CmoCh16G000440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastid transcriptionally active7
Location	Cmo_Chr16 : 190488 .. 192796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAATTAATGAATAAAAATAATTGTTTAAAATTTATGAAAAACATATTACTTTCAATACTTTAATTTCTATATTTTCAGCTTAGAAGAGGACACTTTTCTTGAAAACTTGAAGAGGGAGGTTTATTTATCCAAACGGAGAAAGTATCATCCCAAAATGAAGAAGATAGGACAACGATGACTACAATTCCATCACTCTCCTTTGCTTCACCTGTAATCACTCTCTCCTTTTCTTTCTCCGTTTGGTTCTTTGGCAAATAATGGCTGAAATATCTGTGTTATGCTTTTGCTCTTTTTTATCTTTAGCATCTTTTCCAAAGCACATTAAATTTTGCTTAATGTTGGCCATTTTTTCTAGTTGTTACAGAGGATAGAGGTGAGGGTTGGAATTTCTCATGGATTTAACTCTCCTCCCCGGCTACAGGTTAAGATTCGAGAGATTCTTTCAACAACGAAGCTAGCCATGCTCTTGTCGCCCTTCATTGTTCACGTTTTCTTGTTTTAGTTTTCAGGTGGCCGCCAGAAAGCAGGGAAATGGTGAAGGTGTCGGGCGGCGAGTGTGGCGACGAAGAAAATTGGTATCTTAATTTCTCCCTCACCATTTCTTAATTTCTTTTGTCTCATTCATGTCACTCTCTCAAACTGCACCAGTCGAACTCACAATTTAAAAACAAAATCGATGGAAGCATCGAAATTTCCTAACTTGACCTAAAGTTTCTTTAAAGAAACCAAGTTTGTGTAATGATATGCGGTATATTGCAACTGCCTAAATCTCTGGGAGCAGGAATTTCTATCTTTCGTGTCGTCTTTTACCCTTCTTTTGTGGTATAAAAAAGAGAGATTTTGTCGTATAAAAAAGAAGGATTGTAAGCGCCACCTTGTGGTTAGTGTTTCTTTGCTATTAGTATTGATTGGGAACCACAGTTTACAACACAGATTTGTAAACGTTGGAAAAAACAAACATGGGTTATTCGGTGCTTTTGTGACGAAAATTGGAGATGTTTGCTTGTTCTAGCTGCTGCTTTGATTGATGCATCCGAATACATGGTGTTTTATGATAACTATCTAAATGTGGATGTGTCAGAAATGATCCCACTTTTTAATCCATCGAACTTTTGTGATTATTGATGATTAGGACACGAGCACAATGGGTAGTTAAAAACTCTCAAAAGAGTATGTGGAGTTGTGGGTTCATGGTGGTATTCAAATCCTACAAGTTTCTTAGTCATCATATATGTTGAACAGGCAGTTGTGTAGATGAAATTAGGCGAGTTGTGTATTGGCTCATGTACTTCTAAGGAAAATAATGGTATGAACTGTACACTCAGTATAGGATTAGGTGGAATGGAGGATAGATTGAGATGATTAATCACTTTAACACATGCGGATTATACTGCTTGCGATTATTGCGATGCGAACTAAGTAACGTCGCCCTGAGAGCTTATCCTCAAAGTGGACAATATCATCCATTGTGGAGAGTCGTGTAGTTTCTCGAAACAAATAGAATACTGAGATGGTTTTGGATTACAGGCCAGTTTCTCCTGGCTCAAATTATTTCTTTTTTAACTTGAAGCCTGAAATCGTTTATGATGAATGATTCTGACTAAAATTCTACATGTTGTTCTCATTGACATTGAAACATTGAATTTGATTCATTGTGCAGACGAAGAAGGATGAGATGTCGATCTTCAAAATGAATCGAATTCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGACGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGGCCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTACCTCAAACAAGAATTTACTTGAACAACCTTATTACAAAACCCATTTTCCTATACAAACTTAGTCTATGTATTAATTTTCTTTTCCCAGTTGTTGTATGTTACAATCTGTTACAAGACAATAAGAATCGAACTTAGCCTCAAATTCCATTCGTTTGCTTACTAACCTCCTTCAAAACGCCAACCTGTGTCTGGAGAATAAAAAAGTAGTGGTATTCAGAGTATACCACCAGCTAAGTGTTATTTTCAATTGTTGTGGCTATCTGAAAATTTCAATCTATTGTTATACAGCAACAATGAAGCTTGGCCTCAAATTCCATTCCTTTGCTTACTTG

