CmoCh15G006490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Embryo defective 2170
Location	Cmo_Chr15 : 3147464 .. 3148558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCCCCTCCTCTCTCCTCCTATACCCTCCTCTGCCCCTCTAGCTTCAAACGCCGCACCACACGGGATCTCCTCTGCTTCTCTCTCTGTTTCAAGTTTCTTCTACATCCATGGGAAACCCTATCCATACAGCCGAAGACTGCATCATTTTCAGGGGCTGGGACAGTGCCGCCGGGGACGATGACTCTCAATCGGAGTCCGGCGTTTGTTCGCCCACGCTCTGGGGTTCTAATTCTCGAACCAACCTTCAATTTCACCGCCCGCGTAATCGCAGCCTCTCGCCGACGTCTCGGACACAAGCTATAGCCAGAGGGCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCGGAATCCTCCTACGAGCTATCTCTTAAGGATCTTGTTGAACACCATTTGAGTAATTCGGAGCGGCAAGACGGCGATGCCTCGCTTTCGCGAGACGATTCCGCCTCTGAAACTTCCTTCCGAAGGGACACAAGCAAGACGAGGAGTGAAACTAGGGCGTTGGTTACCAGAAGTAGAAGCGTCGATAGCGGTGGATTTTACCTAAAAATGTTCCTCCCGCTGCCTTTCGGGCAGATGTCGGCCAAAAAGAAGAGGAATCTTAGAACCGATTCGGGGTTGAATAGCAGTTCAAGAGTGTCGCCTAAACCGCCGCCGGTGGACAGAGAGTGGTGGAGGAAGCGATCGAATGAGGGGAGCGTATCCGGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAGGTAACCAACCAAATCAAATTGTTCATCAATCCAGACAAAAAAAAAAACCCCCCAATTTCATGAATCTCAAGATTATCTGTTTGATTGTGATGAATTTGATGTGCAGGAATTCAGAATCGCAAGGAGGTTGCTGGTTTTGTATCAGTCCAATGAGGAGTAAAGATCCAGAGTAGAACAGCTTCCATTGAAAGTATTCAAATGAAATGAATCTTCTTAATATGTAATCTTCTCTAAATCACAGCTGAATTTTGCAGCTAAGCTTGTTTATATGTTTTCTTATCTGTATTTTGATTTCCATATGTATATGTATATTTTCAACCAAGAATTCACCTGTTTTTTCCTCCCAC

mRNA sequence

TCTCCCCCTCCTCTCTCCTCCTATACCCTCCTCTGCCCCTCTAGCTTCAAACGCCGCACCACACGGGATCTCCTCTGCTTCTCTCTCTGTTTCAAGTTTCTTCTACATCCATGGGAAACCCTATCCATACAGCCGAAGACTGCATCATTTTCAGGGGCTGGGACAGTGCCGCCGGGGACGATGACTCTCAATCGGAGTCCGGCGTTTGTTCGCCCACGCTCTGGGGTTCTAATTCTCGAACCAACCTTCAATTTCACCGCCCGCGTAATCGCAGCCTCTCGCCGACGTCTCGGACACAAGCTATAGCCAGAGGGCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCGGAATCCTCCTACGAGCTATCTCTTAAGGATCTTGTTGAACACCATTTGAGTAATTCGGAGCGGCAAGACGGCGATGCCTCGCTTTCGCGAGACGATTCCGCCTCTGAAACTTCCTTCCGAAGGGACACAAGCAAGACGAGGAGTGAAACTAGGGCGTTGGTTACCAGAAGTAGAAGCGTCGATAGCGGTGGATTTTACCTAAAAATGTTCCTCCCGCTGCCTTTCGGGCAGATGTCGGCCAAAAAGAAGAGGAATCTTAGAACCGATTCGGGGTTGAATAGCAGTTCAAGAGTGTCGCCTAAACCGCCGCCGGTGGACAGAGAGTGGTGGAGGAAGCGATCGAATGAGGGGAGCGTATCCGGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAGGAATTCAGAATCGCAAGGAGGTTGCTGGTTTTGTATCAGTCCAATGAGGAGTAAAGATCCAGAGTAGAACAGCTTCCATTGAAAGTATTCAAATGAAATGAATCTTCTTAATATGTAATCTTCTCTAAATCACAGCTGAATTTTGCAGCTAAGCTTGTTTATATGTTTTCTTATCTGTATTTTGATTTCCATATGTATATGTATATTTTCAACCAAGAATTCACCTGTTTTTTCCTCCCAC

