTAAAATCCAAAACCTTGAATGGAAGCTCTAAATTAAAAGTTTATAATACCGTATGTCTTTGCAAATATTTTGTTATATAACCTAGAAATTTTCTTAATGCAGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGTATATAAATACTCACTATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTTGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTTGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTATTATATCTTTTCTGATGTAATTGTCTGTTCTGGATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAGTGAAACAGACAAGAAAAACTTATTTGGAGTCATGGTAATGATGCTGTAAATAGGAAAATGTTTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGTAGAATTCCTACCAGACGATGAATTAGCTGTGCCTTCTGATGAACTTTATGGATAATTTTACTGCCAAATTGCTGCAATTGATCTTTTTCTTAAAGAGTGGTTGCATTTGTTCGAACGTTGGGATAATTGTGTGGAACTTTGATGCATTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGTAAGTTCTTTTTAGCTCGTACTTTCACCTATCACCGTCAGAAAGAATATTGCCACTAAGTTTCTCATGTGACATACATACAGGGGGTTTTCTCCTATATTTTGACATTTTTGAAGAATTAAACTTTTTGCATTTGTGGGGGGAGACAACTCTTAGCAAAATGTAGTAGGGTTAAACAATTATCTTGTGAGAACAGCTGAGATGCGTCCAAGCTGGCTTAGACACGTACAAATATAAAAGAATATTTATATCCTACCTTGGACGTTATCATGGGTACCATGGAGATAGAACCAAAACTTTAAGTTTTGCCGTCATGGCCATTAGGCCGAAACATGATGGTTATGAACTTTTGTTAGTTAATCGCATGCCCTTTGCATAGGCTGCGGCACATTAGATAGATAGATGCACCTTTGGCACCTTGCCGGTTCTAGCCCAGTGTCTTAGCTCAAGTGCCATTTTCTTTTCTGCCTTTGCTCCTTACTGAGGTCCTTAAATTTTCTTGACATTCTAGTGTTGCTGTAGGTGTCTAACTCAAGCGTCTATTTGTGTCTCTTTCCCTTAAGTGCCATTTCTGAAGTTTTATCTTCCATTTTTCTATCCGTTTACTTTATCAGCAAGTGATGCAACATATCCATTGTTGCTTCTTTTTCCCACCTGTCACCTCTCTCGACTCAAGCCATGCCTTGTGCCTTGCACAAAGGCTTGAAGAGATGTACTTTGGCGCTTCAGTTTACCTTGCACTATAATAAATAAACACCGCTCTTATCAGTAGTAATTATTCATGCATATTTTCCATTTAAGAAAAAATAACTTCACCAAATTTTTTCTCAGGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGGTAAAAAGAGTCGCTCCTTTTTAAGCTTCTGGATTTTGATGTAAAAACAAAGAATTTAGAATCAAATTTCCGTACGTCTCCTGCATCCTCACTGGTGTCTTAGGAGAGATTCCATAGAAATATTCTTGATAGCATGTGAATACTGATTTATAGACGAATATCATGGGGCAAATTCTAGTGATTAAAACGAATTCTGGAGATGATTATAAAGTTGTTGCACATGAATAAGGGAGAAAAACCAGGAAGGGATTCATTAAGGTGAAAAGACTCATGGGTGGAAATATTTAGTGATTATAAAGAGGAGCTAGCAGATGGGTGGGAGGCAAAAATGTAAAAGATAGTATAGAGAAGTGATTGTGGAGAACACAAAAAAATTGATTCACTGCTAAGGCGTGAAGGACTATAACACAATAGAACAACACGTCTAATTGTTACATTTTTCCTCTTGCTCGTATGATATGTTCAAGATCTTGGAGGTTACCTTACATTTGAATATGGTATCTTTGATCCAATGGTTATTTTGCTCCGAACAACTTTTCTGGCATCATCTCATCTCATTTCTTTACAATTTGTAAACAAGAGTTGTGCACTGTTATCCAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATAGAGCCTTCCCTAAGGCCTATAGAGTCCTTGAACAGCCTCCCCTTAATCGAGGCTCGACTACACTTCTCTAGAGCCCTCAAATAAAGTACACA

mRNA sequence

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGAAACTGTGAGTAATTTAAATTACTGTTCATGATAACTTTTGCTCCAAAGAGTTTGATTTTCAGAGGAACTAACTGTTAGAATATTTTGTAGAATTTTGGATTACCACCACTTGGTCTGTTAGTGTTAACAGTATAGAATGCAATATTTGCTTAATTATCTGTATTATGCACTATCTATTAGTACATTATAGAGCCTTCCCTAAGGCCTATAGAGTCCTTGAACAGCCTCCCCTTAATCGAGGCTCGACTACACTTCTCTAGAGCCCTCAAATAAAGTACACA