mRNA sequence

AGTAAATTAATGAATAAAAATAATTGTTTAAAATTTATGAAAAACATATTACTTTCAATACTTTAATTTCTATATTTTCAGCTTAGAAGAGGACACTTTTCTTGAAAACTTGAAGAGGGAGGTTTATTTATCCAAACGGAGAAAGTATCATCCCAAAATGAAGAAGATAGGACAACGATGACTACAATTCCATCACTCTCCTTTGCTTCACCTAGGATAGAGGTGAGGGTTGGAATTTCTCATGGATTTAACTCTCCTCCCCGGCTACAGGTGGCCGCCAGAAAGCAGGGAAATGGTGAAGGTGTCGGGCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGAGATGTCGATCTTCAAAATGAATCGAATTCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGACGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGGCCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTACCTCAAACAAGAATTTACTTGAACAACCTTATTACAAAACCCATTTTCCTATACAAACTTAGTCTATGTATTAATTTTCTTTTCCCAGTTGTTGTATGTTACAATCTGTTACAAGACAATAAGAATCGAACTTAGCCTCAAATTCCATTCGTTTGCTTACTAACCTCCTTCAAAACGCCAACCTGTGTCTGGAGAATAAAAAAGTAGTGGTATTCAGAGTATACCACCAGCTAAGTGTTATTTTCAATTGTTGTGGCTATCTGAAAATTTCAATCTATTGTTATACAGCAACAATGAAGCTTGGCCTCAAATTCCATTCCTTTGCTTACTTG

Coding sequence (CDS)

ATGACTACAATTCCATCACTCTCCTTTGCTTCACCTAGGATAGAGGTGAGGGTTGGAATTTCTCATGGATTTAACTCTCCTCCCCGGCTACAGGTGGCCGCCAGAAAGCAGGGAAATGGTGAAGGTGTCGGGCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGAGATGTCGATCTTCAAAATGAATCGAATTCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGACGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGGCCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTACCTCAAACAAGAATTTACTTGA

Homology

[Close]

BLAST of CmoCh16G000440 vs. Swiss-Prot
Match: PTA7_ARATH (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana GN=PTAC7 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-46
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 44  GRRVWRRRKLTKKDEMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVN 103
           GRRVWRRR LTKKD+M  +KM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN
Sbjct: 41  GRRVWRRRTLTKKDDMLRYKMQRVPFVEEQVRKIREVGKVMTMDIEQLLLREDNRFEFVN 100

Query: 104 EVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEF 163
            VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +
Sbjct: 101 SVAAEATEYVDKNRDEYGGSKKAIFHVLSNRVNDLGFDRPEAYVEADPYKPGPGYLLEYY 160

Query: 164 T 165
           T
Sbjct: 161 T 161

[Close]

BLAST of CmoCh16G000440 vs. TrEMBL
Match: A0A0A0L9J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238200 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-67
Identity = 136/167 (81.44%), Postives = 146/167 (87.43%), Query Frame = 1


Query: 2   TTIPSLSFASP----RIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKD 61
           T I +LSFASP    RIE    IS   N  P  Q+ ARKQ +GE  GRRVWRRRKLTKKD
Sbjct: 3   TPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKD 62

Query: 62  EMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNR 121
           +MSI+KM+RIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+NR
Sbjct: 63  DMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNR 122

Query: 122 DEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           DEYGG+KKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLKQEFT
Sbjct: 123 DEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT 169