Coding sequence (CDS)

ATGGGAAACCCTATCCATACAGCCGAAGACTGCATCATTTTCAGGGGCTGGGACAGTGCCGCCGGGGACGATGACTCTCAATCGGAGTCCGGCGTTTGTTCGCCCACGCTCTGGGGTTCTAATTCTCGAACCAACCTTCAATTTCACCGCCCGCGTAATCGCAGCCTCTCGCCGACGTCTCGGACACAAGCTATAGCCAGAGGGCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCGGAATCCTCCTACGAGCTATCTCTTAAGGATCTTGTTGAACACCATTTGAGTAATTCGGAGCGGCAAGACGGCGATGCCTCGCTTTCGCGAGACGATTCCGCCTCTGAAACTTCCTTCCGAAGGGACACAAGCAAGACGAGGAGTGAAACTAGGGCGTTGGTTACCAGAAGTAGAAGCGTCGATAGCGGTGGATTTTACCTAAAAATGTTCCTCCCGCTGCCTTTCGGGCAGATGTCGGCCAAAAAGAAGAGGAATCTTAGAACCGATTCGGGGTTGAATAGCAGTTCAAGAGTGTCGCCTAAACCGCCGCCGGTGGACAGAGAGTGGTGGAGGAAGCGATCGAATGAGGGGAGCGTATCCGGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAGGAATTCAGAATCGCAAGGAGGTTGCTGGTTTTGTATCAGTCCAATGAGGAGTAAAGATCCAGAGTAG

Homology

[Close]

BLAST of CmoCh15G006490 vs. TrEMBL
Match: A0A0A0KCW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G349820 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.4e-97
Identity = 204/250 (81.60%), Postives = 216/250 (86.40%), Query Frame = 1


Query: 3   NPIHTAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFH-RPRNRSLSPTS 62
           +P H +EDCIIFRGWDSAA  DDDSQSESGV SPTLW SNSRT  QFH R RNRSLSPTS
Sbjct: 18  SPEHNSEDCIIFRGWDSAAAIDDDSQSESGVSSPTLWASNSRTTPQFHHRHRNRSLSPTS 77

Query: 63  RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSERQ-DGD-ASLSRDDSASETS 122
           RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+RQ DGD ASL+RDDS+SETS
Sbjct: 78  RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDVASLTRDDSSSETS 137

Query: 123 FRRDTSKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRV 182
           FRRD SK R ETRALVTRSRSVDSGGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRV
Sbjct: 138 FRRDPSKNRGETRALVTRSRSVDSGGFYLKMFFPLPFGQVSAKKKNNLRTDSGLSGSSRV 197

Query: 183 SPKPPPVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFC 235
           SPKPPPVD++WWRKRS      N+GS+SG      GSSNSTSSER  SRNSESQG CWFC
Sbjct: 198 SPKPPPVDKDWWRKRSSVSGGENDGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFC 257

[Close]

BLAST of CmoCh15G006490 vs. TrEMBL
Match: I1KAG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G119800 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 104/245 (42.45%), Postives = 138/245 (56.33%), Query Frame = 1


Query: 17  WDSAAGDDDSQ-SESGVCSPTLWGSNSRTNLQFHRPRN-RSLSPTSRTQAIARGQQELME 76
           W S    ++ +  +SG+CSP +W     T     R  N RSLSPTSRTQAI  GQ+ELME
Sbjct: 35  WPSKPAFEEVEVDDSGICSPPMW-----TTSPARRKNNLRSLSPTSRTQAIVSGQRELME 94

Query: 77  MVRNMPESSYELSLKDLVEHH-LSNSERQDGDASLSRDDSASETSFRRDTSKTRSETR-A 136
           MV+NMPES+YELSLKDLVEHH + ++ RQ+ +    R + +S    R  + K  +  + A
Sbjct: 95  MVKNMPESNYELSLKDLVEHHRVVDATRQEKNVVEERKNLSSVYMKREKSRKVDNNNKMA 154