Coding sequence (CDS)

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAACCCGCCATGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCTCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTTGAACCAAACGACGCGTTCAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAGGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCACTTCCGCTGCCGCTCTTGCTAAGAGGCCGCCGTCACGTCCGTCGTCGTCGTCGCTCCACCACGCGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGATATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAACATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA
Homology
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BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match: RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.1e-122
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match: EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.1e-45
Identity = 106/213 (49.77%), Postives = 137/213 (64.32%), Query Frame = 1 

Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWI---GEHVD 374
           +K HFH L   G  +I G NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

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BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match: RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-44
Identity = 106/283 (37.46%), Postives = 166/283 (58.66%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSS+NLP GIQRR+   DEL MRS F+E D++ AEV+ +  DG + +  RS KYGKL  G
Sbjct: 144 LSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNG 203

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
             L V P LV R K H + L   G+D+I   NG++W+ +H    E+      + + E++ 
Sbjct: 204 VFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSSVSITRLEEEA 263

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMT 435
           S  E  + N+  E       TR NI R +  I+ L++    +T
Sbjct: 264 S--ESIYSNENDE---IDGYTRLNISRVSICIKGLASRSLPLT 294

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BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match: EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-44
Identity = 104/214 (48.60%), Postives = 136/214 (63.55%), Query Frame = 1 

Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTED 378
           +K HFH L   G  +I G NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]
BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match: EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-43
Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 1 

Query: 165 KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 224
           ++RL  A + L     +      V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 225 RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 284
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 285 RRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 344
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 345 RKQHFHHLEQYGIDLIFGCNGFIWI 369
           +K HFH L   G  +I G NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match: W9QKH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 2.3e-144
Identity = 260/327 (79.51%), Postives = 299/327 (91.44%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NY+DGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR+ INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           +LT+ PYLVKRRKQHFHHLEQ+GIDLI GCNGFIW+GEHV+ T+D M+E+QVNK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 393 KFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K +    + + QE+   PLETRQ++CRTANA+RVLS LGFI+T+EVI+ETV+LS SLN++
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

[Close]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match: M5W486_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 1.6e-140
Identity = 258/327 (78.90%), Postives = 289/327 (88.38%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MRELQ+SLNQTQK+RLQRALE LES+SSKANS+ASV VAD+IP+NY+DG+LKGHGT + N
Sbjct: 1   MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CG+VERVNKL+YVRALRARYKPEVGDIIVGRV EVAPKRWR+ INYS DAVLM
Sbjct: 61  GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL RGQ
Sbjct: 121 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LLTV PYLVKRRKQHFHHLE YGIDLI GCNGFIW+GEHV  T+DM++ DQVNKSEQ  +
Sbjct: 181 LLTVPPYLVKRRKQHFHHLENYGIDLIIGCNGFIWVGEHVQVTDDMVV-DQVNKSEQDDA 240

Query: 393 K-FEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K  E +   + Q + YT  ETR+NICR ANAIRVLS LGF +TVEVI ETV LS S+N+ 
Sbjct: 241 KPDENSISPEDQGKNYTRQETRENICRAANAIRVLSTLGFNITVEVITETVDLSTSINVA 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +HEMLGSEF VL AEKE+ RR+ +KK+
Sbjct: 301 IHEMLGSEFYVLVAEKESVRRSMTKKK 326

[Close]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match: F6HQ49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 5.6e-138
Identity = 252/331 (76.13%), Postives = 295/331 (89.12%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK+NS+ASV VADTIP+NY+DGVLKGHGTLDL+
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+Y+R LRARYKPE GDIIVGRVTE+APKRWRL+IN+SQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEEND++CAEVRGFQHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           Q+LT+SPYLVKRRKQH H+LE++G+DLI GCNGFIW+GEHV+  + ++IEDQ +K+EQ  
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVE-AKGILIEDQTDKAEQLN 240

Query: 393 SKFEGT--FGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLN 452
           +K   +     + QER YT LETRQNICR ANA+RVL+NLGF +TVEVI ETV+LS SLN
Sbjct: 241 TKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 300