[Close]

BLAST of CmoCh16G000440 vs. TrEMBL
Match: A0A0D2Q2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G267700 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-55
Identity = 110/138 (79.71%), Postives = 121/138 (87.68%), Query Frame = 1


Query: 27  PPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEMSIFKMNRIPFLEEQVRKVKEQGKLITM 86
           PP L  +   +   EG GRRVWRRRKL KKDEM  +K+ R+PFLEEQVRK++E GKL+TM
Sbjct: 16  PPSLLKSVVSRLKSEGGGRRVWRRRKLAKKDEMLQYKLERMPFLEEQVRKIREGGKLLTM 75

Query: 87  DIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAY 146
           DIERLLLSEDNRFDFVN+VAAEAKEYVENNRDEYGGSKKAILHVLSNRVND+GFYRPDAY
Sbjct: 76  DIERLLLSEDNRFDFVNDVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDSGFYRPDAY 135

Query: 147 AEEDPFKPGPHYLKQEFT 165
           AE DPFKPGP YLK+EFT
Sbjct: 136 AESDPFKPGPTYLKEEFT 153

[Close]

BLAST of CmoCh16G000440 vs. TrEMBL
Match: A0A0B0MTV6_GOSAR (Putative nicotinate-nucleotide adenylyltransferase OS=Gossypium arboreum GN=F383_10117 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-55
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 21  SHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEMSIFKMNRIPFLEEQVRKVKEQ 80
           +H  NS    QV +R +   EG GRRVWRRRKL KKDEM  +K+ R+PFLEEQVRK++E 
Sbjct: 36  THHLNS----QVVSRLKS--EGGGRRVWRRRKLAKKDEMLQYKLERMPFLEEQVRKIREG 95

Query: 81  GKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGF 140
           GKL+TMDIERLLLSEDNRFDFVN+VAAEAKEYVENNRDEYGGSKKAILHVLSNRVND+GF
Sbjct: 96  GKLLTMDIERLLLSEDNRFDFVNDVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDSGF 155

Query: 141 YRPDAYAEEDPFKPGPHYLKQEFT 165
           YRPDAYAE DPFKPGP YLK+EFT
Sbjct: 156 YRPDAYAESDPFKPGPTYLKEEFT 173

[Close]

BLAST of CmoCh16G000440 vs. TrEMBL
Match: W9S9X1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011865 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-55
Identity = 115/165 (69.70%), Postives = 133/165 (80.61%), Query Frame = 1


Query: 2   TTIP-SLSFAS-PRIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEM 61
           +T+P +LS AS PRIE+R G S   N   R Q     Q   +  GRRVWRRRKLTKKD+M
Sbjct: 4   STLPFTLSPASRPRIELRAGNSMACNCSFRSQPLVLSQMKKDSRGRRVWRRRKLTKKDDM 63

Query: 62  SIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDE 121
             +K+ R+PFLEEQVRK+++ GKL+TMD+ERLLLSE+NRFDFVNE+AAEA EYV NNRDE
Sbjct: 64  LRYKLERVPFLEEQVRKIQDDGKLLTMDLERLLLSEENRFDFVNEIAAEATEYVVNNRDE 123

Query: 122 YGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           YGG KKAILHV+SNRVNDAGFYRPDAYAE DP+KPGP YLKQ FT
Sbjct: 124 YGGQKKAILHVISNRVNDAGFYRPDAYAETDPYKPGPSYLKQYFT 168

[Close]

BLAST of CmoCh16G000440 vs. TrEMBL
Match: A0A061G1Y5_THECC (Plastid transcriptionally active7 isoform 1 OS=Theobroma cacao GN=TCM_015438 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-54
Identity = 111/159 (69.81%), Postives = 130/159 (81.76%), Query Frame = 1


