CmoCh16G007320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G007320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA binding protein
Location	Cmo_Chr16 : 3651381 .. 3656320 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAGCCCGCGAAGCTTGTTGATTCGTATCGAACTGTTCGTTCTCTGTTCTTCGGAAGCCGACTGAAAAGCTCTCCAATGGAGGGAACCAATAAAACCACCAAAAGAAAGCTGGCGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGAAAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTGTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGATACGACCCGAGAAACCCTAATGACAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGTATAAGGCGTTGAAGGAACCTAGGAAGAGGATTAATAATCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCAGTGCCGCCCCCGCAAAGCCATGAGATTGGCTCGCGGAAGATTTATGTCGCTAATGTGCACCAAAACGTGGATGCTGAGAGGCTTAGGGCGTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGGGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAGGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGTCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACACAGGCAGCGAAGAGCTTGGGGCAAAGCCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCATTTGTTTGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGCATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCTGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAAGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGGTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGTGGATACACGTCACATTTGTGGTATGAGATGTTTCATATTCTTTTTATTTACTGCACTTTAAGCCTCCTATCATTTGTATGTTTCAACTTTTCATTCAGTGCTTAGCAACAGCCTGCGTGTACAATTTTGATTTAGGTAATTTAGTATATAAAGTACCTAAGGCTACCATTAGGTGGTAATTCTAAGAATTTATAGTATTGTAATCCTCTTATTCATAAGGTGGTTATCAAACTTTAAAATGGTTAAAGATGCCCTTCTCAAGGTCATACCTCTAGCCTAGGCAGCTTTATTTAATACTCCCCACATATTATCTATCTATATTTAGGATGGCAGTGGAGCTATCAAAGTAAAGTAGTTGAAACGGAATTGTAGAGACTTCTTTGAAATGAGTTCGGTAAGGAAGGAGGTTTATGAATTGTATCTAGTGAACTAGAGGAGGATAGCTTGATGCTGTCGTGATGCAAGACGTTTTAGGAGGTCTAACGTTTATGGGGTGCAGATAGATGTGACTCCAGTTATGGTAAAATTTTATGCTTAACAGGTCTATCAATTTAAGAAAAGTGATGTTGAAATTGACTTATGGAAAACCGAAGTGTGATCAAAATATTAGCTAAATGGACTACCGAGCATAAAACTAAGCAGCTATTGAAATAAAATTGAAGATAATACCATTGTAGTCCCCTAATGTCCTACATCTAACTGAGAGAGTGGAGCTAGAGATAGGTCTTTTGGTTTTTCTGTTGTTGGGTGGTTAAGGATCAAGAATGAGTGGGAAGGTGTGCTTGTTAAGTGCAGTGACAGATGGCAATGGCACATAGTCAGGGACAACTGCCAAAGTGGATCCCAAGGTGGTGGAGGTAGGTATGGCGGCGACGGGAATGGCTGAACTTGAAACTGCTATAGCTGTGGTGAATCTGGACATGGCACTGGAGAGTATCCACACGGTGTCCATTGATATCGTAAATTGGTGATTGACAGTTACTTCTCTGCTTGTTGGTGTGCTTTTTTAGGTTTCGTTCACTATCTCGGTATCAATCTAATGGGTCTTTAAGCTGGGTCTGTTCGGTGTTTTGAGATAGGATCAAGTAGCTCTCCTTATGGACTTTTTTCCCCGGTAATGAGAAACCTATGGATGTATTAAGAAGAACAAAACCTCAAAATAACGTAAAGGGAAGAGGAAGAGAGAGCCCCTCCCAAATGATAATCACATAAAAGCCTTCCAACCCTGAAGAATCATGGAAAGCAGGTAATTACAAAATGATTTGCAGTTTGGCACCAATCTTAACTTGGACTGGTGTTTGAATTAGGGATGTTTTATCAGTGGTCCTTAGGAGGAGATGATTATTGGGAGGAACAAAAGGAAATTCAAGATAGGAAGAGGAGTTATTGGTAAGAGGTTCAAAAGGGACTCACATTAGTGCTTCTCCCTTGTATATCTTCTATTAAGTTTTGCAGTCATTTTCTTCCTTTTTTATTTTTTATTTTTTATTTTTACTATCAACAGTTGGAGAGCTTTTTTCTAAATCGTTTTGATGGTCCCCTTTTTTGTTGGTTGGCCTTGTTCGCCTTTTCCGTTTTCCTTTTCTTTCCTTTATTATTATTATTATTATTATTATTATTGGGGATGTACGGCCTCTACTTGTTCCTTCCCATTTATTAACGAAAGCCAGTTTCATATATATATATATATATCAGACACTCGTGTTCGGTTACTTTTTCTGAAAAGTAATTATAATTCCATTTTAGCTATCTAAAATCACTTGGATATTCAACTCACAACTGCTATCCCCAAACTTGAAGACAGCTCTACTCTAACTACGCCCCCCACCCATTCCCAAACCCAAACCCAAAAGAAAATTCTTCCTTGGGTCACTTTTGTTCTTAGCTTTCTTCTGTCCTAGTTTGATTTATGACATGTTTTTCATTTATTTTCCAACAGAATTTGCCTGTCTTTAGATAATTTGAAAGTTATATCAGGTTGAAGATTTGCGCTCCTTTTGACTTCCATTTACCAGAAAACACTTCTTCAATTTTTTTAATTTTATTTTATTTACTTATTATTTATTTCCTTGTGGTCATAAATACTTAAGTCAATGCCGTTACATGTTGCTTGTCTTTTCAATTTTGAACAAACTTGCTTCGCTCTTTTTACTGCCCGACTTAGTCACTGGCCATCTTTTACAATTATTTCTTTCGGATTATTTTTTTATAGCACGATTTATTGAACTTGTTTTTATGCTTTCCTTTGATGATCATTCTTTTTCTATACTTCTTCTGATTGTAACTATTTGGGGAACTGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTTTCCTTCTTTCTTCCTTTGATTTCTTGTTTCATTTTTCTTATTTGAATCTTCAACTTCACTGTTTTGATGGGAGTATTCATTTGACAGGCCAGATTATTAGTTTGCGTTGTCTTATATCTTTTTAGATGCTTGGGAATCCATATTTGCGTTTGAGGTGCTGCTGAACTTGTGGATGAATGATCCTGTACTGTACTTTTGGGAAAGTTTATGTTCAGAGCTTCATTTGGGCTTTGATACCTTTTTCCCACAAACCCCTTTCGTCTCTTTTCACTTTTTTTTCCTTCTTTTTTTCCTTTTCTCCATTCCTCCCCACTTTTTAGTTGTTTTATGTAGTAAGAACCTGCTGCTGGGCAATAGTCATCTTACGTTTTATACTTCACCTTTGTCAATATTATCACTTTTAATTCTTTTGAAGTTTTTTTTTATACATATATTCTTTTTTTGTTGTAATTTCTTTTTCCTCGAGTATCACCTTCATTTTAATCTTCGGCTTCTGAGTTATAACCTTCCGCCCTATTAATAATAAATGGAAGTCCCTTTTTGTGTCCTGTTGGAGTTAATCAAGTGTTGTTGGAGGCTGCCAAGGATTAGGAATAACCAAATCTTCTAAGCGAATCCAGTAGTGGTAGGGTGATGATTAGTGTTATTTGGCTAAGTGTGAAACTATTCTTGGGTCCTATTATTCTGCTAACTTTTTTAGGTTGTGAATATATATAATGCTCTTCTGTTACCGGTTCAGAATCTGCAGTGGAAGAACTTTTGTGATGCAGGTTTGTTTCTTTGCTCTGCTTCGTCGCCTTCATACTCATCATCAGTCTTTGCTCTTCCTTGTTTTCTTCATTTTCATTTTCTTCCCCGTTCGTTGCCCTCGTCGTCGTTGCCCTTCTCCATTTTTCATACAATTCTCGGGGTCGTGACTAAAATGAACCTCACCCACTTCATCAAATTCTTCCTTTTTCATACAATTGGCTTGGTTTGATTCTCCAAGTTTTTCAGTTGGTAATTCTGAAGGTCGTGCAGAAGGCTGATGATGGGTAGAGCAGAATGAGACAGGTAAGGTATGGACATGTATATATATGTATATGTATATGTGTATGTATATATGTATATATGCATTCATTCAAACTAAGCTTCAGCTGTTGGCGTCACTGCATCCATCTGTGCAGAACAGATAGTCTTGAAGCATTTCTGTGGCTTGTTTCTGTTGATTCTAATGAACTTTACATGCACAATAAATCAAGCATACCATCAAATGAGTGTTTGTTTAGTTTTTTTTTTTAAATCATTTTTTAAAATATTAATGTGTGGTTAGAAAATTA