Query: 453 INVHEMLGSEFCVLTAEKEAERRTS-SKKRG 480
           +++HEMLGSEF VL AE EA R++  +KK+G
Sbjct: 301 LDIHEMLGSEFYVLVAEGEATRKSMFTKKKG 330

[Close]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match: A0A059AYJ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.1e-136
Identity = 244/328 (74.39%), Postives = 289/328 (88.11%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR L++ L QTQK+RLQRALE LE++S+KANS+ASV +ADTIP+NY+DG LKGHGT +LN
Sbjct: 1   MRGLKLPLTQTQKVRLQRALEKLEALSTKANSNASVAIADTIPVNYEDGFLKGHGTTELN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVR LRARYKPEVGDIIVGRV EVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATVCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLDINYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSS+NLPDGIQRRRTA DELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 121 LSSINLPDGIQRRRTAEDELNMRAIFEENDVICAEVRGFQHDGLHLQARSQKYGKLQRGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LL++  YLVKRRKQH+H+L++YGIDLI GCNGF+W+GEHV+ T+D M+ DQ +K + + S
Sbjct: 181 LLSIPSYLVKRRKQHWHYLDEYGIDLILGCNGFVWVGEHVE-TKDEMLVDQADKPDSQTS 240

Query: 393 KF-EGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K  + +   + QE+ YTPLETRQNICR ANAIRVLS LGF++T+EV+ME V+L  S N++
Sbjct: 241 KTNDHSTSLEGQEQTYTPLETRQNICRIANAIRVLSMLGFVVTIEVVMEVVNLGVSQNMD 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKRG 480
            HEMLGSEFCVL AE+EAERR+  K +G
Sbjct: 301 THEMLGSEFCVLVAEREAERRSQKKNKG 327

[Close]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match: A0A151TUE4_CAJCA (Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 1.9e-133
Identity = 238/328 (72.56%), Postives = 287/328 (87.50%), Query Frame = 1 

Query: 152 DMRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDL 211
           ++R +Q+ L+QTQK+RLQ+ALE L+S+S K N DASV+VAD+I +N++DGVLKGHGT DL
Sbjct: 4   EVRGIQLPLSQTQKVRLQKALEQLQSLSLKVNFDASVVVADSISVNHEDGVLKGHGTADL 63

Query: 212 NGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVL 271
           NGEVVAT+CGVVERVNKL+YVRALR+RYKPEVGDI++GRV EVA KRWRL INYSQDAVL
Sbjct: 64  NGEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYSQDAVL 123

Query: 272 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 331
           MLSSMN+PDG+QRRRTAVDELNMR IFEENDV+CAEVRGFQHDGLHLQARS+KYGKL RG
Sbjct: 124 MLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLTRG 183

Query: 332 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSE-QK 391
           QLL VSPYLVKR+KQHFHHLE++GIDLI GCNGFIW+GEH++  +D M+EDQVN+S+ Q 
Sbjct: 184 QLLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDD-MVEDQVNQSDPQV 243

Query: 392 GSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNI 451
               + +   + QE+ YT LETR+ ICR ANAIRVLS LGF +T+E+I   + LS SLN+
Sbjct: 244 LLPSKNSVSLEEQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSLNL 303

Query: 452 NVHEMLGSEFCVLTAEKEAERRTSSKKR 479
           ++H+MLGSEFCVL AEKEAERR+S+KK+
Sbjct: 304 DIHDMLGSEFCVLVAEKEAERRSSNKKK 330

[Close]
BLAST of CmoCh19G000060.1 vs. TAIR10
Match: AT1G03360.1 (AT1G03360.1 ribosomal RNA processing 4)

HSP 1 Score: 439.1 bits (1128), Expect = 3.5e-123
Identity = 221/327 (67.58%), Postives = 272/327 (83.18%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 332
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 333 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 392
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match: gi|778730897|ref|XP_011659879.1| (PREDICTED: exosome complex component RRP4-like [Cucumis sativus])

HSP 1 Score: 578.9 bits (1491), Expect = 7.9e-162
Identity = 295/328 (89.94%), Postives = 310/328 (94.51%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           M+ LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDP-TEDMMIEDQVNKSEQKG 392
           LLTVSPYL+KRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP   D MIEDQV+K EQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 393 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           SKFEGTFGNQVQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+
Sbjct: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKRG 480
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 327

[Close]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match: gi|659082839|ref|XP_008442058.1| (PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo])

HSP 1 Score: 567.0 bits (1460), Expect = 3.1e-158
Identity = 292/336 (86.90%), Postives = 308/336 (91.67%), Query Frame = 1 