Query: 8   SFASPRIEVRVGISHGFNSPPRLQVAAR--KQGNGEGVGRRVWRRRKLTKKDEMSIFKMN 67
           S  SP ++     ++ +   P L+   R   +   EG GRRVWRRRKLTKKDEM  +K+ 
Sbjct: 13  SSISPLLKTARAGTNSWRLNPNLKCQCRVVSRFESEGGGRRVWRRRKLTKKDEMLQYKLE 72

Query: 68  RIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKK 127
           RIPFLEEQVRK++E GKL+TMDIERLLLSEDNRFDFVN+VAAEAK+Y+E+NRDEYGG+KK
Sbjct: 73  RIPFLEEQVRKIREGGKLLTMDIERLLLSEDNRFDFVNDVAAEAKDYIESNRDEYGGTKK 132

Query: 128 AILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           AILHVLSNRVND+GFYRPDAYAE DPFKPGP YLK+EFT
Sbjct: 133 AILHVLSNRVNDSGFYRPDAYAESDPFKPGPTYLKEEFT 171

[Close]

BLAST of CmoCh16G000440 vs. TAIR10
Match: AT5G24314.2 (AT5G24314.2 plastid transcriptionally active7)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-45
Identity = 89/129 (68.99%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 44  GRRVWRRRKL--------TKKDEMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSE 103
           GRRVWRRR L        TKKD+M  +KM R+PF+EEQVRK++E GK++TMDIE+LLL E
Sbjct: 41  GRRVWRRRTLVSTKLDILTKKDDMLRYKMQRVPFVEEQVRKIREVGKVMTMDIEQLLLRE 100

Query: 104 DNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPG 163
           DNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPG
Sbjct: 101 DNRFEFVNSVAAEATEYVDKNRDEYGGSKKAIFHVLSNRVNDLGFDRPEAYVEADPYKPG 160

Query: 164 PHYLKQEFT 165
           P YL + +T
Sbjct: 161 PGYLLEYYT 169

[Close]

BLAST of CmoCh16G000440 vs. NCBI nr
Match: gi|659111938|ref|XP_008455984.1| (PREDICTED: uncharacterized protein LOC103496049 [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-68
Identity = 139/167 (83.23%), Postives = 146/167 (87.43%), Query Frame = 1


Query: 2   TTIPSLSFASP----RIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKD 61
           T I +LSFASP    RIE    IS   N  P  QV ARKQ NGE  GRRVWRRRKLTKKD
Sbjct: 3   TPISTLSFASPFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKD 62

Query: 62  EMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNR 121
           +MSI+KM+RIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+NR
Sbjct: 63  DMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNR 122

Query: 122 DEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           DEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLKQEFT
Sbjct: 123 DEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT 169

[Close]

BLAST of CmoCh16G000440 vs. NCBI nr
Match: gi|449456989|ref|XP_004146231.1| (PREDICTED: uncharacterized protein LOC101217841 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.5e-67
Identity = 136/167 (81.44%), Postives = 146/167 (87.43%), Query Frame = 1


Query: 2   TTIPSLSFASP----RIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKD 61
           T I +LSFASP    RIE    IS   N  P  Q+ ARKQ +GE  GRRVWRRRKLTKKD
Sbjct: 3   TPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKD 62

Query: 62  EMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNR 121
           +MSI+KM+RIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+NR
Sbjct: 63  DMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNR 122

Query: 122 DEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           DEYGG+KKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLKQEFT
Sbjct: 123 DEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT 169

[Close]

BLAST of CmoCh16G000440 vs. NCBI nr
Match: gi|1009138528|ref|XP_015886635.1| (PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 225.3 bits (573), Expect = 7.6e-56
Identity = 117/168 (69.64%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 3   TIP-SLSFASPRIEVRVGISHGFN-----SPPRLQVAARKQGNGEGVGRRVWRRRKLTKK 62
           T+P +LS A  RIE+R G S  F+         LQ+ ++ + +G+G  RRVWRRRKLTKK
Sbjct: 5   TLPVTLSPALSRIEMRAGNSFAFSFSCSSRTQNLQIVSQMKKDGKG--RRVWRRRKLTKK 64