Query: 137 LVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDS-GLNSSSRVSPKPPP------- 196
            V R+ ++D GGFYLKM LP PFG    KKK   + +S G +SSSRV+PKP         
Sbjct: 155 QVKRNGNIDRGGFYLKMGLPFPFGSKDKKKKMKKKNESLGNSSSSRVTPKPSDGSAKGGG 214

Query: 197 -VDREWWRK---------------RSNEGSVSGGSSNSTSSERSRNSESQGG--CWFCIS 232
            VD+EWW+K                S  G  SG SS+++SS RS +     G  CW  I 
Sbjct: 215 VVDKEWWKKSPLACKESDSGESSINSESGKSSGSSSSNSSSSRSNSRRENSGKRCWPFIR 274

[Close]

BLAST of CmoCh15G006490 vs. TrEMBL
Match: A0A0B2SQ46_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_018330 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 104/252 (41.27%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 17  WDSAAGDDDSQ-SESGVCSPTLWGSNS---RTNLQFHRPRNR-----SLSPTSRTQAIAR 76
           W S    ++ +  +SG+CSP +W ++    + NL+   P +R     SLSPTSRTQAI  
Sbjct: 35  WPSKPAFEEVEVDDSGICSPPMWTTSPARRKNNLRSLSPTSRTQAIGSLSPTSRTQAIVS 94

Query: 77  GQQELMEMVRNMPESSYELSLKDLVEHH-LSNSERQDGDASLSRDDSASETSFRRDTSKT 136
           GQ+ELMEMV+NMPES+YELSLKDLVEHH + ++ RQ+ +    R + +S    R  + K 
Sbjct: 95  GQRELMEMVKNMPESNYELSLKDLVEHHRVVDATRQEKNVVEERKNLSSVYMKREKSRKV 154

Query: 137 RSETR-ALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDS-GLNSSSRVSPKPPP 196
            +  + A V R+ ++D GGFYLKM LP PFG    KKK   + +S G +SSSRV+PKP  
Sbjct: 155 DNNNKMAQVKRNGNIDRGGFYLKMGLPFPFGSKDKKKKMKKKNESLGNSSSSRVTPKPSD 214

Query: 197 --------VDREWWRK---------------RSNEGSVSGGSSNSTSSERSRNSESQGG- 232
                   VD+EWW+K                S  G  SG SS+++SS RS +     G 
Sbjct: 215 GSAKGGGVVDKEWWKKSPLACKESDSGESSINSESGKSSGSSSSNSSSSRSNSRRENSGK 274

[Close]

BLAST of CmoCh15G006490 vs. TrEMBL
Match: A0A0L9UF29_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g168800 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 93/207 (44.93%), Postives = 120/207 (57.97%), Query Frame = 1


Query: 26  SQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYE 85
           +Q +SG+CSP +W     T+    +  +RSLSPTSRTQAI RGQ+ELMEMV+NMPES+YE
Sbjct: 45  NQDDSGICSPPMW----TTSPPHSKTDHRSLSPTSRTQAIVRGQRELMEMVKNMPESTYE 104

Query: 86  LSLKDLVEHHLSNSERQD--GDASLSRDDSASETSFRRDTSKTRSETRALVTRSRSVDSG 145
           LSLKDLVEHH   +  +D       +RD S      R    K        V R+R++D G
Sbjct: 105 LSLKDLVEHHRLETAVEDRRNLTVYNRDKSTG----RVGVGKRVDNKMTQVKRNRNIDRG 164

Query: 146 GFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP-----PVDREWWRKR----- 205
           GFYLKM LP   G     K    +++S  NSSSRV+PKP       VD+EWW+K      
Sbjct: 165 GFYLKMGLPFSLGSKDKSKSNKKKSESSGNSSSRVTPKPDGSTKGGVDKEWWKKSPSAYK 224

Query: 206 ---SNEGSVSGGSSNSTSSERSRNSES 218
              S E S++ GSS S+ S  S ++ S
Sbjct: 225 GSDSGESSINSGSSKSSGSSSSNSNSS 243

