CmoCh17G002830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G002830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 8
Location	Cmo_Chr17 : 1708862 .. 1709536 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCGTGTAAGTTAGCATTTCTAACCCTAATACTCTGCTATCTCCTTACTCGGTCTGATCTGCATTTCTCTCAGATTCTCACTCTTAGTTTACGGAACCCGACTCAGTGGATTGAAAGGTTTGAAATTTTCGAATTCAGAAACGATCTTTTTTTCTTCTGTTTCTTTAGAATTTTTTTGTTGGAACGAGGGTCAATTCGGTTGTTTGATCAGGAGTCAGTTTACTTTTATGCCATGATTTGTATGCAAAATTATCTCTATTATGTTGTTCGCGATGATATCACGCTAAATTATCTCTATTATGTTGTTTTTTTTTTTTTTTTGGAATTAGGAATTGATCGAATTAGAGATGGCGAGCGCAGTAGATGCTGCTGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTGTAAGCGAATATCATTTTGTTATTTTCTTAGCCGAAGTATGGATTCGACATTATTCATCTGGTCTGGTTTCCATGGTTGCTTGTTGTCCTTCGGATTGCTCCTGAAAATTGCTATAGTTATCATATGATCGTCTTCTGA

mRNA sequence

TCCCGTGTAAGTTAGCATTTCTAACCCTAATACTCTGCTATCTCCTTACTCGGTCTGATCTGCATTTCTCTCAGATTCTCACTCTTAGTTTACGGAACCCGACTCAGTGGATTGAAAGGAATTGATCGAATTAGAGATGGCGAGCGCAGTAGATGCTGCTGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTTTATCATATGATCGTCTTCTGA

Coding sequence (CDS)

ATGGCGAGCGCAGTAGATGCTGCTGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTTTATCATATGATCGTCTTCTGA

Homology

[Close]

BLAST of CmoCh17G002830 vs. Swiss-Prot
Match: NDA8B_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.3e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCLDKG+ VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of CmoCh17G002830 vs. Swiss-Prot
Match: NDA8A_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana GN=At3g06310 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-17
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCL+KG+ VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of CmoCh17G002830 vs. TrEMBL
Match: A0A0A0LY30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538810 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. TrEMBL
Match: A0A103XIP0_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006519 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-21
Identity = 51/63 (80.95%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MAS+VD AG+PIPTSAVLMS+SKHIA+ CR ENVA+L+CK++DPNPEKCLDKG+QVTRCV
Sbjct: 1  MASSVDTAGEPIPTSAVLMSASKHIASRCRGENVAFLKCKKEDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. TrEMBL
Match: M5XT71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013741mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-21
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVL ++SKHI   C++ENVA+L+CK+KDPNPEKCLDKG+QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLTAASKHIQFQCQAENVAFLKCKKKDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. TrEMBL
Match: W9RRZ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011279 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-21
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDA+G+PIPTSAVLM+SSKHIA  C+SENV +L+CK++DPNPEKCLDKGQQVTRCV
Sbjct: 1  MASAVDASGEPIPTSAVLMASSKHIALRCQSENVEFLKCKKQDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of CmoCh17G002830 vs. TrEMBL
Match: W1PT74_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00164p00050110 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-21
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDA G+PIPTSAVLM++SKHIA  CR+EN  +L CKRKDPNPEKCLDKGQ+VTRCV
Sbjct: 1  MASAVDAVGEPIPTSAVLMAASKHIARKCRAENRDFLNCKRKDPNPEKCLDKGQEVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. TAIR10
Match: AT5G18800.1 (AT5G18800.1 Cox19-like CHCH family protein)

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCLDKG+ VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of CmoCh17G002830 vs. TAIR10
Match: AT3G06310.1 (AT3G06310.1 Cox19-like CHCH family protein)

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-19
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCL+KG+ VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of CmoCh17G002830 vs. NCBI nr
Match: gi|449435544|ref|XP_004135555.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. NCBI nr
Match: gi|976903651|gb|KVH91458.1| (CHCH-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 51/63 (80.95%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MAS+VD AG+PIPTSAVLMS+SKHIA+ CR ENVA+L+CK++DPNPEKCLDKG+QVTRCV
Sbjct: 1  MASSVDTAGEPIPTSAVLMSASKHIASRCRGENVAFLKCKKEDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. NCBI nr
Match: gi|703134560|ref|XP_010105668.1| (hypothetical protein L484_011279 [Morus notabilis])

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDA+G+PIPTSAVLM+SSKHIA  C+SENV +L+CK++DPNPEKCLDKGQQVTRCV
Sbjct: 1  MASAVDASGEPIPTSAVLMASSKHIALRCQSENVEFLKCKKQDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of CmoCh17G002830 vs. NCBI nr
Match: gi|596195955|ref|XP_007223574.1| (hypothetical protein PRUPE_ppa013741mg [Prunus persica])

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVL ++SKHI   C++ENVA+L+CK+KDPNPEKCLDKG+QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLTAASKHIQFQCQAENVAFLKCKKKDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of CmoCh17G002830 vs. NCBI nr
Match: gi|586723371|ref|XP_006849335.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-21
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
          MASAVDA G+PIPTSAVLM++SKHIA  CR+EN  +L CKRKDPNPEKCLDKGQ+VTRCV
Sbjct: 1  MASAVDAVGEPIPTSAVLMAASKHIARKCRAENRDFLNCKRKDPNPEKCLDKGQEVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

