MELO3C021376 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021376
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
Location	chr11 : 27061041 .. 27061232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGCAGTAGATGCCGTAGGAGATCCAATTCCTACATCGGCGGTGCTAATTTCTTCCTCAAAGCACATTGCGAACGATTGTCTGTCGGAGAACGTGGCATACCTTCAGTGCAGACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCAATCGATGCGTTCTCTCCCTGTAA

mRNA sequence

ATGGCAAGCGCAGTAGATGCCGTAGGAGATCCAATTCCTACATCGGCGGTGCTAATTTCTTCCTCAAAGCACATTGCGAACGATTGTCTGTCGGAGAACGTGGCATACCTTCAGTGCAGACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCAATCGATGCGTTCTCTCCCTGTAA

Coding sequence (CDS)

ATGGCAAGCGCAGTAGATGCCGTAGGAGATCCAATTCCTACATCGGCGGTGCTAATTTCTTCCTCAAAGCACATTGCGAACGATTGTCTGTCGGAGAACGTGGCATACCTTCAGTGCAGACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCAATCGATGCGTTCTCTCCCTGTAA

Protein sequence

MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCVLSL*

Homology

[Close]

BLAST of MELO3C021376 vs. Swiss-Prot
Match: NDA8B_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-19
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI   C+ ENVA+L+C++ DPNPEKCLDKG  V RCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C021376 vs. Swiss-Prot
Match: NDA8A_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana GN=At3g06310 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-17
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 3  SAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI   C+ EN+A+L+C++ DPNPEKCL+KG  V RCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C021376 vs. TrEMBL
Match: A0A0A0LY30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538810 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-23
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA GDPIPTSAVL+SSSKHIA  C SENVAYLQC++KDPNPEKCLDKGHQV RCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. TrEMBL
Match: M5XT71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013741mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.0e-20
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA GDPIPTSAVL ++SKHI   C +ENVA+L+C++KDPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDAAGDPIPTSAVLTAASKHIQFQCQAENVAFLKCKKKDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. TrEMBL
Match: A0A124SBQ3_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006593 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDAVG+PIPTSAVL+S+SKHIA  C  EN+A+L+C++ DPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDAVGEPIPTSAVLMSASKHIAGRCRGENIAFLKCKKDDPNPEKCLDKGSQVIRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. TrEMBL
Match: A0A103XIP0_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006519 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-19
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MAS+VD  G+PIPTSAVL+S+SKHIA+ C  ENVA+L+C+++DPNPEKCLDKG QV RCV
Sbjct: 1  MASSVDTAGEPIPTSAVLMSASKHIASRCRGENVAFLKCKKEDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. TrEMBL
Match: A0A067KV02_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02044 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-19
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA G+PIPTSAVL++SS+HI   C  ENVA+L+C++KDPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDATGNPIPTSAVLMASSRHIGTRCYEENVAFLKCKKKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C021376 vs. TAIR10
Match: AT5G18800.1 (AT5G18800.1 Cox19-like CHCH family protein)

HSP 1 Score: 96.3 bits (238), Expect = 7.4e-21
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI   C+ ENVA+L+C++ DPNPEKCLDKG  V RCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C021376 vs. TAIR10
Match: AT3G06310.1 (AT3G06310.1 Cox19-like CHCH family protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-18
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 3  SAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI   C+ EN+A+L+C++ DPNPEKCL+KG  V RCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C021376 vs. NCBI nr
Match: gi|449435544|ref|XP_004135555.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-23
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA GDPIPTSAVL+SSSKHIA  C SENVAYLQC++KDPNPEKCLDKGHQV RCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. NCBI nr
Match: gi|596195955|ref|XP_007223574.1| (hypothetical protein PRUPE_ppa013741mg [Prunus persica])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA GDPIPTSAVL ++SKHI   C +ENVA+L+C++KDPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDAAGDPIPTSAVLTAASKHIQFQCQAENVAFLKCKKKDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. NCBI nr
Match: gi|976903510|gb|KVH91387.1| (CHCH-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDAVG+PIPTSAVL+S+SKHIA  C  EN+A+L+C++ DPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDAVGEPIPTSAVLMSASKHIAGRCRGENIAFLKCKKDDPNPEKCLDKGSQVIRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. NCBI nr
Match: gi|976903651|gb|KVH91458.1| (CHCH-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MAS+VD  G+PIPTSAVL+S+SKHIA+ C  ENVA+L+C+++DPNPEKCLDKG QV RCV
Sbjct: 1  MASSVDTAGEPIPTSAVLMSASKHIASRCRGENVAFLKCKKEDPNPEKCLDKGRQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C021376 vs. NCBI nr
Match: gi|643733099|gb|KDP40046.1| (hypothetical protein JCGZ_02044 [Jatropha curcas])