[Close]

BLAST of CmoCh15G006490 vs. TrEMBL
Match: A0A0S3RDN6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G145000 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 93/207 (44.93%), Postives = 120/207 (57.97%), Query Frame = 1


Query: 26  SQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYE 85
           +Q +SG+CSP +W     T+    +  +RSLSPTSRTQAI RGQ+ELMEMV+NMPES+YE
Sbjct: 45  NQDDSGICSPPMW----TTSPPHSKTDHRSLSPTSRTQAIVRGQRELMEMVKNMPESTYE 104

Query: 86  LSLKDLVEHHLSNSERQD--GDASLSRDDSASETSFRRDTSKTRSETRALVTRSRSVDSG 145
           LSLKDLVEHH   +  +D       +RD S      R    K        V R+R++D G
Sbjct: 105 LSLKDLVEHHRLETAVEDRRNLTVYNRDKSTG----RVGVGKRVDNKMTQVKRNRNIDRG 164

Query: 146 GFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP-----PVDREWWRKR----- 205
           GFYLKM LP   G     K    +++S  NSSSRV+PKP       VD+EWW+K      
Sbjct: 165 GFYLKMGLPFSLGSKDKSKSNKKKSESSGNSSSRVTPKPDGSTKGGVDKEWWKKSPSAYK 224

Query: 206 ---SNEGSVSGGSSNSTSSERSRNSES 218
              S E S++ GSS S+ S  S ++ S
Sbjct: 225 GSDSGESSINSGSSKSSGSSSSNSNSS 243

[Close]

BLAST of CmoCh15G006490 vs. TAIR10
Match: AT1G21390.1 (AT1G21390.1 embryo defective 2170)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-25
Identity = 86/200 (43.00%), Postives = 116/200 (58.00%), Query Frame = 1


Query: 24  DDSQSESGVCSPTLWGSNS-RTNLQFHRPRNR-SLSPTSRTQAIARGQQELMEMVRNMPE 83
           +D  S+SGVCSPTLW ++  ++   FHRP +  SLSP S+ QAIARGQ+ELMEMV  MPE
Sbjct: 21  NDDHSDSGVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSKMPE 80

Query: 84  SSYELSLKDLVEHHLS-NSERQDGDASLSRDDSASETSFRRDTSKTRSETRALVTRSRSV 143
           S YELSLKDLVE  ++  +ER+  D    R +  S+        KT+S+ R    RS   
Sbjct: 81  SCYELSLKDLVEVKVNQENERKVFDELPKRANRQSKV-----VRKTKSDKRVDPNRSGGG 140

Query: 144 DSGGFYLKMFLPLPFGQM--SAKKKRNLRTDSGLNSSSRVSPKPPPV---DREWWRKRSN 203
           ++ GF LK+   +  G M  + KKK+  + D     S R S     V   D+EWW + S 
Sbjct: 141 NNSGFLLKIMFLVSLGAMKDTTKKKKKKKKDEACKVSPRPSISEETVKVEDKEWWNRMSE 200

Query: 204 EGSVSGGSSNSTSSERSRNS 216
             +   GSS+S +S RSR+S
Sbjct: 201 SSTKRSGSSSSNNSIRSRSS 215

[Close]

BLAST of CmoCh15G006490 vs. TAIR10
Match: AT1G76980.1 (AT1G76980.1 BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1))

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-21
Identity = 83/220 (37.73%), Postives = 115/220 (52.27%), Query Frame = 1


Query: 25  DSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSY 84
           D  S+SGVCSP LW ++   +        ++LSP ++ Q IARGQ+ELM+MV  MPES Y
Sbjct: 22  DDHSDSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCY 81

Query: 85  ELSLKDLVEHHLSNSERQDGDASLSRDDSASETSFRRDTSKTRSETRALVTRSRSVDSGG 144
           ELSLKDLVE  ++  E +  D    R     E   R+   KT+S+      R+  V++ G
Sbjct: 82  ELSLKDLVE--VNTEEEKVFDEMPQR-----EKKPRKVVRKTKSDKWVDPIRNGGVNNSG 141