The following BLAST results are available for this feature:

BLAST of CmoCh17G002830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDA8B_ARATH	8.3e-20	71.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
NDA8A_ARATH	1.7e-17	65.57	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of CmoCh17G002830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY30_CUCSA	1.7e-24	93.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538810 PE=4 SV=1	[more]
A0A103XIP0_CYNCS	1.0e-21	80.95	CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006519 PE=4 SV=1	[more]
M5XT71_PRUPE	4.0e-21	80.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013741mg PE=4 SV=1	[more]
W9RRZ0_9ROSA	4.0e-21	80.95	Uncharacterized protein OS=Morus notabilis GN=L484_011279 PE=4 SV=1	[more]
W1PT74_AMBTC	5.2e-21	80.95	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00164p00050110 PE=4 SV=...	[more]

BLAST of CmoCh17G002830 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18800.1	4.7e-21	71.43	Cox19-like CHCH family protein	[more]
AT3G06310.1	9.7e-19	65.57	Cox19-like CHCH family protein	[more]

BLAST of CmoCh17G002830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435544\|ref\|XP_004135555.1\|	2.5e-24	93.65	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|976903651\|gb\|KVH91458.1\|	1.5e-21	80.95	CHCH-like protein [Cynara cardunculus var. scolymus]	[more]
gi\|703134560\|ref\|XP_010105668.1\|	5.7e-21	80.95	hypothetical protein L484_011279 [Morus notabilis]	[more]
gi\|596195955\|ref\|XP_007223574.1\|	5.7e-21	80.95	hypothetical protein PRUPE_ppa013741mg [Prunus persica]	[more]
gi\|586723371\|ref\|XP_006849335.1\|	7.5e-21	80.95	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002830.1	CmoCh17G002830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..64 score: 6.6
None	No IPR available	PANTHER	PTHR13344:SF0	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 8	coord: 1..64 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G002830	CmaCh08G011950	Cucurbita maxima (Rimu)	cmacmoB887
CmoCh17G002830	Cla009349	Watermelon (97103) v1	cmowmB353
CmoCh17G002830	MELO3C021376	Melon (DHL92) v3.5.1	cmomeB306
CmoCh17G002830	ClCG06G005540	Watermelon (Charleston Gray)	cmowcgB325
CmoCh17G002830	Cp4.1LG12g02520	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G002830	Cp4.1LG17g01000	Cucurbita pepo (Zucchini)	cmocpeB351
CmoCh17G002830	Cla97C06G115050	Watermelon (97103) v2	cmowmbB361
CmoCh17G002830	Carg05477	Silver-seed gourd	carcmoB0097
CmoCh17G002830	Carg15950	Silver-seed gourd	carcmoB0446

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G002830	CmoCh08G011680	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G002830	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh17G002830	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh17G002830	Cucumber (Gy14) v1	cgycmoB0707
CmoCh17G002830	Cucumber (Gy14) v1	cgycmoB1000
CmoCh17G002830	Cucurbita maxima (Rimu)	cmacmoB251
CmoCh17G002830	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G002830	Cucurbita maxima (Rimu)	cmacmoB810
CmoCh17G002830	Wild cucumber (PI 183967)	cmocpiB352
CmoCh17G002830	Wild cucumber (PI 183967)	cmocpiB363
CmoCh17G002830	Cucumber (Chinese Long) v2	cmocuB345
CmoCh17G002830	Cucumber (Chinese Long) v2	cmocuB360
CmoCh17G002830	Melon (DHL92) v3.5.1	cmomeB335
CmoCh17G002830	Watermelon (Charleston Gray)	cmowcgB316
CmoCh17G002830	Watermelon (97103) v1	cmowmB341
CmoCh17G002830	Cucurbita pepo (Zucchini)	cmocpeB365
CmoCh17G002830	Cucurbita pepo (Zucchini)	cmocpeB373
CmoCh17G002830	Bottle gourd (USVL1VR-Ls)	cmolsiB320
CmoCh17G002830	Bottle gourd (USVL1VR-Ls)	cmolsiB342
CmoCh17G002830	Cucumber (Gy14) v2	cgybcmoB317
CmoCh17G002830	Cucumber (Gy14) v2	cgybcmoB736
CmoCh17G002830	Melon (DHL92) v3.6.1	cmomedB351
CmoCh17G002830	Melon (DHL92) v3.6.1	cmomedB385
CmoCh17G002830	Silver-seed gourd	carcmoB0824
CmoCh17G002830	Silver-seed gourd	carcmoB1124
CmoCh17G002830	Cucumber (Chinese Long) v3	cmocucB0420
CmoCh17G002830	Cucumber (Chinese Long) v3	cmocucB0435
CmoCh17G002830	Watermelon (97103) v2	cmowmbB351
CmoCh17G002830	Wax gourd	cmowgoB0461
CmoCh17G002830	Wax gourd	cmowgoB0472