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-19
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MASAVDAVGDPIPTSAVLISSSKHIANDCLSENVAYLQCRRKDPNPEKCLDKGHQVNRCV 60
          MASAVDA G+PIPTSAVL++SS+HI   C  ENVA+L+C++KDPNPEKCLDKG QV RCV
Sbjct: 1  MASAVDATGNPIPTSAVLMASSRHIGTRCYEENVAFLKCKKKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

The following BLAST results are available for this feature:

BLAST of MELO3C021376 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDA8B_ARATH	1.3e-19	68.25	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
NDA8A_ARATH	3.6e-17	62.30	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of MELO3C021376 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY30_CUCSA	2.3e-23	87.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538810 PE=4 SV=1	[more]
M5XT71_PRUPE	7.0e-20	76.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013741mg PE=4 SV=1	[more]
A0A124SBQ3_CYNCS	9.1e-20	76.19	CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006593 PE=4 SV=1	[more]
A0A103XIP0_CYNCS	2.0e-19	73.02	CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006519 PE=4 SV=1	[more]
A0A067KV02_JATCU	2.6e-19	73.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02044 PE=4 SV=1	[more]

BLAST of MELO3C021376 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18800.1	7.4e-21	68.25	Cox19-like CHCH family protein	[more]
AT3G06310.1	2.0e-18	62.30	Cox19-like CHCH family protein	[more]

BLAST of MELO3C021376 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435544\|ref\|XP_004135555.1\|	3.3e-23	87.30	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|596195955\|ref\|XP_007223574.1\|	1.0e-19	76.19	hypothetical protein PRUPE_ppa013741mg [Prunus persica]	[more]
gi\|976903510\|gb\|KVH91387.1\|	1.3e-19	76.19	CHCH-like protein [Cynara cardunculus var. scolymus]	[more]
gi\|976903651\|gb\|KVH91458.1\|	2.9e-19	73.02	CHCH-like protein [Cynara cardunculus var. scolymus]	[more]
gi\|643733099\|gb\|KDP40046.1\|	3.8e-19	73.02	hypothetical protein JCGZ_02044 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021376T1	MELO3C021376T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..63 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021376	CmaCh08G011950	Cucurbita maxima (Rimu)	cmameB816
MELO3C021376	CmoCh17G002830	Cucurbita moschata (Rifu)	cmomeB306
MELO3C021376	CmoCh08G011680	Cucurbita moschata (Rifu)	cmomeB800
MELO3C021376	Cp4.1LG12g02520	Cucurbita pepo (Zucchini)	cpemeB112
MELO3C021376	Cp4.1LG17g01000	Cucurbita pepo (Zucchini)	cpemeB289
MELO3C021376	Carg05477	Silver-seed gourd	carmeB0067
MELO3C021376	Carg15950	Silver-seed gourd	carmeB0327

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021376	Melon (DHL92) v3.5.1	memeB051
MELO3C021376	Cucumber (Gy14) v1	cgymeB430
MELO3C021376	Cucumber (Gy14) v1	cgymeB587
MELO3C021376	Cucurbita maxima (Rimu)	cmameB215
MELO3C021376	Cucurbita maxima (Rimu)	cmameB313
MELO3C021376	Cucurbita maxima (Rimu)	cmameB747
MELO3C021376	Cucurbita moschata (Rifu)	cmomeB200
MELO3C021376	Cucurbita moschata (Rifu)	cmomeB738
MELO3C021376	Wild cucumber (PI 183967)	cpimeB174
MELO3C021376	Wild cucumber (PI 183967)	cpimeB421
MELO3C021376	Cucumber (Chinese Long) v2	cumeB180
MELO3C021376	Cucumber (Chinese Long) v2	cumeB427
MELO3C021376	Watermelon (Charleston Gray)	mewcgB121
MELO3C021376	Watermelon (Charleston Gray)	mewcgB124
MELO3C021376	Watermelon (97103) v1	mewmB096
MELO3C021376	Watermelon (97103) v1	mewmB141
MELO3C021376	Cucurbita pepo (Zucchini)	cpemeB555
MELO3C021376	Cucurbita pepo (Zucchini)	cpemeB793
MELO3C021376	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C021376	Bottle gourd (USVL1VR-Ls)	lsimeB342
MELO3C021376	Cucumber (Gy14) v2	cgybmeB149
MELO3C021376	Cucumber (Gy14) v2	cgybmeB369
MELO3C021376	Silver-seed gourd	carmeB0609
MELO3C021376	Silver-seed gourd	carmeB0827
MELO3C021376	Cucumber (Chinese Long) v3	cucmeB176
MELO3C021376	Cucumber (Chinese Long) v3	cucmeB433
MELO3C021376	Watermelon (97103) v2	mewmbB123
MELO3C021376	Watermelon (97103) v2	mewmbB128
MELO3C021376	Wax gourd	mewgoB100
MELO3C021376	Wax gourd	mewgoB105