Query: 144 VVPTAVAPDMRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVL 203
           VV    + DMR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVL
Sbjct: 6   VVYPQCSSDMRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVL 65

Query: 204 KGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNI 263
           KGHGTLDLNGEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+I
Sbjct: 66  KGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDI 125

Query: 264 NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQ 323
           NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQ
Sbjct: 126 NYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQ 185

Query: 324 KYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQ 383
           KYGKLERGQLL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED 
Sbjct: 186 KYGKLERGQLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDH 245

Query: 384 VNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVS 443
           V+K EQK  KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+
Sbjct: 246 VDKPEQKALKFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVN 305

Query: 444 LSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 480
           LS SLNI+VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 306 LSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match: gi|659082845|ref|XP_008442061.1| (PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo])

HSP 1 Score: 564.3 bits (1453), Expect = 2.0e-157
Identity = 289/327 (88.38%), Postives = 304/327 (92.97%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR LQ+SLN TQKIRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LL VSPYL+KRRKQHFHHL+QYGIDLI GCNGFIWIGEHVDP ED MIED V+K EQK  
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 240

Query: 393 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 452
           KFEGT    VQE VYTPLETRQNICRTANAIRVLS LGFIMTVEVIME V+LS SLNI+V
Sbjct: 241 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 453 HEMLGSEFCVLTAEKEAERRTSSKKRG 480
           HEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match: gi|659128828|ref|XP_008464390.1| (PREDICTED: exosome complex component RRP4-like [Cucumis melo])

HSP 1 Score: 563.5 bits (1451), Expect = 3.5e-157
Identity = 284/327 (86.85%), Postives = 302/327 (92.35%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR LQI LN TQ+ RL+ A + LES+SSKAN DASV V DT+P +Y+DGVLKGHGTLDLN
Sbjct: 1   MRGLQIFLNHTQQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 60

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVV TICGVVERVNKLIYVR+LRARYKPE+GDI+VGRVTEVAPKRWRL+I+YSQDAVLM
Sbjct: 61  GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 120

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIG+HVD T+D MIEDQVNK EQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKGS 240

Query: 393 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 452
           KFEG FGNQ+ ERV+TPLETRQNICRTANAIRVLS LGFI+TVEVIMETVSLS SLNINV
Sbjct: 241 KFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFIITVEVIMETVSLSISLNINV 300

Query: 453 HEMLGSEFCVLTAEKEAERRTSSKKRG 480
           HEMLGSEF VL AEKE ERR+  KKRG
Sbjct: 301 HEMLGSEFFVLVAEKEVERRSCRKKRG 327

[Close]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match: gi|703076477|ref|XP_010090344.1| (hypothetical protein L484_025009 [Morus notabilis])

HSP 1 Score: 520.4 bits (1339), Expect = 3.4e-144
Identity = 260/327 (79.51%), Postives = 299/327 (91.44%), Query Frame = 1 

Query: 153 MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 212
           MR  Q+SLNQTQK+RLQRALE LES+SSK NS+ASV VAD+IP+NY+DGVLKGHGT +LN
Sbjct: 5   MRGTQLSLNQTQKVRLQRALEQLESLSSKVNSNASVTVADSIPVNYEDGVLKGHGTSELN 64

Query: 213 GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 272
           GEVVAT+CGVVERVNKL+YVRALRARYKPEVGDIIVGRV  VAPKRWR+ INYSQDAVLM
Sbjct: 65  GEVVATVCGVVERVNKLVYVRALRARYKPEVGDIIVGRVVVVAPKRWRIEINYSQDAVLM 124

Query: 273 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 332
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKL+RGQ
Sbjct: 125 LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ 184

Query: 333 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 392
           +LT+ PYLVKRRKQHFHHLEQ+GIDLI GCNGFIW+GEHV+ T+D M+E+QVNK+EQ+ +
Sbjct: 185 MLTIPPYLVKRRKQHFHHLEQFGIDLILGCNGFIWVGEHVEATDD-MLEEQVNKTEQQIT 244

Query: 393 KFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 452
           K +    + + QE+   PLETRQ++CRTANA+RVLS LGFI+T+EVI+ETV+LS SLN++
Sbjct: 245 KSDRNSASLEEQEQSSIPLETRQSLCRTANAVRVLSTLGFIVTIEVILETVNLSSSLNLD 304