mRNA sequence

ACCAGCCCGCGAAGCTTGTTGATTCGTATCGAACTGTTCGTTCTCTGTTCTTCGGAAGCCGACTGAAAAGCTCTCCAATGGAGGGAACCAATAAAACCACCAAAAGAAAGCTGGCGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGAAAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTGTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGATACGACCCGAGAAACCCTAATGACAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGTATAAGGCGTTGAAGGAACCTAGGAAGAGGATTAATAATCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCAGTGCCGCCCCCGCAAAGCCATGAGATTGGCTCGCGGAAGATTTATGTCGCTAATGTGCACCAAAACGTGGATGCTGAGAGGCTTAGGGCGTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGGGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAGGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGTCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACACAGGCAGCGAAGAGCTTGGGGCAAAGCCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCATTTGTTTGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGCATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCTGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAAGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGGTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGTGGATACACGTCACATTTGTGGCCAGATTATTAGTTTGCGTTGTCTTATATCTTTTTAGATGCTTGGGAATCCATATTTGCGTTTGAGGTGCTGCTGAACTTGTGGATGAATGATCCTGTACTGTACTTTTGGGAAAGTTTATGTTCAGAGCTTCATTTGGGCTTTGATACCTTTTTCCCACAAACCCCTTTCGTCTCTTTTCACTTTTTTTTCCTTCTTTTTTTCCTTTTCTCCATTCCTCCCCACTTTTTAGTTGTTTTATGTAGTAAGAACCTGCTGCTGGGCAATAGTCATCTTACGTTTTATACTTCACCTTTGTCAATATTATCACTTTTAATTCTTTTGAAGTTTTTTTTTATACATATATTCTTTTTTTGTTGTAATTTCTTTTTCCTCGAGTATCACCTTCATTTTAATCTTCGGCTTCTGAGTTATAACCTTCCGCCCTATTAATAATAAATGGAAGTCCCTTTTTGTGTCCTGTTGGAGTTAATCAAGTGTTGTTGGAGGCTGCCAAGGATTAGGAATAACCAAATCTTCTAAGCGAATCCAGTAGTGGTAGGGTGATGATTAGTGTTATTTGGCTAAGTGTGAAACTATTCTTGGGTCCTATTATTCTGCTAACTTTTTTAGGTTGTGAATATATATAATGCTCTTCTGTTACCGGTTCAGAATCTGCAGTGGAAGAACTTTTGTGATGCAGGTTTGTTTCTTTGCTCTGCTTCGTCGCCTTCATACTCATCATCAGTCTTTGCTCTTCCTTGTTTTCTTCATTTTCATTTTCTTCCCCGTTCGTTGCCCTCGTCGTCGTTGCCCTTCTCCATTTTTCATACAATTCTCGGGGTCGTGACTAAAATGAACCTCACCCACTTCATCAAATTCTTCCTTTTTCATACAATTGGCTTGGTTTGATTCTCCAAGTTTTTCAGTTGGTAATTCTGAAGGTCGTGCAGAAGGCTGATGATGGGTAGAGCAGAATGAGACAGGTAAGGTATGGACATGTATATATATGTATATGTATATGTGTATGTATATATGTATATATGCATTCATTCAAACTAAGCTTCAGCTGTTGGCGTCACTGCATCCATCTGTGCAGAACAGATAGTCTTGAAGCATTTCTGTGGCTTGTTTCTGTTGATTCTAATGAACTTTACATGCACAATAAATCAAGCATACCATCAAATGAGTGTTTGTTTAGTTTTTTTTTTTAAATCATTTTTTAAAATATTAATGTGTGGTTAGAAAATTA

