Cla97C06G115050 (gene) Watermelon (97103) v2

Overview
NameCla97C06G115050
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
LocationCla97Chr06 : 5978688 .. 5978894 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAAGCGAATAA

mRNA sequence

ATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAAGCGAATAA

Coding sequence (CDS)

ATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAAGCGAATAA

Protein sequence

MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVAVAYPPLQTQGFQPGEMPPQRPSSHSMRPLPVSE
Homology
[Close]
BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_004135555.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_1G538810 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIA KCRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_022138355.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAG+PIPTSAV+MSS+KHIAN CRSENVA
Sbjct: 1  MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. NCBI nr
Match: PSS01472.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B like [Actinidia chinensis var. chinensis])

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDA GDPIPTSAV+M+S+KHIA KC+ ENVA
Sbjct: 1  MASAVDAVGDPIPTSAVLMASAKHIATKCKGENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TrEMBL
Match: tr|A0A1S3BBD5|A0A1S3BBD5_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo OX=3656 GN=LOC103488226 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIA KCRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TrEMBL
Match: tr|A0A0A0LY30|A0A0A0LY30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIA KCRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TrEMBL
Match: tr|A0A2R6Q3N0|A0A2R6Q3N0_ACTCH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22829 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDA GDPIPTSAV+M+S+KHIA KC+ ENVA
Sbjct: 1  MASAVDAVGDPIPTSAVLMASAKHIATKCKGENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TrEMBL
Match: tr|A0A166H6C9|A0A166H6C9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002434 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-05
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+M++SKHIA++CR  NVA
Sbjct: 1  MASTVDAAGDPIPTSAVLMAASKHIASRCRDANVA 35

[Close]
BLAST of Cla97C06G115050 vs. TrEMBL
Match: tr|A0A124SBQ3|A0A124SBQ3_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006593 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-05
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDA G+PIPTSAV+MS+SKHIA +CR EN+A
Sbjct: 1  MASAVDAVGEPIPTSAVLMSASKHIAGRCRGENIA 35

[Close]
BLAST of Cla97C06G115050 vs. Swiss-Prot
Match: sp|Q8LGE7|NDA8B_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          M+S VDA G+PIPTSAV+ +S+KHI  +C  ENVA
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TAIR10
Match: AT5G18800.1 (Cox19-like CHCH family protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          M+S VDA G+PIPTSAV+ +S+KHI  +C  ENVA
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVA 35

[Close]
BLAST of Cla97C06G115050 vs. TAIR10
Match: AT3G06310.1 (Cox19-like CHCH family protein)

HSP 1 Score: 40.8 bits (94), Expect = 3.9e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 3  SVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          + VD  G+PIPTSAV+ +S+KHI  +C  EN+A
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMA 37

The following BLAST results are available for this feature:
BLAST of Cla97C06G115050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958837.12.4e-0791.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m... [more]
XP_022930219.12.4e-0791.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m... [more]
XP_004135555.15.3e-0791.43PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucum... [more]
XP_022138355.11.5e-0685.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charan... [more]
PSS01472.12.2e-0577.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B like [Actinidia c... [more]
BLAST of Cla97C06G115050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BBD5|A0A1S3BBD5_CUCME3.5e-0791.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo O... [more]
tr|A0A0A0LY30|A0A0A0LY30_CUCSA3.5e-0791.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=4 SV=1[more]
tr|A0A2R6Q3N0|A0A2R6Q3N0_ACTCH1.5e-0577.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B like OS=Actinidia... [more]
tr|A0A166H6C9|A0A166H6C9_DAUCA1.9e-0577.14Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002434 ... [more]
tr|A0A124SBQ3|A0A124SBQ3_CYNCS2.5e-0574.29CHCH-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006593 PE... [more]
BLAST of Cla97C06G115050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LGE7|NDA8B_ARATH9.8e-0562.86NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th... [more]
BLAST of Cla97C06G115050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18800.15.4e-0662.86Cox19-like CHCH family protein[more]
AT3G06310.13.9e-0454.55Cox19-like CHCH family protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G115050.1Cla97C06G115050.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G115050Cla009349Watermelon (97103) v1wmwmbB406
Cla97C06G115050ClCG06G005540Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G115050CmaCh08G011950Cucurbita maxima (Rimu)cmawmbB921
Cla97C06G115050CmoCh17G002830Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G115050CmoCh08G011680Cucurbita moschata (Rifu)cmowmbB896
Cla97C06G115050Carg05477Silver-seed gourdcarwmbB0070
Cla97C06G115050Carg15950Silver-seed gourdcarwmbB0334
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G115050Wax gourdwgowmbB087
Cla97C06G115050Wax gourdwgowmbB203
Cla97C06G115050Watermelon (97103) v2wmbwmbB137
Cla97C06G115050Silver-seed gourdcarwmbB0632
Cla97C06G115050Silver-seed gourdcarwmbB0868
Cla97C06G115050Cucumber (Gy14) v2cgybwmbB222
Cla97C06G115050Cucumber (Gy14) v2cgybwmbB452
Cla97C06G115050Cucumber (Gy14) v1cgywmbB453
Cla97C06G115050Cucumber (Gy14) v1cgywmbB624
Cla97C06G115050Cucurbita maxima (Rimu)cmawmbB266
Cla97C06G115050Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G115050Cucurbita maxima (Rimu)cmawmbB865
Cla97C06G115050Cucurbita moschata (Rifu)cmowmbB246
Cla97C06G115050Cucurbita moschata (Rifu)cmowmbB837
Cla97C06G115050Wild cucumber (PI 183967)cpiwmbB239
Cla97C06G115050Wild cucumber (PI 183967)cpiwmbB500
Cla97C06G115050Cucumber (Chinese Long) v3cucwmbB233
Cla97C06G115050Cucumber (Chinese Long) v3cucwmbB493
Cla97C06G115050Cucumber (Chinese Long) v2cuwmbB231
Cla97C06G115050Cucumber (Chinese Long) v2cuwmbB473
Cla97C06G115050Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G115050Bottle gourd (USVL1VR-Ls)lsiwmbB344
Cla97C06G115050Melon (DHL92) v3.6.1medwmbB118
Cla97C06G115050Melon (DHL92) v3.6.1medwmbB442
Cla97C06G115050Melon (DHL92) v3.5.1mewmbB128
Cla97C06G115050Melon (DHL92) v3.5.1mewmbB448
Cla97C06G115050Watermelon (Charleston Gray)wcgwmbB238
Cla97C06G115050Watermelon (97103) v1wmwmbB217