CmoCh18G002810 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G002810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 1842684 .. 1843960 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAGATGATGCTTCATAATCCTCAGAATACTGGACTCAGGGATTTGCAAGAGAAGCTACCAAGCAGCTTCCTGCTGCTGATGCTTGTTAGGATTTGTGTTTCCTAATTCTAAAGGAAACTTCCTAGGATCCCATCCAGACAGGAACCAATTAGCAGTTTCAACCTTCAAGGTAATCCAGTTTTGGAGAAAATGTTCCAACTTTTCTACAGGGAGGTTTGGAGAAAATCAACTTTTCTATAGGGAGGTTTGTTCCTGCAATTGTATGTTTGAAAATATATGAAGTTTTTCGATAACGTCTCATCCCACCCACCCCCAAGTCAAAATGTACGTAAGGATGAACATGTGAGATCACATATTGGTTAGAGAGGGAACAAAAATATTCCTTATAAAGATGTGGAAACCTCTCCCTAACAAAGACATTCTAAAAACCGTGAGGCTAACGGCGATACATAACGGGTCAAAGCAAACAATATCGGCTCGCAATTGACTTAGGATTATTACAAATGGTATCAAAGCTCAACAACAGACGGTGTGCCAGAGAGGATGCTCAAAGGGAGATGAATTGTGAGATCCCAGGTCGGTTGGTGAGGGGAACGAAATATTCCTCATAAATGTGTGGAAACCTCTCCCTAACAAACGCATTTTAAAAACTGTAAAGCTGACAGCGATACGTAACGGGTCAAAGTGGACAAAATATGAACTTGAACCACCACAAACCAAAAACTAATGTCAAGTTTCTCACTTTATTGTCAAGTTTCCATCAATACATAAAGTACTAACCTAACAGGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA

mRNA sequence

ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA

Coding sequence (CDS)

ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA
BLAST of CmoCh18G002810 vs. TrEMBL
Match: A0A0A0LX43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-27
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1

Query: 7   APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQS 66
           APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS
Sbjct: 21  APVAIGTRGTIGSLVKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQS 80

Query: 67  IMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           +M WRRK K T   FV K            MNKISG  YTIL+NDFHS HM
Sbjct: 81  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

BLAST of CmoCh18G002810 vs. TrEMBL
Match: I1M118_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G206400 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1

Query: 5   VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASS-SCSSSPPTF 64
           + APVAIGTRGT+GSLV+ EI+Y+ K ELER  SS          DM S  S S S P+F
Sbjct: 1   MAAPVAIGTRGTIGSLVRKEIEYFTKFELERRASSQKPQQHFVDMDMVSGRSYSISRPSF 60

Query: 65  WQSIMLWRRKKKRTGICFVPK-------------MNKISGFGYTILRNDFHSFHM 106
           W+ +  W+R+K+R    F+PK             +NK +GF Y ILRND ++FH+
Sbjct: 61  WELLTTWKRRKRRGTSGFLPKICSVIEVAESHNHLNKTAGFSYRILRNDINNFHL 115

BLAST of CmoCh18G002810 vs. TrEMBL
Match: B9H1E3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01820g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGTVGSLV+ EI+Y++K E++RC  +SS   + Q  D+ASS+   S P+FW 
Sbjct: 19  TAPVAIGTRGTVGSLVRKEIEYFSKFEIDRC--ASSRKPQEQVADIASSN-GQSRPSFWS 78

Query: 66  SIMLWRRKKKRTGICFVP------------KMNKISGFGYTILRND 100
             M W+RKK+R    F+P            ++++I GF Y IL++D
Sbjct: 79  LTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 121

BLAST of CmoCh18G002810 vs. TrEMBL
Match: A9P9Y1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGTVGSLV+ EI+Y++K E++RC  +SS   + Q  D+ASS+   S P+FW 
Sbjct: 4   TAPVAIGTRGTVGSLVRKEIEYFSKFEIDRC--ASSRKPQEQVADIASSN-GQSRPSFWS 63

Query: 66  SIMLWRRKKKRTGICFVP------------KMNKISGFGYTILRND 100
             M W+RKK+R    F+P            ++++I GF Y IL++D
Sbjct: 64  LTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 106