Coding sequence (CDS)

ATGGAGGGAACCAATAAAACCACCAAAAGAAAGCTGGCGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGAAAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTGTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGATACGACCCGAGAAACCCTAATGACAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGTATAAGGCGTTGAAGGAACCTAGGAAGAGGATTAATAATCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCAGTGCCGCCCCCGCAAAGCCATGAGATTGGCTCGCGGAAGATTTATGTCGCTAATGTGCACCAAAACGTGGATGCTGAGAGGCTTAGGGCGTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGGGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAGGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGTCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACACAGGCAGCGAAGAGCTTGGGGCAAAGCCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCATTTGTTTGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGCATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCTGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAAGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGGTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGTGGATACACGTCACATTTGTGGCCAGATTATTAG

Homology

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BLAST of CmoCh16G007320 vs. Swiss-Prot
Match: UBA2B_ARATH (UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.4e-61
Identity = 156/386 (40.41%), Postives = 214/386 (55.44%), Query Frame = 1


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           DDD +  ++DL   L+PFSK QL+ L+   A +  ++  +IR  AD D+ +RKIFVHGL 
Sbjct: 80  DDDEEEPIEDL---LEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLG 139

Query: 98  WDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNR 157
           WDT  ++L+  F+ +GEIEDC  V+DK +G++KGYGFILFKSR GA  ALK+P+K+I  R
Sbjct: 140 WDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTR 199

Query: 158 MTSCQLASLGSVP-----PPQSH---EIGSRKIYVANVHQNVDAERLRAFFAKFGELEMG 217
           MT+CQLAS+G V       P  H   E   RKIYV+NV  ++D ++L  FF++FGE+E G
Sbjct: 200 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEG 259

Query: 218 PIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEG----------- 277
           P+G D  TGR +G+A+F+YR+ E A+KALEEPHK FEG+ LHC +A++G           
Sbjct: 260 PLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNH 319

Query: 278 KNKNQNST-QAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNPMYGGYGNPALGGGMLNQ 337
            + NQNS  Q   + G   P                         GG+G+   G     Q
Sbjct: 320 NSHNQNSRYQRNDNNGYGAP-------------------------GGHGHFIAGNNQAVQ 379

Query: 338 GVVPMSQVGLIG--SSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYGPGS-SSLKGLPH 397
              P     L    +S GAG+GL+             A G +LLG+ G  S  ++ G+P 
Sbjct: 380 AFNPAIGQALTALLASQGAGLGLN------------QAFGQALLGTLGTASPGAVGGMPS 425

Query: 398 IYSSSMLGKTGSESGQTAAGGSYGGY 401
            Y +      G   G  A  G  GGY
Sbjct: 440 GYGTQANISPGVYPGYGAQAGYQGGY 425

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BLAST of CmoCh16G007320 vs. Swiss-Prot
Match: UBA2A_ARATH (UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-59
Identity = 161/393 (40.97%), Postives = 216/393 (54.96%), Query Frame = 1


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+K+I +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIGSRKIYVANVHQNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E A++ALEEPHK FEG+ LHCQ+A +G     
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKP-- 331

Query: 278 NSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                    G+ Q             H    H   NP Y      GYG P  G G L  G
Sbjct: 332 ---------GKQQQ------------HHHNPHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VV-----PMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYG------PGSS 397
                  P +QV  I  ++G  +     S G+ GL+   A G +LLGS G      PG+ 
Sbjct: 392 NPAGMGGPTAQV--INPAIGQALTALLASQGA-GLAFNPAIGQALLGSLGTAAGVNPGNG 451

Query: 398 SLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGY 401
              G+P  Y +  +   G+  G     G  GGY
Sbjct: 452 --VGMPTGYGTQAMA-PGTMPGYGTQPGLQGGY 451

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BLAST of CmoCh16G007320 vs. Swiss-Prot
Match: UBA2C_ARATH (UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.2e-47
Identity = 137/366 (37.43%), Postives = 198/366 (54.10%), Query Frame = 1


Query: 47  DLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLM 106
           D  K+++ F+  QL++L+    V+ P++   +R  AD D++ RK+F+ GL+ DTT E L 
Sbjct: 33  DARKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLR 92

Query: 107 TVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASL 166
           ++F S+G++E+  V++DK TGK+KGYGF+ F    GA  ALKEP K+I+ R+T  QLA+ 
Sbjct: 93  SLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAAS 152

Query: 167 GSV-PPPQSHEIGSRKIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAI 226
           G+     Q  +I  RKIYVANV  ++ A+RL   F  +G++E GP+GFD  TG+SRG+A+
Sbjct: 153 GNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFAL 212

Query: 227 FIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMA---- 286
           F+Y+T EGA+ AL +P KV +G  L+C+ A +GK   +     A+  G     V      
Sbjct: 213 FVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMG 272

Query: 287 -AMAAAPNLHLFAQHPSLNPMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSG 346
               A P              YG  G  +  GG    G  P   +    SS+  G+G +G
Sbjct: 273 MVRPAGP--------------YGAAGGISAYGGY--SGGPPAHHMNSTHSSM--GVGSAG 332

Query: 347 YSG--GSYGLSQLSAGGSSLLGSY-----GPGSSSLKGLPHIYSSSMLGKTG-SESGQTA 399
           Y G  G YG      GG+ + G       GPG+ S  G   +  SSM G  G  ESG   
Sbjct: 333 YGGHYGGYG----GPGGTGVYGGLGGGYGGPGTGS--GQYRMPPSSMPGGGGYPESGHYG 374

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BLAST of CmoCh16G007320 vs. Swiss-Prot
Match: UBA1A_ARATH (UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-40
Identity = 92/186 (49.46%), Postives = 129/186 (69.35%), Query Frame = 1


