Carg06856 (gene) Silver-seed gourd

Overview
NameCarg06856
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_012 : 1445120 .. 1445566 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

mRNA sequence

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Coding sequence (CDS)

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Protein sequence

MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM
Homology
[Close]
BLAST of Carg06856 vs. NCBI nr
Match: XP_022140128.1 (uncharacterized protein LOC111010862 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 64/126 (50.79%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP STTF +  ++MAA  TAPVAIGTRGTVGSLVK EIDY+AKIE ERC        X
Sbjct: 3   HSKP-STTFCKFLEEMAA--TAPVAIGTRGTVGSLVKKEIDYFAKIEFERCSGNDMASSX 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGICFV------PKMNRISGFGYTILRND 148
           XXXXXXX                        T IC         ++N+ISGF YTIL+ND
Sbjct: 63  XXXXXXXTFWHTVMSWRRKKKRIGNRFI---TKICSAFDVSGSNRLNKISGFNYTILQND 122

[Close]
BLAST of Carg06856 vs. NCBI nr
Match: KGN64536.1 (hypothetical protein Csa_1G063600 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 53/128 (41.41%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE           
Sbjct: 3   HNKPTN-TFYKSHYGMAA--IAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGP 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--TGICFV------PKMNRISGFGYTILR 148
                                         R  T +C         +MN+ISG  YTIL+
Sbjct: 63  EMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQ 122

[Close]
BLAST of Carg06856 vs. NCBI nr
Match: XP_011648422.1 (PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 44/107 (41.12%), Postives = 50/107 (46.73%), Query Frame = 0 

Query: 50  APVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 109
           APVAIGTRGT+GSLVK EIDY+AKIELE                                
Sbjct: 5   APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSLMSW 64

Query: 110 XXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                    R  T +C         +MN+ISG  YTIL+NDFHS HM
Sbjct: 65  RRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]
BLAST of Carg06856 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 43/108 (39.81%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE                               
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIMS 63

Query: 109 XXXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                     R  T +C         +MN+ISG  YTIL+NDFHS H+
Sbjct: 64  WRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]
BLAST of Carg06856 vs. NCBI nr
Match: XP_002518509.2 (uncharacterized protein LOC8284226 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 28 LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERC 80
          +HYKPSS        KMAA  TAPVAIGTRGT+GSLV+ EIDY+ KIELERC
Sbjct: 1  MHYKPSSIA-TNLPAKMAA-ATAPVAIGTRGTIGSLVRKEIDYFTKIELERC 50

[Close]
BLAST of Carg06856 vs. TAIR10
Match: AT4G21780.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 48 VTAPVAIGTRGTVGSLVKNEIDYY 72
          + AP+AIGTRGT+GSLV+ EIDY+
Sbjct: 1  MAAPIAIGTRGTIGSLVRKEIDYF 24

[Close]
BLAST of Carg06856 vs. TrEMBL
Match: tr|A0A0A0LX43|A0A0A0LX43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-11
Identity = 53/128 (41.41%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE           
Sbjct: 3   HNKPTN-TFYKSHYGMAA--IAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGP 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--TGICFV------PKMNRISGFGYTILR 148
                                         R  T +C         +MN+ISG  YTIL+
Sbjct: 63  EMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQ 122

[Close]
BLAST of Carg06856 vs. TrEMBL
Match: tr|A0A1S4DSE9|A0A1S4DSE9_CUCME (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 43/108 (39.81%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE                               
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIMS 63

Query: 109 XXXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                     R  T +C         +MN+ISG  YTIL+NDFHS H+
Sbjct: 64  WRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]
BLAST of Carg06856 vs. TrEMBL
Match: tr|A0A061GHQ5|A0A061GHQ5_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030192 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 45/132 (34.09%), Postives = 55/132 (41.67%), Query Frame = 0 

Query: 28  LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXX 87
           + YK S T      +KMAA    PVAIGTRGTVGSL+K EI+Y+ K ELE          
Sbjct: 1   MQYKASFTNTKFFPEKMAA--ATPVAIGTRGTVGSLLKKEIEYFTKFELEGRGSCWKPHG 60

Query: 88  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGICFVPKM------------NRISGFG 147
                                          R G  F+P M            NRI GF 
Sbjct: 61  QVVEMVQMDCRSGHGRQSLWLSITGWKRKKRRGGSGFLPSMCSATEVADKNQLNRIPGFN 120

[Close]
BLAST of Carg06856 vs. TrEMBL
Match: tr|B9RXP0|B9RXP0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0905290 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 46 ATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERC 80
          A  TAPVAIGTRGT+GSLV+ EIDY+ KIELERC
Sbjct: 2  AAATAPVAIGTRGTIGSLVRKEIDYFTKIELERC 35

