Carg05477 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05477
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase 1 alpha subcomplex subunit 8
Location	Cucurbita_argyrosperma_scaffold_046 : 625031 .. 629555 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATTACAACTTTGTCTTCCTGTCGTTCCCGTGCAAGTTAGCATTTCTAACCCTAATACTCTGCTATCTCCTTACTCGGTCTGATCTGCGTTTCTCTCAGATTCTCACTCTTAGTTTACGGAACCCGACTCAGTGGATTGAAAGGTTTGAAAATTTCAAATTCAGAAACGATCTTTTTTTCTTCTGTTTCTTTAGAATTTTTTTTTTTTTTTTTGTTGGAACGAGGGTCAATTCGTTTGTTTGATCAGGAGTCGGTTTACTTTATGCCATGATTTGTATGCAAATTTTTGTTCGCGATGATATCACGCTAAATTATCTCTATTATGTTTTTTTTTTTTTTTTTTTTTGAATTAGGAATTGATCGAATTGGAGATGGCGAGCGCAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTGTAAGCGAATATCATTTTGTTATTTTCTTAGCCGAAGTATGGATTCGACATTATTCATCTGGTCTGGTTTCCATGGTTGCTTGTTGTCCTTCGGATTGCTCCTGAAAATTGCTATAGTTATCATATGATCGTCTTCTGATCTGCGAGCAAATATGAGATTAAGAAATGCGTTTCTTCAGTAACCATACGATCGTCTTCCGTTCCGCTGGCAAATAGTGTAAAAGGAAACTTGAAAAAAAGTAATGGGTATTTCATAGGGTTGACATAAAATATTAGTACAGGTAGTGATAAAATCTTAGGTTGATAATCTTGTATCTGACTAAATCGATAGTGTGCATGGTCTCCGTTTGAGGTCACCCGTTGACATCTCAGCCCCATAAGCTCAGGTGCACGATGGAAATAATACACTGTGGAGGTCTTCCACCTTTACAAGGCACGGTGGAAATAATGGATTTGGCGGTGGAGTTGGGCTGCAGAGTGTATAATCTTCCCATAAATTACCTTGGTTTTTCACTCGGTGGTAACCATCGCTCCTTCTCTTTTTTGGGAATTGTTAGTTGACAAGTTCAAAGCAAAGATTGCCAAGTGGAAAGGCTCCTTGCTTTCAGGGGATGCCTAACCTTGATACATTTCGTGCATGATGGGCTGCCACTGTATTATTATTTTTTCTCTCCTCAAAGCTCTGCTAGGTAATATCAATAGTATGGAGAGTGGGCCAGAGATTGTTTTTTGGAGTGATGGTGATTACAAGGCCGGTAGCCATTTGGTTAGGTGGAAGATCACCTCTCTCCCCCTTTGCAACGGTGGTTTGGGGATAGGGTCTCTTAGAAACAAAATTCTTGCTCATCTCTCCAAATGGCTATGGAGATTCTCAACAAAGACAAAGGCCTATAGAGGAAAGTGGTATAGGAGATGGAGATCGAAATAGGAGGCGGGGAAGGCTTCCCCGTCCCCGTCCCGTCTCGCCCCATGGTCATCTCTATCTTATATTGTTCTAGATACTAATGTTTTAGATATTGTTGATAACAACAAGTGGTTGGTCCATTCTTTGAGTGATTTTTCTCGTAAATCCTTCTTTCGTTGCCTATTGGACCCTTCTCCCGTTAGTGAGTATGTCTTTTGTACTCTTCGGAGGAAAATATTCTAAAGAAGGTTATGTTATTTTTTACACGGACGAGCTAACACTCTGGATTGACTTTCAAGGAGGTTTTACTCTTTAGTTGGCTTGTTTTGTTGCATTCTCTATCAGAAGGTGGAGGATGACCTGGATCATATTCTTTAGAGATATGAGATTGTGAGATCCATTTGGAGTTGCTTCTTCCAAACTTTGGTTTCATGCTCGCATGTCATAGGGATACTAGTGATAGGATCGGGGAGTTCCTCCTTCCTCTGCCTTTTCGTGAAAATGGTCGGTTTTTATGGCTTGTCAGAGTGTGTGCTATTTTTTGAGATCTTTGGGGTGAGAAATAATAGAGGGTTTAGAGGTATGGAGATGGATCGTTCGGATGATTGATCCCTCGTGAGTCTTCATGTTTCTCTTTAGGCTTTGATTTCGAAGATCTTTTGTAATTATTCTATAGCTTTTATTTTGCACAAACGGAGACCTTTCTTTTCGAGGTATTATCTTTTTATATGTCCTTGTATTCTTTCATTCACTCTCAATGAAAGTTGTTTCATACAAAAAAAAAGTTCTATTTTACGATGAAAGATTATCTAAATTTTGAGATAATTGTATAATTTCTGTTTATGATGTTAATTCAAGGATACACCGATGGAAATCTTGTGGCCTAGTAATAGGTGGCCTGAATAGATTAAGCTAACTTCTATCTAAAGAATTAGCTTGTTTAATCAAGATCATTTCGTGGACCACGAGAGGATTACATGCCTTTCTTCCTAATGCATGCCAAAATTTGCCACGAGATTTAGAAGAAAATGTTAATTTCCTTTGGGGGGAAGAATGTAGTTTTGGCAACTAGCTCCCCTTTTTTATGGGTTTTGAATTCTAATGATGGCTTGGGTTCGATGGATTGAGTTATAAGATTATGGCCATTCTTGACTGTTTTTTTCGTTCTTTGGGAAAAAAAAGTGGTGGCCAGCATTCCGGGTTTTCATCTCTTTAATGGCATTTGACTTGTTTTCCTTGTATGACAAAAGAACGAATGAATGTCACAACTCTTCTATCTTTGATAAGGGAGTCTGATTATAGGACTGGGATGATGGATATGCATATTTGGAGCTCTAACCCTCGTGGTGGCTTCTCCTGTGGCCCCTTTTTTTGTTGTTAATTGGACCCCTCCCCTGCTAGAGATTTTGTGTGCTCGACTCTCTAGAAGATCAAGATTTCAAAGAAAGTTAAGTTTTTTATTTGATAGGTTATCTTTGATCGAGTTATCACTCTAGATCGATTCTTGAGAAAGTGGCCTTCGTTTATTGACCCGTTTTGTTGTGTCCTCTGTCAGAAGGTGGAGGGCACACCCAAGGGCGCATAGAGTATGGTAGTACCTTGATAATATTTTTTTAGAGATGTGACTTCGTGCACTTGATGTAGAGTTATCTTTTGGAGGCGTTCGACTTTCAGTTAGACCACCATAGAGACCCAAATGAGATTATTAGAGACCCAAATGAGATTATTGAGGAGTTTCTTCTCCATCCACCTTTTAGGAAGAGAGGTGATATTAGCTTAATCTAGAATTACAAAAAAAAAAACTTCAACTGAACCATCGTTTGTGGTTCATTAAATGGTTACATATTTGAATACTAATAGTTTATAGTAATGATAGGATCTTCGACCAGTTGTATGGCGAGGTTTGATGAGGTTTTGGAATGGGATCATCAAAATTTGTCGGGCTTGTTTTTTTGTATGTCCTTGCAATTCTTTCATTTTTTCTCTATGGAAGTTCGGTTTCTTGTTAAAAAAAAAAATCTGGGTCCTAGACGGATTGTACTGCAGCATGGATTTTGCATTATATTGATTTTGATATCTATGAAGTAGTACATCCACTATATTTTTAATTGGATAATTAGAAATATGACATTTCATTAGATAAATGATGTACACAACGAGGGTGGAGAGCCAACCCCAGAGTCAATGGGGCAGTCCAATTAGCTAAAATTTCATAAAATAGTAGATGAATGTTGGAAGGTATAATCGTAAACTAAGATTATTGGCATGATCAGCTGTAAATCCCTAAACTGATCTATAATGTACAGAAATTTCAATATAAAATACCCAGATCTATCTATTTTTTTTCTTTTTGAGTTCCCAGATATATTGGATTGCAAATTATTGTTTCAATAATGCTACTTTAGATTTGTTTCAATGATAGTTTATTAAGAGAAAAAAAAAAAAAAAAAAAAAAGGAACAGTATCCATTTTTCTTTAGTTGGTCGATATTCTGTAATCTTTGACTCTGACTGATCTTTACTTTCTCGTCTTTTGCAATTTTGTCATTTTCTTTAACACTTTTTTTGTCACTTTTTAGTTGGATATTTTGTGAGTGAGACATCTTTTGTTTGTATTCTCTCACTTGCCGCACCAATCTTATCAGTTTCAAATTTGACAGCCATACTTGTTGAAATAACTCACCTAGATACAGAAAGATCACGTTTTGGTAGGTTGTGAGATTTAATGTCTCCCGGTGGAGTTTGTAACTCTGTGTCCTTTTACAATATAATCTTGGTTTGGTTATGTTGGATTGGAGTTCTTTTAAGTAGTTTTCGGGTCTCCTTTTTTTGAATGCGCGTATATTCTTTTATATTGTTCAACGAAAACTCGGTTTCGTAATAAAATTATAAAGCAATGAACCTAGAGGCTGCTTCTCCTCCTTGCAGGCTTAAAGATCTTCATCAAAGGTGCACGAAAGATATGGATGCTTACGTCGGTTGCATGTACTACAATACGAATGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGCATGTCCCTTGGAATGA

mRNA sequence

CATATTACAACTTTGTCTTCCTGTCGTTCCCGTGCAAGTTAGCATTTCTAACCCTAATACTCTGCTATCTCCTTACTCGGTCTGATCTGCGTTTCTCTCAGATTCTCACTCTTAGTTTACGGAACCCGACTCAGTGGATTGAAAGGAATTGATCGAATTGGAGATGGCGAGCGCAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTGCTTAAAGATCTTCATCAAAGGTGCACGAAAGATATGGATGCTTACGTCGGTTGCATGTACTACAATACGAATGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGCATGTCCCTTGGAATGA

Coding sequence (CDS)

ATGGCGAGCGCAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTGCTTAAAGATCTTCATCAAAGGTGCACGAAAGATATGGATGCTTACGTCGGTTGCATGTACTACAATACGAATGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGCATGTCCCTTGGAATGA

Protein sequence

MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE

Homology

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BLAST of Carg05477 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 4.8e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg05477 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 4.0e-54
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg05477 vs. NCBI nr
Match: XP_022138355.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 4.9e-52
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg05477 vs. NCBI nr
Match: XP_004135555.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_1G538810 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 9.3e-51
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYY+TNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg05477 vs. NCBI nr
Match: XP_018826018.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Juglans regia])

HSP 1 Score: 197.6 bits (501), Expect = 2.1e-47
Identity = 90/106 (84.91%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASA+DA+GDPIPTSAVL SSSKHI+  C++ENVA+L+CK++DPNPEKCLDKG QVTRCV
Sbjct: 1   MASAIDASGDPIPTSAVLTSSSKHISLRCQAENVAFLKCKKQDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQ+AFEKACPLE
Sbjct: 61  LGLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQQAFEKACPLE 106

[Close]

BLAST of Carg05477 vs. TAIR10
Match: AT5G18800.1 (Cox19-like CHCH family protein)