Query: 5   NKTTKRKLAKKSENKVDKKPK--KEKDDPVPPQPH----------DDDSDSDLD--DLSK 64
           +K+ KRKL K      DKK K  K++  P    P+          D +SD++ D  +L +
Sbjct: 6   DKSKKRKLVKSKSTNFDKKQKINKQQQQPESSTPYSSSSSSSDSSDSESDNEFDPEELRE 65

Query: 65  LLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFE 124
           LLQP+SK QL++L+CS +    ++ + +  AADRDVT+RKIFV+GL W+TTRETL+ VFE
Sbjct: 66  LLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFE 125

Query: 125 SFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVP 177
            +GEIE+C VV+DK TGKAKG+GF++FK+R+GA +ALKEP+KRI NR  +CQLAS+G   
Sbjct: 126 GYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAA 185

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BLAST of CmoCh16G007320 vs. Swiss-Prot
Match: UBA1C_ARATH (UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 4.5e-33
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 1


Query: 3   GTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQLIE 62
           G  K+  +K  K+ + K  KK KK+          D D + D +D+ +LL  +SK +L+ 
Sbjct: 329 GEQKSESKKAKKQDKEKKRKKDKKQTKS-------DSDFEHDKEDIKQLLVAYSKEELVN 388

Query: 63  LICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNVVM 122
           LI  TA K   L + I  +ADRD+  R IFV G  WDTT+E L T FES+GEIE+C+VVM
Sbjct: 389 LIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVM 448

Query: 123 DKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLAS 166
           DK+TG+ KGYGF++FK+R+GA +ALK P KR+ NR+  C LAS
Sbjct: 449 DKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLAS 484

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BLAST of CmoCh16G007320 vs. TrEMBL
Match: A0A0A0KXV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031080 PE=4 SV=1)

HSP 1 Score: 690.6 bits (1781), Expect = 1.1e-195
Identity = 361/406 (88.92%), Postives = 380/406 (93.60%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +  V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEHNVQSQPVDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGFILFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFG+LEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLN- 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LN 
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAESLGQNQTPVMAAMAAAPNLQLFAQHPGLNH 300

Query: 301 PMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360
           P+YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL
Sbjct: 301 PVYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360

Query: 361 GSYGPGSSSLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGYTSHLW 406
           GSYGPGSSSLKGLPHIYSS+MLGKT SESGQ AAGGS GGYTSHLW
Sbjct: 361 GSYGPGSSSLKGLPHIYSSTMLGKTVSESGQAAAGGSLGGYTSHLW 406

[Close]

BLAST of CmoCh16G007320 vs. TrEMBL
Match: F6H4P1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01290 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 5.5e-94
Identity = 210/398 (52.76%), Postives = 266/398 (66.83%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPV---PPQPHDDDSDSDLDDLSKLLQPFSK 60
           M  T K+ K+KL KK+  K++KK K +K +      P   D DSDS  D L KLL+P+SK
Sbjct: 1   MAKTKKSKKQKLTKKTPKKIEKKLKSKKVEKALATKPSDSDSDSDSGFDKLQKLLEPYSK 60

Query: 61  TQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIED 120
            QLI  I   A  D +L  +IR  ADRDV++RKIFVHGL WDTTRETL+  FE +G+IED
Sbjct: 61  DQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETLLAAFEPYGQIED 120

Query: 121 CNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEI 180
           CNVV D+NTGKAKGYGF+LFK+RQGA KALK+P K+INNRMT  QLAS+G  PPPQS + 
Sbjct: 121 CNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLASMGPSPPPQSQDT 180

Query: 181 GSRKIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKA 240
             RKIYV+NV  +VD ERLR+FFAKFGE+E GPIGFD +TG+SRG+A+F+Y+  E ARKA
Sbjct: 181 VGRKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSRGFALFVYKNQESARKA 240

Query: 241 LEEPHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPS 300
           LE+P+++FEG++LHCQ+A+EGKNK            Q QP  +AA+AA  N  + +QHP+
Sbjct: 241 LEDPYRIFEGHQLHCQKATEGKNKVP---------AQPQPQ-LAAVAATQNF-MLSQHPT 300

Query: 301 LNPMYGGY-------------GNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGG 360
           LN +Y G               NPA+ G M N GV+  SQV   GS +G+  GL GY  G
Sbjct: 301 LNTLYSGLLAHPNASMIGAAAVNPAVAGAM-NPGVISSSQV---GSVIGSVEGLGGY--G 360

Query: 361 SYGLSQLSAGGSSLLGSYGPGSSSLKGLPHIYSSSMLG 383
           ++G++      S L    GP S    GL H Y S+ LG
Sbjct: 361 THGVAGFGGTPSVL----GPPS---LGLQHAYPSTQLG 374

[Close]

BLAST of CmoCh16G007320 vs. TrEMBL
Match: B9H585_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08340g PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.5e-88
Identity = 207/423 (48.94%), Postives = 267/423 (63.12%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKE------KDDPVPPQPHDDDSDSDLDDLSKLLQP 60
           M  T KT K K AKK E    +KP K+      K  P+P         SD  DLS LL+P
Sbjct: 1   MAKTEKTKKLKTAKKPETTTKQKPLKKPKLKIRKTKPLP---------SDPADLSTLLEP 60

Query: 61  FSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGE 120
           ++K QLI+LI ++A+K+P+L + I   ADRDVT+R +FVHG SWDTTR+ L++ F +FGE
Sbjct: 61  YTKDQLIDLITNSAIKNPSLYSLIHQHADRDVTHRNVFVHGFSWDTTRQDLVSAFAAFGE 120

Query: 121 IEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQS 180
           IE+CNVV+DK TGKAKGYGF+LFKSR+ A  ALKE ++ +N+RM SCQLAS+GS     +
Sbjct: 121 IEECNVVIDKATGKAKGYGFVLFKSRKAAISALKETKRMVNDRMASCQLASVGSANAASA 180

Query: 181 H-----EIGSRKIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYR 240
                 E G RKI+V+NV  + D E+LRAFF KFGE+E GPIGFD ETG+SRGYA+F+Y+
Sbjct: 181 AKGKELEGGVRKIFVSNVGMSTDKEKLRAFFEKFGEIENGPIGFDKETGKSRGYALFVYK 240