Query: 63  DEMSIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENN 122
           D+M  +KM R+PFLEEQVRK++E GKL+TMDIERL+LSEDNRFDFVNE+AAEA EYVE+N
Sbjct: 65  DDMLDYKMERVPFLEEQVRKIQEGGKLLTMDIERLMLSEDNRFDFVNEIAAEANEYVESN 124

Query: 123 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           RDEYGGSKKAILHVLSNRVND+GFYRP+AYAE DPFKPGP YLK+EFT
Sbjct: 125 RDEYGGSKKAILHVLSNRVNDSGFYRPEAYAESDPFKPGPSYLKEEFT 170

[Close]

BLAST of CmoCh16G000440 vs. NCBI nr
Match: gi|763785491|gb|KJB52562.1| (hypothetical protein B456_008G267700 [Gossypium raimondii])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 110/138 (79.71%), Postives = 121/138 (87.68%), Query Frame = 1


Query: 27  PPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEMSIFKMNRIPFLEEQVRKVKEQGKLITM 86
           PP L  +   +   EG GRRVWRRRKL KKDEM  +K+ R+PFLEEQVRK++E GKL+TM
Sbjct: 16  PPSLLKSVVSRLKSEGGGRRVWRRRKLAKKDEMLQYKLERMPFLEEQVRKIREGGKLLTM 75

Query: 87  DIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAY 146
           DIERLLLSEDNRFDFVN+VAAEAKEYVENNRDEYGGSKKAILHVLSNRVND+GFYRPDAY
Sbjct: 76  DIERLLLSEDNRFDFVNDVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDSGFYRPDAY 135

Query: 147 AEEDPFKPGPHYLKQEFT 165
           AE DPFKPGP YLK+EFT
Sbjct: 136 AESDPFKPGPTYLKEEFT 153

[Close]

BLAST of CmoCh16G000440 vs. NCBI nr
Match: gi|703148040|ref|XP_010109243.1| (hypothetical protein L484_011865 [Morus notabilis])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 115/165 (69.70%), Postives = 133/165 (80.61%), Query Frame = 1


Query: 2   TTIP-SLSFAS-PRIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEM 61
           +T+P +LS AS PRIE+R G S   N   R Q     Q   +  GRRVWRRRKLTKKD+M
Sbjct: 4   STLPFTLSPASRPRIELRAGNSMACNCSFRSQPLVLSQMKKDSRGRRVWRRRKLTKKDDM 63

Query: 62  SIFKMNRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDE 121
             +K+ R+PFLEEQVRK+++ GKL+TMD+ERLLLSE+NRFDFVNE+AAEA EYV NNRDE
Sbjct: 64  LRYKLERVPFLEEQVRKIQDDGKLLTMDLERLLLSEENRFDFVNEIAAEATEYVVNNRDE 123

Query: 122 YGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165
           YGG KKAILHV+SNRVNDAGFYRPDAYAE DP+KPGP YLKQ FT
Sbjct: 124 YGGQKKAILHVISNRVNDAGFYRPDAYAETDPYKPGPSYLKQYFT 168

The following BLAST results are available for this feature:

BLAST of CmoCh16G000440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTA7_ARATH	3.2e-46	73.55	Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana GN=PTAC7 PE=1...	[more]

BLAST of CmoCh16G000440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9J8_CUCSA	1.8e-67	81.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238200 PE=4 SV=1	[more]
A0A0D2Q2J5_GOSRA	2.6e-55	79.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G267700 PE=4 SV=1	[more]
A0A0B0MTV6_GOSAR	7.7e-55	78.47	Putative nicotinate-nucleotide adenylyltransferase OS=Gossypium arboreum GN=F383...	[more]
W9S9X1_9ROSA	7.7e-55	69.70	Uncharacterized protein OS=Morus notabilis GN=L484_011865 PE=4 SV=1	[more]
A0A061G1Y5_THECC	1.7e-54	69.81	Plastid transcriptionally active7 isoform 1 OS=Theobroma cacao GN=TCM_015438 PE=...	[more]