Query: 145 FYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRV-------SPKP-------PPVDREWW 204
           F LK+  P+  G   AKKK N + D+  + SS         SP+P          D++WW
Sbjct: 142 FLLKLVFPVSLG---AKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKDWW 201

Query: 205 R-------------KRSNEGS--VSGGSSNSTSSERSRNS 216
           +              R N GS   SGGSS+ ++S+RSRNS
Sbjct: 202 KDGLSESRRSQSVVSRINSGSSKSSGGSSSRSNSDRSRNS 231

[Close]

BLAST of CmoCh15G006490 vs. NCBI nr
Match: gi|659081933|ref|XP_008441584.1| (PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 3.0e-98
Identity = 204/249 (81.93%), Postives = 215/249 (86.35%), Query Frame = 1


Query: 3   NPIHTAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSR 62
           +P H +EDCIIFRGWDSAA  DDDSQSESGV SPTLW SNSRT  QFHR RNRSLSPTSR
Sbjct: 23  SPEHNSEDCIIFRGWDSAAAIDDDSQSESGVSSPTLWASNSRTTPQFHRHRNRSLSPTSR 82

Query: 63  TQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSERQ-DGD-ASLSRDDSASETSF 122
           TQAIARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+RQ DG  ASLSRDDS+SETSF
Sbjct: 83  TQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGAVASLSRDDSSSETSF 142

Query: 123 RRDTSKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVS 182
           RRD SK R ETRALVTRSRSVDSGGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVS
Sbjct: 143 RRDPSKNRGETRALVTRSRSVDSGGFYLKMFFPLPFGQVSAKKKNNLRTDSGLSGSSRVS 202

Query: 183 PKPPPVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFCI 235
           PKPPPVD++WWRKRS      N+GS+SG      GSSNSTSSER  SRNSESQG CWFCI
Sbjct: 203 PKPPPVDKDWWRKRSSVSGGENDGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCI 262

[Close]

BLAST of CmoCh15G006490 vs. NCBI nr
Match: gi|449453013|ref|XP_004144253.1| (PREDICTED: uncharacterized protein LOC101219576 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 2.0e-97
Identity = 204/250 (81.60%), Postives = 216/250 (86.40%), Query Frame = 1


Query: 3   NPIHTAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFH-RPRNRSLSPTS 62
           +P H +EDCIIFRGWDSAA  DDDSQSESGV SPTLW SNSRT  QFH R RNRSLSPTS
Sbjct: 18  SPEHNSEDCIIFRGWDSAAAIDDDSQSESGVSSPTLWASNSRTTPQFHHRHRNRSLSPTS 77

Query: 63  RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSERQ-DGD-ASLSRDDSASETS 122
           RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+RQ DGD ASL+RDDS+SETS
Sbjct: 78  RTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDVASLTRDDSSSETS 137

Query: 123 FRRDTSKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRV 182
           FRRD SK R ETRALVTRSRSVDSGGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRV
Sbjct: 138 FRRDPSKNRGETRALVTRSRSVDSGGFYLKMFFPLPFGQVSAKKKNNLRTDSGLSGSSRV 197

Query: 183 SPKPPPVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFC 235
           SPKPPPVD++WWRKRS      N+GS+SG      GSSNSTSSER  SRNSESQG CWFC
Sbjct: 198 SPKPPPVDKDWWRKRSSVSGGENDGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFC 257

[Close]

BLAST of CmoCh15G006490 vs. NCBI nr
Match: gi|951059060|ref|XP_014522319.1| (PREDICTED: uncharacterized protein LOC106778838 [Vigna radiata var. radiata])

HSP 1 Score: 150.2 bits (378), Expect = 4.5e-33
Identity = 102/231 (44.16%), Postives = 134/231 (58.01%), Query Frame = 1


Query: 26  SQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYE 85
           +Q +SG+CSP +W     T+    +  +RSLSPTSRTQAI RGQ+ELMEMV+NMPES+YE
Sbjct: 45  NQDDSGICSPPMW----TTSPPHSKTDHRSLSPTSRTQAIVRGQRELMEMVKNMPESNYE 104