HSP 1 Score: 177.9 bits (450), Expect = 3.2e-45
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           M+SAVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCLDKG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ+C K+MD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of Carg05477 vs. TAIR10
Match: AT3G06310.1 (Cox19-like CHCH family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.7e-43
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 3   SAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLS 62
           +AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCL+KG+ VTRCVL 
Sbjct: 5   AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63  LLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LLKDLHQRC K+MDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 65  LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

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BLAST of Carg05477 vs. Swiss-Prot
Match: sp|Q8LGE7|NDA8B_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-44
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           M+SAVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCLDKG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ+C K+MD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of Carg05477 vs. Swiss-Prot
Match: sp|Q9SQT4|NDA8A_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-42
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 3   SAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLS 62
           +AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCL+KG+ VTRCVL 
Sbjct: 5   AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63  LLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LLKDLHQRC K+MDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 65  LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of Carg05477 vs. TrEMBL
Match: tr|A0A1S3BBD5|A0A1S3BBD5_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo OX=3656 GN=LOC103488226 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYY+TNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg05477 vs. TrEMBL
Match: tr|A0A0A0LY30|A0A0A0LY30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYY+TNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg05477 vs. TrEMBL
Match: tr|A0A2I4F308|A0A2I4F308_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Juglans regia OX=51240 GN=LOC108995013 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 90/106 (84.91%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASA+DA+GDPIPTSAVL SSSKHI+  C++ENVA+L+CK++DPNPEKCLDKG QVTRCV
Sbjct: 1   MASAIDASGDPIPTSAVLTSSSKHISLRCQAENVAFLKCKKQDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQ+AFEKACPLE
Sbjct: 61  LGLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQQAFEKACPLE 106

[Close]

BLAST of Carg05477 vs. TrEMBL
Match: tr|A0A2P5FX64|A0A2P5FX64_9ROSA (CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_021530 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.2e-47
Identity = 90/106 (84.91%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVD+AGDPIPTSAVLM+SSK I+  C++ENVA+L+CK+KDPNPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDSAGDPIPTSAVLMASSKQISVKCQAENVAFLKCKKKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LL+DLHQRCTK+MDAYVGCMYY+TNEFDLCRKEQ+AFEKACPLE
Sbjct: 61  LGLLRDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQQAFEKACPLE 106

[Close]

BLAST of Carg05477 vs. TrEMBL
Match: tr|A0A2I4G9J1|A0A2I4G9J1_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Juglans regia OX=51240 GN=LOC109005935 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.4e-47
Identity = 90/106 (84.91%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60
           MASAVDAAGDPIPTSAVL +SSKHIA  C++ENVA+L+CK++DPNPEKCLDKG+QVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLTASSKHIAVRCQAENVAFLKCKKQDPNPEKCLDKGRQVTRCV 60

Query: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ CTK+MDAYVGC+YY+TNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LGLLKDLHQNCTKEMDAYVGCLYYHTNEFDLCRKEQEAFEKACPLE 106

The following BLAST results are available for this feature:

BLAST of Carg05477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958837.1	4.8e-55	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022930219.1	4.0e-54	98.11	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022138355.1	4.9e-52	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charan...	[more]
XP_004135555.1	9.3e-51	93.40	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucum...	[more]
XP_018826018.1	2.1e-47	84.91	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [...	[more]

BLAST of Carg05477 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18800.1	3.2e-45	76.42	Cox19-like CHCH family protein	[more]
AT3G06310.1	1.7e-43	74.04	Cox19-like CHCH family protein	[more]

