CmoCh15G003850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G003850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger CONSTANS-LIKE 7-like protein
Location	Cmo_Chr15 : 1772324 .. 1773341 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAGAAGATCGAGAGAAATGAGCGTCAGCAATGAAATTTCCCTAATCAAGCATCCGATTCGTAAATCCAGAACCAAAACAAGACGACCCAAATTCCTCAGCTAATTTTTCCCCTGAAGATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTGTAAGATCAGTTTACTTCATTGAAAATCAGAGTTTTAGATGTGTTGATCTTCAAATTGTTTGGTGTTGATGCAGAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGTAACTTTTCTTCATCCTTCCTAATTTACCACCTCTTTTTACTTTTTACTATCCTTAATATTATGTGACTTTTCTACCCCTCTTTCAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACAAATAAGTGAAACTTTAGTGTTATTT

mRNA sequence

TTTAAAGAAGATCGAGAGAAATGAGCGTCAGCAATGAAATTTCCCTAATCAAGCATCCGATTCGTAAATCCAGAACCAAAACAAGACGACCCAAATTCCTCAGCTAATTTTTCCCCTGAAGATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACAAATAAGTGAAACTTTAGTGTTATTT

Coding sequence (CDS)

ATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGA

Homology

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BLAST of CmoCh15G003850 vs. Swiss-Prot
Match: CIA2_ARATH (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 1


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

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BLAST of CmoCh15G003850 vs. Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-15
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +       + C   LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG----GNTC---LPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIGK----EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

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BLAST of CmoCh15G003850 vs. Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 1


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

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BLAST of CmoCh15G003850 vs. Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQT--VPNLHDDPSLCSDSLPNV 126
           EKKE       + L+LDYE +++ W  +         P T  VP+  D   +C  +    
Sbjct: 283 EKKEKA-----LMLRLDYESVISTWGGQG-------IPWTARVPSEIDLDMVCFPTHTMG 342

Query: 127 RNGMGSEGNNAWK-----VPEIGKE-REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
            +G  +  +N ++     + + G   REA V RY+EKR++RLFSK+IRY+VRKLNAEKRP
Sbjct: 343 ESGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRP 400

Query: 187 RIKGRFVKRS 189
           R+KGRFVKRS
Sbjct: 403 RMKGRFVKRS 400

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BLAST of CmoCh15G003850 vs. Swiss-Prot
Match: COL8_ARATH (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1


Query: 81  KLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPE 140
           +L+YE ++ AW  +       ESP+ V N      L    +   R               
Sbjct: 229 RLNYENVIAAWDKQ-------ESPRDVKNNTSSFQLVPPGIEEKR--------------- 288

Query: 141 IGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
           +  EREA V RY++KR++RLF K+IRY+VRK+NA+KRPR+KGRFV+RS
Sbjct: 289 VRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 314

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BLAST of CmoCh15G003850 vs. TrEMBL
Match: A0A0A0KR00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517810 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.0e-60
Identity = 154/277 (55.60%), Postives = 168/277 (60.65%), Query Frame = 1


Query: 5   PPSPPKKQLTLFPLHPENSS-----------------------SLQKFL--HQNDTWSEP 64
           PP PP+KQLTLFPLHPEN                         SLQ FL  +QN+  SE 
Sbjct: 48  PPPPPQKQLTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPCYQNEMSSEE 107

Query: 65  E---------LVRTAMRSREREVGAEERWVCYSEVVEKK--EARSTAAD----------- 124
           E         LVRTAMR+RERE G EE+WVCYSEVVEKK  E  STAAD           
Sbjct: 108 ESRNLVEEAELVRTAMRNRERETGVEEKWVCYSEVVEKKEEEVTSTAADEWVKKVKMMKK 167

Query: 125 ---------------VWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL- 184
                          +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL 
Sbjct: 168 KKKKKKIKMEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLL 227

Query: 185 -PNVRNGMGSEGNNA------------WKVPEIG-----------------KEREASVLR 189
             NV +G+GSEG+N+            WKVPEIG                  +REASVLR
Sbjct: 228 SRNVMDGIGSEGHNSSNNTNNNSSSNVWKVPEIGIMKKEELILEGKEGWKMGQREASVLR 287

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BLAST of CmoCh15G003850 vs. TrEMBL
Match: F6GX66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00220 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.5e-38
Identity = 102/178 (57.30%), Postives = 117/178 (65.73%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARST--AADVW---------LKLDYEGILN 100
           LVR A+R+RER+  +EE+WV YSEVVEKKE   T  AAD+W         LKLDY+ ILN
Sbjct: 144 LVRAALRNRERDA-SEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILN 203

Query: 101 AWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGK------ 160
           AWS K PLFI GESPQTVP+L  D +          N MG   +  WKVPE+G       
Sbjct: 204 AWSGKGPLFIEGESPQTVPDLAHDAA----------NAMGDGWSGVWKVPEMGGSRSSMK 263

Query: 161 -------------EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
                        +R+ASVLRYKEKRQSRLFSKRIRY+VRKLNAEKRPR+KGRFVKRS
Sbjct: 264 MEEVGGGEGSKKGQRQASVLRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS 310