Query: 86  LSLKDLVEHHLSNSERQDGDASLSRDDSASETSFRRDTS---KTRSETRALVTRSRSVDS 145
           LSLKDLVEHH   +         + +D  + T ++RD S   K        V R+R++D 
Sbjct: 105 LSLKDLVEHHRLET---------AVEDRRNLTVYKRDKSGVGKRVDNKMTQVKRNRNIDR 164

Query: 146 GGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP-----PVDREWWRKR---- 205
           GGFYLKM LP   G     K    +++S  NSSSRV+PKP       VD+EWW+K     
Sbjct: 165 GGFYLKMGLPFSLGSKDKNKSNKKKSESSGNSSSRVTPKPDGSTKGGVDKEWWKKSPSAY 224

Query: 206 ----SNEGSVSGGSSNSTSSERSRNSES-------QGG--CWFCISPMRSK 232
               S E S++ GSS S+ S  S +S S       +GG  CWF IS  +S+
Sbjct: 225 KGSDSGESSINSGSSKSSGSSSSNSSNSRSNSRREKGGRLCWFFISRRKSQ 262

[Close]

BLAST of CmoCh15G006490 vs. NCBI nr
Match: gi|356515955|ref|XP_003526662.1| (PREDICTED: uncharacterized protein LOC100796235 [Glycine max])

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 104/245 (42.45%), Postives = 138/245 (56.33%), Query Frame = 1


Query: 17  WDSAAGDDDSQ-SESGVCSPTLWGSNSRTNLQFHRPRN-RSLSPTSRTQAIARGQQELME 76
           W S    ++ +  +SG+CSP +W     T     R  N RSLSPTSRTQAI  GQ+ELME
Sbjct: 35  WPSKPAFEEVEVDDSGICSPPMW-----TTSPARRKNNLRSLSPTSRTQAIVSGQRELME 94

Query: 77  MVRNMPESSYELSLKDLVEHH-LSNSERQDGDASLSRDDSASETSFRRDTSKTRSETR-A 136
           MV+NMPES+YELSLKDLVEHH + ++ RQ+ +    R + +S    R  + K  +  + A
Sbjct: 95  MVKNMPESNYELSLKDLVEHHRVVDATRQEKNVVEERKNLSSVYMKREKSRKVDNNNKMA 154

Query: 137 LVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDS-GLNSSSRVSPKPPP------- 196
            V R+ ++D GGFYLKM LP PFG    KKK   + +S G +SSSRV+PKP         
Sbjct: 155 QVKRNGNIDRGGFYLKMGLPFPFGSKDKKKKMKKKNESLGNSSSSRVTPKPSDGSAKGGG 214

Query: 197 -VDREWWRK---------------RSNEGSVSGGSSNSTSSERSRNSESQGG--CWFCIS 232
            VD+EWW+K                S  G  SG SS+++SS RS +     G  CW  I 
Sbjct: 215 VVDKEWWKKSPLACKESDSGESSINSESGKSSGSSSSNSSSSRSNSRRENSGKRCWPFIR 274

[Close]

BLAST of CmoCh15G006490 vs. NCBI nr
Match: gi|734433764|gb|KHN46963.1| (hypothetical protein glysoja_018330 [Glycine soja])

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 104/252 (41.27%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 17  WDSAAGDDDSQ-SESGVCSPTLWGSNS---RTNLQFHRPRNR-----SLSPTSRTQAIAR 76
           W S    ++ +  +SG+CSP +W ++    + NL+   P +R     SLSPTSRTQAI  
Sbjct: 35  WPSKPAFEEVEVDDSGICSPPMWTTSPARRKNNLRSLSPTSRTQAIGSLSPTSRTQAIVS 94

Query: 77  GQQELMEMVRNMPESSYELSLKDLVEHH-LSNSERQDGDASLSRDDSASETSFRRDTSKT 136
           GQ+ELMEMV+NMPES+YELSLKDLVEHH + ++ RQ+ +    R + +S    R  + K 
Sbjct: 95  GQRELMEMVKNMPESNYELSLKDLVEHHRVVDATRQEKNVVEERKNLSSVYMKREKSRKV 154