Query: 453 VHEMLGSEFCVLTAEKEAERRTSSKKR 479
           VHEMLGSEFCVL AEKEAERRT +KK+
Sbjct: 305 VHEMLGSEFCVLVAEKEAERRTLNKKK 330

The following BLAST results are available for this feature:
BLAST of CmoCh19G000060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP4_ARATH6.1e-12267.58Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1[more]
EXOS2_MOUSE6.1e-4549.77Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=1 SV=1[more]
RRP4_SCHPO1.0e-4437.46Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
EXOS2_BOVIN1.4e-4448.60Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1[more]
EXOS2_HUMAN1.1e-4350.24Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2[more]
BLAST of CmoCh19G000060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QKH6_9ROSA2.3e-14479.51Uncharacterized protein OS=Morus notabilis GN=L484_025009 PE=4 SV=1[more]
M5W486_PRUPE1.6e-14078.90Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008572mg PE=4 SV=1[more]
F6HQ49_VITVI5.6e-13876.13Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00700 PE=4 SV=... [more]
A0A059AYJ7_EUCGR3.1e-13674.39Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01542 PE=4 SV=1[more]
A0A151TUE4_CAJCA1.9e-13372.56Exosome complex exonuclease RRP4 OS=Cajanus cajan GN=KK1_009893 PE=4 SV=1[more]
BLAST of CmoCh19G000060.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03360.13.5e-12367.58 ribosomal RNA processing 4[more]
BLAST of CmoCh19G000060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730897|ref|XP_011659879.1|7.9e-16289.94PREDICTED: exosome complex component RRP4-like [Cucumis sativus][more]
gi|659082839|ref|XP_008442058.1|3.1e-15886.90PREDICTED: exosome complex component RRP4 isoform X1 [Cucumis melo][more]
gi|659082845|ref|XP_008442061.1|2.0e-15788.38PREDICTED: exosome complex component RRP4 isoform X2 [Cucumis melo][more]
gi|659128828|ref|XP_008464390.1|3.5e-15786.85PREDICTED: exosome complex component RRP4-like [Cucumis melo][more]
gi|703076477|ref|XP_010090344.1|3.4e-14479.51hypothetical protein L484_025009 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
IPR022967S1_dom
IPR026699Exosome_RNA_bind1/RRP40/RRP4
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009561 megagametogenesis
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G000060CmoCh19G000060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G000060.1CmoCh19G000060.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G000060.1.three_prime_UTR.1CmoCh19G000060.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G000060.1.CDS.10CmoCh19G000060.1.CDS.10CDS
CmoCh19G000060.1.CDS.9CmoCh19G000060.1.CDS.9CDS
CmoCh19G000060.1.CDS.8CmoCh19G000060.1.CDS.8CDS
CmoCh19G000060.1.CDS.7CmoCh19G000060.1.CDS.7CDS
CmoCh19G000060.1.CDS.6CmoCh19G000060.1.CDS.6CDS
CmoCh19G000060.1.CDS.5CmoCh19G000060.1.CDS.5CDS
CmoCh19G000060.1.CDS.4CmoCh19G000060.1.CDS.4CDS
CmoCh19G000060.1.CDS.3CmoCh19G000060.1.CDS.3CDS
CmoCh19G000060.1.CDS.2CmoCh19G000060.1.CDS.2CDS
CmoCh19G000060.1.CDS.1CmoCh19G000060.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G000060.1.exon.10CmoCh19G000060.1.exon.10exon
CmoCh19G000060.1.exon.9CmoCh19G000060.1.exon.9exon
CmoCh19G000060.1.exon.8CmoCh19G000060.1.exon.8exon
CmoCh19G000060.1.exon.7CmoCh19G000060.1.exon.7exon
CmoCh19G000060.1.exon.6CmoCh19G000060.1.exon.6exon
CmoCh19G000060.1.exon.5CmoCh19G000060.1.exon.5exon
CmoCh19G000060.1.exon.4CmoCh19G000060.1.exon.4exon
CmoCh19G000060.1.exon.3CmoCh19G000060.1.exon.3exon
CmoCh19G000060.1.exon.2CmoCh19G000060.1.exon.2exon
CmoCh19G000060.1.exon.1CmoCh19G000060.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 331..371
score: 4.1
IPR004088K Homology domain, type 1unknownSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 331..474
score: 1.26
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 237..328
score: 4.49
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 242..321
score: 5.
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 162..477
score: 5.0E
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 162..477
score: 5.0E
NoneNo IPR availableunknownSSF110324Ribosomal L27 protein-likecoord: 196..234
score: 1.2