BLAST of CmoCh16G000440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24314.2	2.9e-45	68.99	plastid transcriptionally active7	[more]

BLAST of CmoCh16G000440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111938\|ref\|XP_008455984.1\|	1.3e-68	83.23	PREDICTED: uncharacterized protein LOC103496049 [Cucumis melo]	[more]
gi\|449456989\|ref\|XP_004146231.1\|	2.5e-67	81.44	PREDICTED: uncharacterized protein LOC101217841 [Cucumis sativus]	[more]
gi\|1009138528\|ref\|XP_015886635.1\|	7.6e-56	69.64	PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Ziziphus jujub...	[more]
gi\|763785491\|gb\|KJB52562.1\|	3.8e-55	79.71	hypothetical protein B456_008G267700 [Gossypium raimondii]	[more]
gi\|703148040\|ref\|XP_010109243.1\|	1.1e-54	69.70	hypothetical protein L484_011865 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0010286	heat acclimation
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G000440.1	CmoCh16G000440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37257	FAMILY NOT NAMED	coord: 44..164 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G000440	Cucsa.032280	Cucumber (Gy14) v1	cgycmoB0007
CmoCh16G000440	CmaCh16G000380	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G000440	Cla004268	Watermelon (97103) v1	cmowmB310
CmoCh16G000440	Csa3G238200	Cucumber (Chinese Long) v2	cmocuB310
CmoCh16G000440	MELO3C019372	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G000440	ClCG05G009050	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G000440	CSPI03G19680	Wild cucumber (PI 183967)	cmocpiB318
CmoCh16G000440	Cp4.1LG14g06770	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G000440	MELO3C019371.2	Melon (DHL92) v3.6.1	cmomedB334
CmoCh16G000440	CsaV3_3G019730	Cucumber (Chinese Long) v3	cmocucB0373
CmoCh16G000440	Cla97C05G091370	Watermelon (97103) v2	cmowmbB331
CmoCh16G000440	Bhi01G001127	Wax gourd	cmowgoB0435
CmoCh16G000440	CsGy3G019600	Cucumber (Gy14) v2	cgybcmoB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G000440	Melon (DHL92) v3.6.1	cmomedB312
CmoCh16G000440	Silver-seed gourd	carcmoB0692
CmoCh16G000440	Silver-seed gourd	carcmoB0730
CmoCh16G000440	Silver-seed gourd	carcmoB0731
CmoCh16G000440	Silver-seed gourd	carcmoB1326
CmoCh16G000440	Cucumber (Chinese Long) v3	cmocucB0374
CmoCh16G000440	Cucumber (Chinese Long) v3	cmocucB0398
CmoCh16G000440	Watermelon (97103) v2	cmowmbB307
CmoCh16G000440	Wax gourd	cmowgoB0424
CmoCh16G000440	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G000440	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh16G000440	Cucurbita moschata (Rifu)	cmocmoB274
CmoCh16G000440	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh16G000440	Cucumber (Gy14) v1	cgycmoB0601
CmoCh16G000440	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G000440	Cucurbita maxima (Rimu)	cmacmoB404
CmoCh16G000440	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G000440	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G000440	Wild cucumber (PI 183967)	cmocpiB337
CmoCh16G000440	Cucumber (Chinese Long) v2	cmocuB329
CmoCh16G000440	Melon (DHL92) v3.5.1	cmomeB275
CmoCh16G000440	Watermelon (Charleston Gray)	cmowcgB282
CmoCh16G000440	Watermelon (97103) v1	cmowmB312
CmoCh16G000440	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G000440	Cucurbita pepo (Zucchini)	cmocpeB304
CmoCh16G000440	Cucurbita pepo (Zucchini)	cmocpeB306
CmoCh16G000440	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G000440	Bottle gourd (USVL1VR-Ls)	cmolsiB286
CmoCh16G000440	Bottle gourd (USVL1VR-Ls)	cmolsiB307
CmoCh16G000440	Cucumber (Gy14) v2	cgybcmoB594