BLAST of CmoCh18G002810 vs. TrEMBL
Match: A0A067JDG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21244 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 7   APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQS 66
           +PVAIGTRGTVGSLV+ EI+Y+ K+EL+RC SSS S       DM SSS   S P+FW  
Sbjct: 5   SPVAIGTRGTVGSLVRREIEYFTKVELDRCVSSSKS-----EIDMGSSS-GRSRPSFWSL 64

Query: 67  IMLWRRKKKR-------TGICF---VPKMNKISGFGYTILRND 100
            M W+RKK+R         IC    V   N ISGF Y IL+ND
Sbjct: 65  RMNWKRKKRRGSSNGFLPSICSAVEVADTNGISGFSYRILKND 101

BLAST of CmoCh18G002810 vs. TAIR10
Match: AT4G21780.1 (AT4G21780.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-09
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1

Query: 5   VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSS 64
           + AP+AIGTRGT+GSLV+ EIDY+            R  +S  + +  ++ D +SS   S
Sbjct: 1   MAAPIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGS 60

Query: 65  SPPTFWQSIMLWRRKKKRT---GICFVPKM---------NKISGFGYTILRND 100
                W S   WR+KK++T   G  F P M         N++ GF Y IL++D
Sbjct: 61  -----WFSKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENRVPGFNYRILKSD 108

BLAST of CmoCh18G002810 vs. NCBI nr
Match: gi|659067770|ref|XP_008441210.1| (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-28
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1

Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 20  TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 79

Query: 66  SIMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           SIM WRRKKK T   F+ K            MNKISG  YTIL+NDFHS H+
Sbjct: 80  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 127

BLAST of CmoCh18G002810 vs. NCBI nr
Match: gi|778664866|ref|XP_011648422.1| (PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1

Query: 7   APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQS 66
           APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS
Sbjct: 5   APVAIGTRGTIGSLVKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQS 64

Query: 67  IMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           +M WRRK K T   FV K            MNKISG  YTIL+NDFHS HM
Sbjct: 65  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

BLAST of CmoCh18G002810 vs. NCBI nr
Match: gi|700209440|gb|KGN64536.1| (hypothetical protein Csa_1G063600 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1

Query: 7   APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQS 66
           APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS
Sbjct: 21  APVAIGTRGTIGSLVKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQS 80

Query: 67  IMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           +M WRRK K T   FV K            MNKISG  YTIL+NDFHS HM
Sbjct: 81  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

BLAST of CmoCh18G002810 vs. NCBI nr
Match: gi|356548977|ref|XP_003542875.1| (PREDICTED: uncharacterized protein LOC100803137 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1

Query: 5   VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASS-SCSSSPPTF 64
           + APVAIGTRGT+GSLV+ EI+Y+ K ELER  SS          DM S  S S S P+F
Sbjct: 1   MAAPVAIGTRGTIGSLVRKEIEYFTKFELERRASSQKPQQHFVDMDMVSGRSYSISRPSF 60

Query: 65  WQSIMLWRRKKKRTGICFVPK-------------MNKISGFGYTILRNDFHSFHM 106
           W+ +  W+R+K+R    F+PK             +NK +GF Y ILRND ++FH+
Sbjct: 61  WELLTTWKRRKRRGTSGFLPKICSVIEVAESHNHLNKTAGFSYRILRNDINNFHL 115

BLAST of CmoCh18G002810 vs. NCBI nr
Match: gi|566164423|ref|XP_002305590.2| (hypothetical protein POPTR_0004s01820g [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGTVGSLV+ EI+Y++K E++RC  +SS   + Q  D+ASS+   S P+FW 
Sbjct: 19  TAPVAIGTRGTVGSLVRKEIEYFSKFEIDRC--ASSRKPQEQVADIASSN-GQSRPSFWS 78