Query: 137 RSETR-ALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDS-GLNSSSRVSPKPPP 196
            +  + A V R+ ++D GGFYLKM LP PFG    KKK   + +S G +SSSRV+PKP  
Sbjct: 155 DNNNKMAQVKRNGNIDRGGFYLKMGLPFPFGSKDKKKKMKKKNESLGNSSSSRVTPKPSD 214

Query: 197 --------VDREWWRK---------------RSNEGSVSGGSSNSTSSERSRNSESQGG- 232
                   VD+EWW+K                S  G  SG SS+++SS RS +     G 
Sbjct: 215 GSAKGGGVVDKEWWKKSPLACKESDSGESSINSESGKSSGSSSSNSSSSRSNSRRENSGK 274

The following BLAST results are available for this feature:

BLAST of CmoCh15G006490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCW4_CUCSA	1.4e-97	81.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G349820 PE=4 SV=1	[more]
I1KAG8_SOYBN	1.1e-30	42.45	Uncharacterized protein OS=Glycine max GN=GLYMA_06G119800 PE=4 SV=1	[more]
A0A0B2SQ46_GLYSO	1.9e-30	41.27	Uncharacterized protein OS=Glycine soja GN=glysoja_018330 PE=4 SV=1	[more]
A0A0L9UF29_PHAAN	5.5e-30	44.93	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g168800 PE=4 SV=1	[more]
A0A0S3RDN6_PHAAN	5.5e-30	44.93	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G145000 PE=...	[more]

BLAST of CmoCh15G006490 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21390.1	2.1e-25	43.00	embryo defective 2170	[more]
AT1G76980.1	7.1e-21	37.73	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (T...	[more]

BLAST of CmoCh15G006490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081933\|ref\|XP_008441584.1\|	3.0e-98	81.93	PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo]	[more]
gi\|449453013\|ref\|XP_004144253.1\|	2.0e-97	81.60	PREDICTED: uncharacterized protein LOC101219576 [Cucumis sativus]	[more]
gi\|951059060\|ref\|XP_014522319.1\|	4.5e-33	44.16	PREDICTED: uncharacterized protein LOC106778838 [Vigna radiata var. radiata]	[more]
gi\|356515955\|ref\|XP_003526662.1\|	1.6e-30	42.45	PREDICTED: uncharacterized protein LOC100796235 [Glycine max]	[more]
gi\|734433764\|gb\|KHN46963.1\|	2.7e-30	41.27	hypothetical protein glysoja_018330 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006490.1	CmoCh15G006490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34193	FAMILY NOT NAMED	coord: 20..217 score: 3.0
None	No IPR available	PANTHER	PTHR34193:SF1	SUBFAMILY NOT NAMED	coord: 20..217 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006490	Cucsa.077240	Cucumber (Gy14) v1	cgycmoB0127
CmoCh15G006490	CmaCh15G006390	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006490	CmaCh04G024100	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006490	Cla013881	Watermelon (97103) v1	cmowmB250
CmoCh15G006490	Csa6G349820	Cucumber (Chinese Long) v2	cmocuB299
CmoCh15G006490	MELO3C008433	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006490	ClCG08G006250	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006490	CSPI06G18290	Wild cucumber (PI 183967)	cmocpiB308
CmoCh15G006490	Lsi08G005060	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006490	Cp4.1LG13g04230	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006490	Cp4.1LG01g20850	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006490	Cp4.1LG06g07800	Cucurbita pepo (Zucchini)	cmocpeB299
CmoCh15G006490	MELO3C008433.2	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006490	CsaV3_6G031200	Cucumber (Chinese Long) v3	cmocucB0361
CmoCh15G006490	Cla97C08G149030	Watermelon (97103) v2	cmowmbB302
CmoCh15G006490	Bhi04G001443	Wax gourd	cmowgoB0386
CmoCh15G006490	CsGy6G017790	Cucumber (Gy14) v2	cgybcmoB724
CmoCh15G006490	Carg01567	Silver-seed gourd	carcmoB1118
CmoCh15G006490	Carg15757	Silver-seed gourd	carcmoB0092

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G006490	CmoCh09G010790	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh15G006490	CmoCh04G025220	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:

None