[Close]
BLAST of Carg06856 vs. TrEMBL
Match: tr|I1M118|I1M118_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 38/115 (33.04%), Postives = 50/115 (43.48%), Query Frame = 0 

Query: 48  VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXX 107
           + APVAIGTRGT+GSLV+ EI+Y+ K ELER                             
Sbjct: 1   MAAPVAIGTRGTIGSLVRKEIEYFTKFELERRASSQKPQQHFVDMDMVSGRSYSISRPSF 60

Query: 108 XXXXXXXXXXXRTGIC-FVPK-------------MNRISGFGYTILRNDFHSFHM 149
                      R G   F+PK             +N+ +GF Y ILRND ++FH+
Sbjct: 61  WELLTTWKRRKRRGTSGFLPKICSVIEVAESHNHLNKTAGFSYRILRNDINNFHL 115

The following BLAST results are available for this feature:
BLAST of Carg06856 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140128.11.1e-1250.79uncharacterized protein LOC111010862 [Momordica charantia][more]
KGN64536.11.0e-1041.41hypothetical protein Csa_1G063600 [Cucumis sativus][more]
XP_011648422.12.1e-0841.12PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus][more]
XP_016898893.12.1e-0839.81PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo][more]
XP_002518509.26.1e-0869.23uncharacterized protein LOC8284226 [Ricinus communis][more]
BLAST of Carg06856 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21780.12.9e-0470.83unknown protein[more]
BLAST of Carg06856 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06856 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LX43|A0A0A0LX43_CUCSA6.6e-1141.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1[more]
tr|A0A1S4DSE9|A0A1S4DSE9_CUCME1.4e-0839.81uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=... [more]
tr|A0A061GHQ5|A0A061GHQ5_THECC2.2e-0634.09Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030192 PE=4 SV=1[more]
tr|B9RXP0|B9RXP0_RICCO4.9e-0679.41Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0905290 PE=4 SV=1[more]
tr|I1M118|I1M118_SOYBN1.1e-0533.04Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06856-RACarg06856-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..105
NoneNo IPR availablePANTHERPTHR35131FAMILY NOT NAMEDcoord: 39..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06856Cla019394Watermelon (97103) v1carwmB0489
Carg06856Cla014461Watermelon (97103) v1carwmB0491
Carg06856Csa6G514830Cucumber (Chinese Long) v2carcuB0525
Carg06856Csa1G063600Cucumber (Chinese Long) v2carcuB0523
Carg06856MELO3C007381Melon (DHL92) v3.5.1carmeB0501
Carg06856MELO3C002469Melon (DHL92) v3.5.1carmeB0499
Carg06856ClCG03G004870Watermelon (Charleston Gray)carwcgB0480
Carg06856ClCG01G022080Watermelon (Charleston Gray)carwcgB0478
Carg06856CSPI06G33660Wild cucumber (PI 183967)carcpiB0533
Carg06856CSPI01G10840Wild cucumber (PI 183967)carcpiB0531
Carg06856Cucsa.045320Cucumber (Gy14) v1carcgyB0565
Carg06856CmaCh13G007280Cucurbita maxima (Rimu)carcmaB0691
Carg06856CmoCh18G002810Cucurbita moschata (Rifu)carcmoB0673
Carg06856CmoCh13G007560Cucurbita moschata (Rifu)carcmoB0672
Carg06856Lsi01G004160Bottle gourd (USVL1VR-Ls)carlsiB446
Carg06856Lsi02G006130Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06856Cp4.1LG09g09010Cucurbita pepo (Zucchini)carcpeB0694
Carg06856CsGy1G010720Cucumber (Gy14) v2carcgybB0500
Carg06856CsGy6G033200Cucumber (Gy14) v2carcgybB0502
Carg06856MELO3C007381.2Melon (DHL92) v3.6.1carmedB0506
Carg06856MELO3C002469.2Melon (DHL92) v3.6.1carmedB0504
Carg06856CsaV3_1G010900Cucumber (Chinese Long) v3carcucB0529
Carg06856Cla97C01G021730Watermelon (97103) v2carwmbB0515
Carg06856Cla97C03G056020Watermelon (97103) v2carwmbB0517
Carg06856Bhi03G000434Wax gourdcarwgoB0598
Carg06856Bhi08G001524Wax gourdcarwgoB0603
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06856Carg13706Silver-seed gourdcarcarB480
Carg06856Carg07536Silver-seed gourdcarcarB483
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06856Cucurbita pepo (Zucchini)carcpeB0697
Carg06856Cucumber (Gy14) v1carcgyB0566
Carg06856Cucurbita maxima (Rimu)carcmaB0693