BLAST of Carg05477 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LGE7\|NDA8B_ARATH	5.7e-44	76.42	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
sp\|Q9SQT4\|NDA8A_ARATH	3.2e-42	74.04	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of Carg05477 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBD5\|A0A1S3BBD5_CUCME	6.1e-51	93.40	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo O...	[more]
tr\|A0A0A0LY30\|A0A0A0LY30_CUCSA	6.1e-51	93.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=4 SV=1	[more]
tr\|A0A2I4F308\|A0A2I4F308_9ROSI	1.4e-47	84.91	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Juglans r...	[more]
tr\|A0A2P5FX64\|A0A2P5FX64_9ROSA	3.2e-47	84.91	CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_021530 PE=4 SV=1	[more]
tr\|A0A2I4G9J1\|A0A2I4G9J1_9ROSI	5.4e-47	84.91	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Juglans regia ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05477-RA	Carg05477-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 71..104 e-value: 8.2E-10 score: 38.5
None	No IPR available	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..106
None	No IPR available	PANTHER	PTHR13344:SF2	NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 8-A-RELATED	coord: 1..106
None	No IPR available	PROSITE	PS51808	CHCH	coord: 68..106 score: 13.237
None	No IPR available	PROSITE	PS51808	CHCH	coord: 26..67 score: 11.209

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05477	Cla009349	Watermelon (97103) v1	carwmB0073
Carg05477	MELO3C021376	Melon (DHL92) v3.5.1	carmeB0067
Carg05477	ClCG06G005540	Watermelon (Charleston Gray)	carwcgB0073
Carg05477	CmaCh08G011950	Cucurbita maxima (Rimu)	carcmaB0096
Carg05477	CmoCh08G011680	Cucurbita moschata (Rifu)	carcmoB0104
Carg05477	CmoCh17G002830	Cucurbita moschata (Rifu)	carcmoB0097
Carg05477	Cp4.1LG17g01000	Cucurbita pepo (Zucchini)	carcpeB0104
Carg05477	Cp4.1LG12g02520	Cucurbita pepo (Zucchini)	carcpeB0099
Carg05477	Cla97C06G115050	Watermelon (97103) v2	carwmbB0070

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05477	Carg15950	Silver-seed gourd	carcarB080

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05477	Watermelon (97103) v2	carwmbB0069
Carg05477	Wax gourd	carwgoB0083
Carg05477	Wax gourd	carwgoB0086
Carg05477	Silver-seed gourd	carcarB083
Carg05477	Silver-seed gourd	carcarB087
Carg05477	Cucumber (Gy14) v2	carcgybB0071
Carg05477	Cucumber (Gy14) v2	carcgybB0075
Carg05477	Cucumber (Gy14) v1	carcgyB0083
Carg05477	Cucumber (Gy14) v1	carcgyB0085
Carg05477	Cucurbita maxima (Rimu)	carcmaB0090
Carg05477	Cucurbita maxima (Rimu)	carcmaB0091
Carg05477	Cucurbita maxima (Rimu)	carcmaB0094
Carg05477	Cucurbita moschata (Rifu)	carcmoB0096
Carg05477	Cucurbita moschata (Rifu)	carcmoB0102
Carg05477	Cucurbita pepo (Zucchini)	carcpeB0106
Carg05477	Cucurbita pepo (Zucchini)	carcpeB0109
Carg05477	Wild cucumber (PI 183967)	carcpiB0074
Carg05477	Wild cucumber (PI 183967)	carcpiB0078
Carg05477	Wild cucumber (PI 183967)	carcpiB0084
Carg05477	Cucumber (Chinese Long) v2	carcuB0071
Carg05477	Cucumber (Chinese Long) v2	carcuB0074
Carg05477	Cucumber (Chinese Long) v2	carcuB0080
Carg05477	Cucumber (Chinese Long) v3	carcucB0078
Carg05477	Cucumber (Chinese Long) v3	carcucB0082
Carg05477	Bottle gourd (USVL1VR-Ls)	carlsiB061
Carg05477	Bottle gourd (USVL1VR-Ls)	carlsiB065
Carg05477	Melon (DHL92) v3.5.1	carmeB0073
Carg05477	Melon (DHL92) v3.6.1	carmedB0068
Carg05477	Melon (DHL92) v3.6.1	carmedB0074
Carg05477	Watermelon (Charleston Gray)	carwcgB0072
Carg05477	Watermelon (97103) v1	carwmB0070