Query: 66  SIMLWRRKKKRTGICFVP------------KMNKISGFGYTILRND 100
             M W+RKK+R    F+P            ++++I GF Y IL++D
Sbjct: 79  LTMSWKRKKRRGSSGFLPSICSAVEVADSNRLSRIPGFSYRILKDD 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LX43_CUCSA2.3e-2764.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063600 PE=4 SV=1[more]
I1M118_SOYBN6.9e-1645.22Uncharacterized protein OS=Glycine max GN=GLYMA_13G206400 PE=4 SV=1[more]
B9H1E3_POPTR2.2e-1446.23Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01820g PE=4 SV=1[more]
A9P9Y1_POPTR2.2e-1446.23Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A0A067JDG0_JATCU2.9e-1452.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21244 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21780.14.3e-0936.28 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659067770|ref|XP_008441210.1|5.1e-2864.29PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo][more]
gi|778664866|ref|XP_011648422.1|3.3e-2764.86PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus][more]
gi|700209440|gb|KGN64536.1|3.3e-2764.86hypothetical protein Csa_1G063600 [Cucumis sativus][more]
gi|356548977|ref|XP_003542875.1|1.0e-1545.22PREDICTED: uncharacterized protein LOC100803137 [Glycine max][more]
gi|566164423|ref|XP_002305590.2|3.2e-1446.23hypothetical protein POPTR_0004s01820g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0050665 hydrogen peroxide biosynthetic process
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0016926 protein desumoylation
biological_process GO:0009620 response to fungus
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0047714 galactolipase activity
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G002810.1CmoCh18G002810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35131FAMILY NOT NAMEDcoord: 1..109
score: 2.1
NoneNo IPR availablePANTHERPTHR35131:SF1SUBFAMILY NOT NAMEDcoord: 1..109
score: 2.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G002810Cucsa.045320Cucumber (Gy14) v1cgycmoB0034
CmoCh18G002810CmaCh13G007280Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G002810Cla014461Watermelon (97103) v1cmowmB374
CmoCh18G002810Cla019394Watermelon (97103) v1cmowmB360
CmoCh18G002810Csa1G063600Cucumber (Chinese Long) v2cmocuB380
CmoCh18G002810Csa6G514830Cucumber (Chinese Long) v2cmocuB413
CmoCh18G002810MELO3C007381Melon (DHL92) v3.5.1cmomeB373
CmoCh18G002810MELO3C002469Melon (DHL92) v3.5.1cmomeB356
CmoCh18G002810ClCG01G022080Watermelon (Charleston Gray)cmowcgB339
CmoCh18G002810ClCG03G004870Watermelon (Charleston Gray)cmowcgB350
CmoCh18G002810CSPI06G33660Wild cucumber (PI 183967)cmocpiB418
CmoCh18G002810CSPI01G10840Wild cucumber (PI 183967)cmocpiB383
CmoCh18G002810Lsi02G006130Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G002810Lsi01G004160Bottle gourd (USVL1VR-Ls)cmolsiB354
CmoCh18G002810Cp4.1LG09g09010Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G002810MELO3C002469.2Melon (DHL92) v3.6.1cmomedB408
CmoCh18G002810CsaV3_1G010900Cucumber (Chinese Long) v3cmocucB0457
CmoCh18G002810CsaV3_6G049140Cucumber (Chinese Long) v3cmocucB0494
CmoCh18G002810Cla97C03G056020Watermelon (97103) v2cmowmbB394
CmoCh18G002810Cla97C01G021730Watermelon (97103) v2cmowmbB378
CmoCh18G002810Bhi08G001524Wax gourdcmowgoB0519
CmoCh18G002810Bhi03G000434Wax gourdcmowgoB0514
CmoCh18G002810CsGy6G033200Cucumber (Gy14) v2cgybcmoB750
CmoCh18G002810CsGy1G010720Cucumber (Gy14) v2cgybcmoB082
CmoCh18G002810Carg07536Silver-seed gourdcarcmoB1352
CmoCh18G002810Carg13706Silver-seed gourdcarcmoB1245
CmoCh18G002810Carg07833Silver-seed gourdcarcmoB0883
CmoCh18G002810Carg06856Silver-seed gourdcarcmoB0673
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G002810CmoCh13G007560Cucurbita moschata (Rifu)cmocmoB170
CmoCh18G002810CmoCh07G002930Cucurbita moschata (Rifu)cmocmoB349