Query: 241 TNEGARKALEEPHKVFEGNKLHCQRASEGKNK-NQNSTQAAKSLGQSQPSVMAA----MA 300
           T EGA KALEEPHK+FEG +L C  A+EGKNK NQN  Q  + + Q QP         +A
Sbjct: 241 TVEGAIKALEEPHKIFEGQQLRCSVATEGKNKTNQNVAQGMQQVVQQQPVHQQPQGQFLA 300

Query: 301 AAPNLHLFAQHPSLNPMYGG-YGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSG 360
           AA NL LF QHP  NP+Y    G+  +GGGM++  V+  S V    S VG          
Sbjct: 301 AAQNLALFGQHPGFNPLYSALLGSTGVGGGMISP-VIGQSMVPTATSQVGG--------- 360

Query: 361 GSYGLSQLSAGGSSLLGSYGPGSSSLKGLPHIYSS-SMLGKTGSESGQTAAGGSYGGYTS 406
                  L  G  S L +Y     + + L H+YSS + +G+TG   GQ  AGGS+ GY  
Sbjct: 361 -------LGVGSQSTLEAY----RAAQVLQHVYSSTTQIGQTGMGRGQ-GAGGSFTGYPK 392

[Close]

BLAST of CmoCh16G007320 vs. TrEMBL
Match: A0A067KSI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09364 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.4e-88
Identity = 209/441 (47.39%), Postives = 272/441 (61.68%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKP------KKEKDDPV-------------PPQPHDDDS 60
           M  T K  K KL K S+    + P      KK K +               PP+    DS
Sbjct: 1   MAKTQKPKKIKLVKVSDANSKQNPLQKPNLKKRKSETFASSPAAAATASSCPPKNTQTDS 60

Query: 61  DSDLD------------DLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNR 120
           DSD D            D+  LL+P++K QLIELI   A  +P++   I   ADRD ++R
Sbjct: 61  DSDSDSSSNSHFDSDPVDIPTLLEPYTKEQLIELISIAATNNPSIYPLINEHADRDASHR 120

Query: 121 KIFVHGLSWDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKE 180
           KIFVHG +WDTTRE +++ FE FGEIE+CNVV DK TGKAKGYGF+LFK+R+GA  ALK+
Sbjct: 121 KIFVHGFTWDTTRENVLSAFEPFGEIEECNVVTDKVTGKAKGYGFVLFKTRKGAAMALKD 180

Query: 181 PRKRINNRMTSCQLASLG-SVPPPQSHEIGSRKIYVANVHQNVDAERLRAFFAKFGELEM 240
           P+K INNR  SCQLAS+G +    +  E+G+RKIYV+NV  N D E+L+AF AKFGE+E 
Sbjct: 181 PKKNINNRFASCQLASIGPAANVGKDQEVGARKIYVSNVQVNADKEKLKAFLAKFGEIES 240

Query: 241 GPIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNK-NQNSTQ 300
           GPIGFD ETGRSRGYA+F+Y+T EGA++ALEEPHK+FEG +LHC  A+EGKNK NQ   Q
Sbjct: 241 GPIGFDKETGRSRGYALFVYKTVEGAKRALEEPHKMFEGQQLHCSIATEGKNKTNQVQMQ 300

Query: 301 AAKSL-GQSQPSVMAAMAAAPNLHLFAQHPSLNPMYGG-YGNPALG--GGMLNQGVVPMS 360
             + +  QSQ  ++AA+AAA NL LF Q P +NP+YGG   NPA     GM+N  +V   
Sbjct: 301 QQQQVKQQSQDQMLAAVAAAQNLALFGQQPGINPVYGGLLSNPAAAAPAGMINPLMVGAV 360

Query: 361 QVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYGPGSSSLKGLPHIYSSSMLGK 405
              L+ +S   G+GL+                 S+LG+YG G    +GL H+YS++  G+
Sbjct: 361 SQSLVPTSQIGGLGLA---------------TQSVLGTYGAG----RGLQHVYSNTQTGQ 420

[Close]

BLAST of CmoCh16G007320 vs. TrEMBL
Match: M5VY35_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005550mg PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 8.5e-87
Identity = 216/478 (45.19%), Postives = 285/478 (59.62%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPK-------------KEKDDPVPPQPH---------- 60
           M    KT KR+L K S+  ++KKPK             +E++ P P Q            
Sbjct: 1   MAKITKTKKRRLIKTSDKTIEKKPKTQNPKQKFEEKEEREEEHPNPNQKQPQSDSDSGSV 60

Query: 61  ----DDDSDSDLDDLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFV 120
                D S+SD+++L +LLQ ++K QLIELI   A KD  L  +IR AAD DV++RKIF+
Sbjct: 61  SDSDSDSSESDVENLPELLQAYTKDQLIELIVEAASKDSALFNRIRDAADGDVSHRKIFI 120

Query: 121 HGLSWDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKR 180
           HGL WDTTRETL+  FE FGEIE+CN+V+DK TGKAKGYGF+LFK+R+GA KALK P+K 
Sbjct: 121 HGLGWDTTRETLVAAFEPFGEIEECNLVLDKATGKAKGYGFVLFKTRRGAAKALKNPKKN 180

Query: 181 INNRMTSCQLASLG---------SVPPPQSHEIGSRKIYVANVHQNVDAERLRAFFAKFG 240
           I+NR+ SCQLAS+G         S       +  SRKIYV++V  +VD E+LR FFAKFG
Sbjct: 181 ISNRIASCQLASVGPANNNTTTSSSSFNAQSDSASRKIYVSSVPHDVDGEKLRIFFAKFG 240

Query: 241 ELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQN 300
           E+E GP+GFD +TG+ +G+A+F+Y+T               EG++L CQ+A+EG +KN+N
Sbjct: 241 EIETGPMGFDSQTGKCKGFALFLYKT--------------VEGHQLQCQKAAEG-SKNKN 300

