Carg06856-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06856-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_012 : 1445120 .. 1445566 (-)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

mRNA sequence

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Coding sequence (CDS)

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Protein sequence

MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM

Homology

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BLAST of Carg06856-RA vs. NCBI nr
Match: XP_022140128.1 (uncharacterized protein LOC111010862 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 64/126 (50.79%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP STTF +  ++MAA  TAPVAIGTRGTVGSLVK EIDY+AKIE ERC        X
Sbjct: 3   HSKP-STTFCKFLEEMAA--TAPVAIGTRGTVGSLVKKEIDYFAKIEFERCSGNDMASSX 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGICFV------PKMNRISGFGYTILRND 148
           XXXXXXX                        T IC         ++N+ISGF YTIL+ND
Sbjct: 63  XXXXXXXTFWHTVMSWRRKKKRIGNRFI---TKICSAFDVSGSNRLNKISGFNYTILQND 122

[Close]

BLAST of Carg06856-RA vs. NCBI nr
Match: KGN64536.1 (hypothetical protein Csa_1G063600 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 53/128 (41.41%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE           
Sbjct: 3   HNKPTN-TFYKSHYGMAA--IAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGP 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--TGICFV------PKMNRISGFGYTILR 148
                                         R  T +C         +MN+ISG  YTIL+
Sbjct: 63  EMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQ 122

[Close]

BLAST of Carg06856-RA vs. NCBI nr
Match: XP_011648422.1 (PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 44/107 (41.12%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 50  APVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 109
           APVAIGTRGT+GSLVK EIDY+AKIELE                                
Sbjct: 5   APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSLMSW 64

Query: 110 XXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                    R  T +C         +MN+ISG  YTIL+NDFHS HM
Sbjct: 65  RRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Carg06856-RA vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 43/108 (39.81%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE                               
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIMS 63

Query: 109 XXXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                     R  T +C         +MN+ISG  YTIL+NDFHS H+
Sbjct: 64  WRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Carg06856-RA vs. NCBI nr
Match: XP_002518509.2 (uncharacterized protein LOC8284226 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 28 LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERC 80
          +HYKPSS        KMAA  TAPVAIGTRGT+GSLV+ EIDY+ KIELERC
Sbjct: 1  MHYKPSSIA-TNLPAKMAA-ATAPVAIGTRGTIGSLVRKEIDYFTKIELERC 50

[Close]

BLAST of Carg06856-RA vs. TAIR10
Match: AT4G21780.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 17/24 (70.83%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 48 VTAPVAIGTRGTVGSLVKNEIDYY 72
          + AP+AIGTRGT+GSLV+ EIDY+
Sbjct: 1  MAAPIAIGTRGTIGSLVRKEIDYF 24

[Close]

BLAST of Carg06856-RA vs. TrEMBL
Match: tr|A0A0A0LX43|A0A0A0LX43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-11
Identity = 53/128 (41.41%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXX 88
           H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE           
Sbjct: 3   HNKPTN-TFYKSHYGMAA--IAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGP 62

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--TGICFV------PKMNRISGFGYTILR 148
                                         R  T +C         +MN+ISG  YTIL+
Sbjct: 63  EMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQ 122

[Close]

BLAST of Carg06856-RA vs. TrEMBL
Match: tr|A0A1S4DSE9|A0A1S4DSE9_CUCME (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 43/108 (39.81%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE                               
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIMS 63

Query: 109 XXXXXXXXXXR--TGICFV------PKMNRISGFGYTILRNDFHSFHM 149
                     R  T +C         +MN+ISG  YTIL+NDFHS H+
Sbjct: 64  WRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Carg06856-RA vs. TrEMBL
Match: tr|A0A061GHQ5|A0A061GHQ5_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030192 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 45/132 (34.09%), Postives = 55/132 (41.67%), Query Frame = 0


Query: 28  LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXX 87
           + YK S T      +KMAA    PVAIGTRGTVGSL+K EI+Y+ K ELE          
Sbjct: 1   MQYKASFTNTKFFPEKMAA--ATPVAIGTRGTVGSLLKKEIEYFTKFELEGRGSCWKPHG 60

Query: 88  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGICFVPKM------------NRISGFG 147
                                          R G  F+P M            NRI GF 
Sbjct: 61  QVVEMVQMDCRSGHGRQSLWLSITGWKRKKRRGGSGFLPSMCSATEVADKNQLNRIPGFN 120

[Close]

BLAST of Carg06856-RA vs. TrEMBL
Match: tr|B9RXP0|B9RXP0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0905290 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 46 ATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERC 80
          A  TAPVAIGTRGT+GSLV+ EIDY+ KIELERC
Sbjct: 2  AAATAPVAIGTRGTIGSLVRKEIDYFTKIELERC 35

[Close]

BLAST of Carg06856-RA vs. TrEMBL
Match: tr|I1M118|I1M118_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 38/115 (33.04%), Postives = 50/115 (43.48%), Query Frame = 0


Query: 48  VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCXXXXXXXXXXXXXXXXXXXXXXXXXXXX 107
           + APVAIGTRGT+GSLV+ EI+Y+ K ELER                             
Sbjct: 1   MAAPVAIGTRGTIGSLVRKEIEYFTKFELERRASSQKPQQHFVDMDMVSGRSYSISRPSF 60

Query: 108 XXXXXXXXXXXRTGIC-FVPK-------------MNRISGFGYTILRNDFHSFHM 149
                      R G   F+PK             +N+ +GF Y ILRND ++FH+
Sbjct: 61  WELLTTWKRRKRRGTSGFLPKICSVIEVAESHNHLNKTAGFSYRILRNDINNFHL 115

The following BLAST results are available for this feature:

BLAST of Carg06856-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140128.1	1.1e-12	50.79	uncharacterized protein LOC111010862 [Momordica charantia]	[more]
KGN64536.1	1.0e-10	41.41	hypothetical protein Csa_1G063600 [Cucumis sativus]	[more]
XP_011648422.1	2.1e-08	41.12	PREDICTED: uncharacterized protein LOC105434455 [Cucumis sativus]	[more]
XP_016898893.1	2.1e-08	39.81	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]
XP_002518509.2	6.1e-08	69.23	uncharacterized protein LOC8284226 [Ricinus communis]	[more]

BLAST of Carg06856-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21780.1	2.9e-04	70.83	unknown protein	[more]

BLAST of Carg06856-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06856-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LX43\|A0A0A0LX43_CUCSA	6.6e-11	41.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
tr\|A0A1S4DSE9\|A0A1S4DSE9_CUCME	1.4e-08	39.81	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
tr\|A0A061GHQ5\|A0A061GHQ5_THECC	2.2e-06	34.09	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030192 PE=4 SV=1	[more]
tr\|B9RXP0\|B9RXP0_RICCO	4.9e-06	79.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0905290 PE=4 SV=1	[more]
tr\|I1M118\|I1M118_SOYBN	1.1e-05	33.04	Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06856	Carg06856	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06856-RA.CDS.1	Carg06856-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06856-RA.exon.1	Carg06856-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06856-RA	Carg06856-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..105
None	No IPR available	PANTHER	PTHR35131	FAMILY NOT NAMED	coord: 39..147