Query: 301 STQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNPMYGGYG------------------ 360
           S   A   GQ Q   +AA+AAA N+ LF QHP+LNP+YGG                    
Sbjct: 301 SA-VAPPQGQMQQPTLAAVAAAQNMALFGQHPNLNPLYGGLMGNVGGGFVPGSANPGMVA 360

Query: 361 ---NPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAG--------- 405
              NP + GG LN  V+P+SQVG     VGAG+G  GYSGGS+GL  L  G         
Sbjct: 361 RALNPGIMGGALNPSVIPVSQVG----QVGAGVG--GYSGGSHGLVNLGGGSHGLVSLGG 420

[Close]

BLAST of CmoCh16G007320 vs. TAIR10
Match: AT2G41060.1 (AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 238.4 bits (607), Expect = 7.6e-63
Identity = 156/386 (40.41%), Postives = 214/386 (55.44%), Query Frame = 1


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           DDD +  ++DL   L+PFSK QL+ L+   A +  ++  +IR  AD D+ +RKIFVHGL 
Sbjct: 80  DDDEEEPIEDL---LEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLG 139

Query: 98  WDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNR 157
           WDT  ++L+  F+ +GEIEDC  V+DK +G++KGYGFILFKSR GA  ALK+P+K+I  R
Sbjct: 140 WDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTR 199

Query: 158 MTSCQLASLGSVP-----PPQSH---EIGSRKIYVANVHQNVDAERLRAFFAKFGELEMG 217
           MT+CQLAS+G V       P  H   E   RKIYV+NV  ++D ++L  FF++FGE+E G
Sbjct: 200 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEG 259

Query: 218 PIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEG----------- 277
           P+G D  TGR +G+A+F+YR+ E A+KALEEPHK FEG+ LHC +A++G           
Sbjct: 260 PLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNH 319

Query: 278 KNKNQNST-QAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNPMYGGYGNPALGGGMLNQ 337
            + NQNS  Q   + G   P                         GG+G+   G     Q
Sbjct: 320 NSHNQNSRYQRNDNNGYGAP-------------------------GGHGHFIAGNNQAVQ 379

Query: 338 GVVPMSQVGLIG--SSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYGPGS-SSLKGLPH 397
              P     L    +S GAG+GL+             A G +LLG+ G  S  ++ G+P 
Sbjct: 380 AFNPAIGQALTALLASQGAGLGLN------------QAFGQALLGTLGTASPGAVGGMPS 425

Query: 398 IYSSSMLGKTGSESGQTAAGGSYGGY 401
            Y +      G   G  A  G  GGY
Sbjct: 440 GYGTQANISPGVYPGYGAQAGYQGGY 425

[Close]

BLAST of CmoCh16G007320 vs. TAIR10
Match: AT3G56860.3 (AT3G56860.3 UBP1-associated protein 2A)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-60
Identity = 161/393 (40.97%), Postives = 216/393 (54.96%), Query Frame = 1


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMTVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+K+I +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIGSRKIYVANVHQNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E A++ALEEPHK FEG+ LHCQ+A +G     
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKP-- 331

Query: 278 NSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                    G+ Q             H    H   NP Y      GYG P  G G L  G
Sbjct: 332 ---------GKQQQ------------HHHNPHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VV-----PMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYG------PGSS 397
                  P +QV  I  ++G  +     S G+ GL+   A G +LLGS G      PG+ 
Sbjct: 392 NPAGMGGPTAQV--INPAIGQALTALLASQGA-GLAFNPAIGQALLGSLGTAAGVNPGNG 451

Query: 398 SLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGY 401
              G+P  Y +  +   G+  G     G  GGY
Sbjct: 452 --VGMPTGYGTQAMA-PGTMPGYGTQPGLQGGY 451

[Close]

BLAST of CmoCh16G007320 vs. TAIR10
Match: AT3G15010.1 (AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-48
Identity = 137/366 (37.43%), Postives = 198/366 (54.10%), Query Frame = 1


Query: 47  DLSKLLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLM 106
           D  K+++ F+  QL++L+    V+ P++   +R  AD D++ RK+F+ GL+ DTT E L 
Sbjct: 33  DARKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLR 92

Query: 107 TVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASL 166
           ++F S+G++E+  V++DK TGK+KGYGF+ F    GA  ALKEP K+I+ R+T  QLA+ 
Sbjct: 93  SLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAAS 152

Query: 167 GSV-PPPQSHEIGSRKIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAI 226
           G+     Q  +I  RKIYVANV  ++ A+RL   F  +G++E GP+GFD  TG+SRG+A+
Sbjct: 153 GNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFAL 212

Query: 227 FIYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMA---- 286
           F+Y+T EGA+ AL +P KV +G  L+C+ A +GK   +     A+  G     V      
Sbjct: 213 FVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMG 272

Query: 287 -AMAAAPNLHLFAQHPSLNPMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSG 346
               A P              YG  G  +  GG    G  P   +    SS+  G+G +G
Sbjct: 273 MVRPAGP--------------YGAAGGISAYGGY--SGGPPAHHMNSTHSSM--GVGSAG 332

Query: 347 YSG--GSYGLSQLSAGGSSLLGSY-----GPGSSSLKGLPHIYSSSMLGKTG-SESGQTA 399
           Y G  G YG      GG+ + G       GPG+ S  G   +  SSM G  G  ESG   
Sbjct: 333 YGGHYGGYG----GPGGTGVYGGLGGGYGGPGTGS--GQYRMPPSSMPGGGGYPESGHYG 374

[Close]

BLAST of CmoCh16G007320 vs. TAIR10
Match: AT2G22090.2 (AT2G22090.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 166.4 bits (420), Expect = 3.7e-41
Identity = 92/186 (49.46%), Postives = 129/186 (69.35%), Query Frame = 1


Query: 5   NKTTKRKLAKKSENKVDKKPK--KEKDDPVPPQPH----------DDDSDSDLD--DLSK 64
           +K+ KRKL K      DKK K  K++  P    P+          D +SD++ D  +L +
Sbjct: 6   DKSKKRKLVKSKSTNFDKKQKINKQQQQPESSTPYSSSSSSSDSSDSESDNEFDPEELRE 65

Query: 65  LLQPFSKTQLIELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFE 124
           LLQP+SK QL++L+CS +    ++ + +  AADRDVT+RKIFV+GL W+TTRETL+ VFE
Sbjct: 66  LLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFE 125

Query: 125 SFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVP 177
            +GEIE+C VV+DK TGKAKG+GF++FK+R+GA +ALKEP+KRI NR  +CQLAS+G   
Sbjct: 126 GYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAA 185

[Close]

BLAST of CmoCh16G007320 vs. TAIR10
Match: AT2G19380.1 (AT2G19380.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-34
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 1


Query: 3   GTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQLIE 62
           G  K+  +K  K+ + K  KK KK+          D D + D +D+ +LL  +SK +L+ 
Sbjct: 329 GEQKSESKKAKKQDKEKKRKKDKKQTKS-------DSDFEHDKEDIKQLLVAYSKEELVN 388

Query: 63  LICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNVVM 122
           LI  TA K   L + I  +ADRD+  R IFV G  WDTT+E L T FES+GEIE+C+VVM
Sbjct: 389 LIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVM 448

Query: 123 DKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLAS 166
           DK+TG+ KGYGF++FK+R+GA +ALK P KR+ NR+  C LAS
Sbjct: 449 DKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLAS 484

[Close]

BLAST of CmoCh16G007320 vs. NCBI nr
Match: gi|778690498|ref|XP_011653132.1| (PREDICTED: UBP1-associated protein 2B-like isoform X2 [Cucumis sativus])

HSP 1 Score: 698.4 bits (1801), Expect = 7.7e-198
Identity = 364/409 (89.00%), Postives = 383/409 (93.64%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +  V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEHNVQSQPVDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGFILFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFG+LEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLN- 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LN 
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAESLGQNQTPVMAAMAAAPNLQLFAQHPGLNH 300

Query: 301 PMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360
           P+YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL
Sbjct: 301 PVYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360

Query: 361 GSYGPGSSSLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGYTSHLWPDY 409
           GSYGPGSSSLKGLPHIYSS+MLGKT SESGQ AAGGS GGYTSHLWPDY
Sbjct: 361 GSYGPGSSSLKGLPHIYSSTMLGKTVSESGQAAAGGSLGGYTSHLWPDY 409

[Close]

BLAST of CmoCh16G007320 vs. NCBI nr
Match: gi|700198079|gb|KGN53237.1| (hypothetical protein Csa_4G031080 [Cucumis sativus])

HSP 1 Score: 690.6 bits (1781), Expect = 1.6e-195
Identity = 361/406 (88.92%), Postives = 380/406 (93.60%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +  V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEHNVQSQPVDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGFILFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFG+LEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLN- 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LN 
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAESLGQNQTPVMAAMAAAPNLQLFAQHPGLNH 300

Query: 301 PMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360
           P+YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL
Sbjct: 301 PVYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360

Query: 361 GSYGPGSSSLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGYTSHLW 406
           GSYGPGSSSLKGLPHIYSS+MLGKT SESGQ AAGGS GGYTSHLW
Sbjct: 361 GSYGPGSSSLKGLPHIYSSTMLGKTVSESGQAAAGGSLGGYTSHLW 406

[Close]

BLAST of CmoCh16G007320 vs. NCBI nr
Match: gi|778690495|ref|XP_011653131.1| (PREDICTED: UBP1-associated protein 2B-like isoform X1 [Cucumis sativus])

HSP 1 Score: 690.6 bits (1781), Expect = 1.6e-195
Identity = 361/406 (88.92%), Postives = 380/406 (93.60%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +  V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEHNVQSQPVDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGFILFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFG+LEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLN- 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LN 
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAESLGQNQTPVMAAMAAAPNLQLFAQHPGLNH 300

Query: 301 PMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360
           P+YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL
Sbjct: 301 PVYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360

Query: 361 GSYGPGSSSLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGYTSHLW 406
           GSYGPGSSSLKGLPHIYSS+MLGKT SESGQ AAGGS GGYTSHLW
Sbjct: 361 GSYGPGSSSLKGLPHIYSSTMLGKTVSESGQAAAGGSLGGYTSHLW 406

[Close]

BLAST of CmoCh16G007320 vs. NCBI nr
Match: gi|449462878|ref|XP_004149162.1| (PREDICTED: UBP1-associated protein 2B-like isoform X3 [Cucumis sativus])

HSP 1 Score: 686.8 bits (1771), Expect = 2.3e-194
Identity = 360/405 (88.89%), Postives = 379/405 (93.58%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +  V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEHNVQSQPVDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGFILFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFG+LEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLN- 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LN 
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAESLGQNQTPVMAAMAAAPNLQLFAQHPGLNH 300

Query: 301 PMYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360
           P+YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL
Sbjct: 301 PVYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLL 360

Query: 361 GSYGPGSSSLKGLPHIYSSSMLGKTGSESGQTAAGGSYGGYTSHL 405
           GSYGPGSSSLKGLPHIYSS+MLGKT SESGQ AAGGS GGYTSHL
Sbjct: 361 GSYGPGSSSLKGLPHIYSSTMLGKTVSESGQAAAGGSLGGYTSHL 405

[Close]

BLAST of CmoCh16G007320 vs. NCBI nr
Match: gi|659107614|ref|XP_008453765.1| (PREDICTED: UBP1-associated protein 2B-like [Cucumis melo])

HSP 1 Score: 594.7 bits (1532), Expect = 1.2e-166
Identity = 305/344 (88.66%), Postives = 323/344 (93.90%), Query Frame = 1


Query: 1   MEGTNKTTKRKLAKKSENKVDKKPKKEKDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQL 60
           MEGTNKT KRKL KKSENKVDKK KKE +D V  QP DD SDSD DDL KLL+PFSKTQL
Sbjct: 1   MEGTNKTAKRKLVKKSENKVDKKLKKELEDNVQSQPLDDVSDSDFDDLPKLLEPFSKTQL 60

Query: 61  IELICSTAVKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMTVFESFGEIEDCNV 120
           IELIC+TA+KDPNL+AQIRAAADRDVT+RKIFVHGL WDTTRETL +VFESFGEIEDCNV
Sbjct: 61  IELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFESFGEIEDCNV 120

Query: 121 VMDKNTGKAKGYGFILFKSRQGAYKALKEPRKRINNRMTSCQLASLGSVPPPQSHEIGSR 180
           VMD+NTGKAKGYGF+LFKSRQGA KALKEPRK+INNRMTSCQLAS+GSVPPPQS E+G R
Sbjct: 121 VMDRNTGKAKGYGFVLFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVPPPQSQEVGPR 180

Query: 181 KIYVANVHQNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGARKALEE 240
           KIYVANVH NVDAERLRAFFAKFGELEMGPIGFDPETG+SRGYAIFIYRTNEGARKALEE
Sbjct: 181 KIYVANVHHNVDAERLRAFFAKFGELEMGPIGFDPETGKSRGYAIFIYRTNEGARKALEE 240

Query: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAKSLGQSQPSVMAAMAAAPNLHLFAQHPSLNP 300
           PHKVFEGNKLHCQRASEGKNKNQNSTQAA+SLGQ+Q  VMAAMAAAPNL LFAQHP LNP
Sbjct: 241 PHKVFEGNKLHCQRASEGKNKNQNSTQAAQSLGQNQTPVMAAMAAAPNLQLFAQHPGLNP 300

Query: 301 MYGGYGNPALGGGMLNQGVVPMSQVGLIGSSVGAGIGLSGYSGG 345
           +YGGYG+PALGGGMLNQGVVPMSQVGL+GSSVGAGIGLSGYSGG
Sbjct: 301 VYGGYGSPALGGGMLNQGVVPMSQVGLVGSSVGAGIGLSGYSGG 344

The following BLAST results are available for this feature:

BLAST of CmoCh16G007320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBA2B_ARATH	1.4e-61	40.41	UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1	[more]
UBA2A_ARATH	2.2e-59	40.97	UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1	[more]
UBA2C_ARATH	3.2e-47	37.43	UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1	[more]
UBA1A_ARATH	6.6e-40	49.46	UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2	[more]
UBA1C_ARATH	4.5e-33	47.85	UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2	[more]

BLAST of CmoCh16G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV0_CUCSA	1.1e-195	88.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031080 PE=4 SV=1	[more]
F6H4P1_VITVI	5.5e-94	52.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01290 PE=4 SV=...	[more]
B9H585_POPTR	1.5e-88	48.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08340g PE=4 SV=1	[more]
A0A067KSI9_JATCU	3.4e-88	47.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09364 PE=4 SV=1	[more]
M5VY35_PRUPE	8.5e-87	45.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005550mg PE=4 SV=1	[more]

BLAST of CmoCh16G007320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41060.1	7.6e-63	40.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	1.2e-60	40.97	UBP1-associated protein 2A	[more]
AT3G15010.1	1.8e-48	37.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G22090.2	3.7e-41	49.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G19380.1	2.6e-34	47.85	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmoCh16G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690498\|ref\|XP_011653132.1\|	7.7e-198	89.00	PREDICTED: UBP1-associated protein 2B-like isoform X2 [Cucumis sativus]	[more]
gi\|700198079\|gb\|KGN53237.1\|	1.6e-195	88.92	hypothetical protein Csa_4G031080 [Cucumis sativus]	[more]
gi\|778690495\|ref\|XP_011653131.1\|	1.6e-195	88.92	PREDICTED: UBP1-associated protein 2B-like isoform X1 [Cucumis sativus]	[more]
gi\|449462878\|ref\|XP_004149162.1\|	2.3e-194	88.89	PREDICTED: UBP1-associated protein 2B-like isoform X3 [Cucumis sativus]	[more]
gi\|659107614\|ref\|XP_008453765.1\|	1.2e-166	88.66	PREDICTED: UBP1-associated protein 2B-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G007320.1	CmoCh16G007320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..157 score: 2.5E-15coord: 182..251 score: 2.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..162 score: 5.4E-21coord: 181..253 score: 9.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 180..257 score: 13.584coord: 89..189 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 174..262 score: 2.6E-17coord: 88..164 score: 2.4E-25coord: 18..40 score: 2.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 170..266 score: 6.65E-19coord: 71..169 score: 5.78
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 289..322 score: 9.4E-85coord: 62..262 score: 9.4E-85coord: 394..405 score: 9.4
None	No IPR available	PANTHER	PTHR24012:SF397	OLIGOURIDYLATE-BINDING PROTEIN 1A-RELATED	coord: 62..262 score: 9.4E-85coord: 289..322 score: 9.4E-85coord: 394..405 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G007320	Cucsa.029400	Cucumber (Gy14) v1	cgycmoB0000
CmoCh16G007320	CmaCh16G006710	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G007320	Cla014500	Watermelon (97103) v1	cmowmB301
CmoCh16G007320	Csa4G031080	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G007320	MELO3C017573	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G007320	ClCG07G009360	Watermelon (Charleston Gray)	cmowcgB294
CmoCh16G007320	CSPI04G04810	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G007320	Lsi07G001850	Bottle gourd (USVL1VR-Ls)	cmolsiB315
CmoCh16G007320	Cp4.1LG14g01480	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G007320	Cp4.1LG01g09540	Cucurbita pepo (Zucchini)	cmocpeB312
CmoCh16G007320	MELO3C017573.2	Melon (DHL92) v3.6.1	cmomedB336
CmoCh16G007320	CsaV3_UNG186420	Cucumber (Chinese Long) v3	cmocucB0404
CmoCh16G007320	CsaV3_4G004880	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G007320	Bhi01G001914	Wax gourd	cmowgoB0428
CmoCh16G007320	CsGy4G004720	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G007320	Carg05786	Silver-seed gourd	carcmoB1366
CmoCh16G007320	Carg14191	Silver-seed gourd	carcmoB1258

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G007320	CmoCh04G008510	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G007320	Watermelon (97103) v2	cmowmbB314
CmoCh16G007320	Watermelon (97103) v2	cmowmbB336
CmoCh16G007320	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G007320	Watermelon (97103) v1	cmowmB318