[Close]

BLAST of CmoCh15G003850 vs. TrEMBL
Match: A5ADZ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028190 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37
Identity = 101/178 (56.74%), Postives = 116/178 (65.17%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARST--AADVW---------LKLDYEGILN 100
           LVR A+R+RER+  +EE+WV YSEVVEKKE   T  AAD+W         LKLDY+ ILN
Sbjct: 144 LVRAALRNRERDA-SEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILN 203

Query: 101 AWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGK------ 160
           AWS K PLFI GESPQTVP+L  D +          N MG   +  WKVPE+G       
Sbjct: 204 AWSGKGPLFIEGESPQTVPDLAHDAA----------NAMGDGWSGVWKVPEMGGSRSSMK 263

Query: 161 -------------EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
                        +R+ASVLRYKEKRQ RLFSKRIRY+VRKLNAEKRPR+KGRFVKRS
Sbjct: 264 MEEVGGGEGSKKGQRQASVLRYKEKRQXRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS 310

[Close]

BLAST of CmoCh15G003850 vs. TrEMBL
Match: V4U8K3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015864mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-35
Identity = 102/190 (53.68%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 37  SEPELVRTAMRSREREVGAEERWVCYSEVVE-------KKEARSTAAD-------VW--- 96
           S+  LVRTAMR +ER+  +EERWV YSEVV+       K+E  S+  D        W   
Sbjct: 144 SDYGLVRTAMRCKERDA-SEERWVSYSEVVDSKKKKIIKEEEGSSCVDDDDDDAGAWRVK 203

Query: 97  -----------LKLDYEGILNAWSDKAPLFING-ESPQTVPNLHDDPSLCSDS--LPNVR 156
                      LKLDY+ +LNAWSDKAPLF++G ESPQTVP+L+DDP++  D+    N+ 
Sbjct: 204 QVRGKKRLSLALKLDYQEVLNAWSDKAPLFVDGGESPQTVPDLYDDPNMLFDAGNSGNLF 263

Query: 157 NGMGSEGN-NAWKVPEIGKE------REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 189
           +     GN +++KV E+GKE      REASV+RYKEKRQ+RLFSKRIRY+VRKLNAEKRP
Sbjct: 264 SVPEMTGNASSFKVDELGKEGWSKEHREASVMRYKEKRQNRLFSKRIRYEVRKLNAEKRP 323

[Close]

BLAST of CmoCh15G003850 vs. TrEMBL
Match: A0A0B0PB06_GOSAR (Zinc finger CONSTANS-LIKE 7-like protein OS=Gossypium arboreum GN=F383_27843 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-35
Identity = 99/186 (53.23%), Postives = 116/186 (62.37%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARSTAAD----------VW----------- 100
           LVR AM+ ++    +EE+WV YSEVVEKKE    ++            W           
Sbjct: 160 LVRAAMKGKKERDESEEKWVVYSEVVEKKEMEEVSSGGGGDGGYDGGAWWSKKKMKKLLA 219

Query: 101 LKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNV-RNGMGSEGNNAWKV 160
           LKLDYE I+NAWSDK PL+I GESPQ VP+LH  PS      PNV  +GMGS  +N WKV
Sbjct: 220 LKLDYEEIMNAWSDKGPLYIEGESPQIVPHLHQ-PS------PNVVMDGMGS-ASNVWKV 279

Query: 161 PEIGKE-----------------REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIK 188
           PE+  +                 REASVLRYKEKRQ+RLFSKRIRY+VRKLNAEKRPR+K
Sbjct: 280 PEMASDLKIKEEIEEKEEWRKGHREASVLRYKEKRQNRLFSKRIRYEVRKLNAEKRPRLK 337

[Close]

BLAST of CmoCh15G003850 vs. TAIR10
Match: AT5G14370.1 (AT5G14370.1 CCT motif family protein)

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 94/186 (50.54%), Postives = 113/186 (60.75%), Query Frame = 1


Query: 24  SSLQKFLHQNDTWSEPELVRTAMR--SREREVGAEERWVCYSEVVEKKEARSTAA----- 83
           ++L  +  Q+   S   L+RTAMR  + E E   EERWV YSEVVE+  +RS        
Sbjct: 160 NNLSPYDRQDHGSSSSSLLRTAMRKGASEEEETTEERWVSYSEVVEEVMSRSGTPRCCGG 219

Query: 84  --------DVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGM 143
                    + LKLDYE I+ AWSDK  L+++GE PQTVP+LH      +D         
Sbjct: 220 GDGNDGRPSLALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGFND--------- 279

Query: 144 GSEGNNAWKVPEIGK-------EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIK 188
           G E  N W VPE+          REAS+LRYKEKRQ+RLFSKRIRYQVRKLNAEKRPR+K
Sbjct: 280 GGEAGNLWAVPEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVK 336

[Close]

BLAST of CmoCh15G003850 vs. TAIR10
Match: AT5G57180.2 (AT5G57180.2 chloroplast import apparatus 2)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-17
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 1


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

[Close]

BLAST of CmoCh15G003850 vs. TAIR10
Match: AT1G73870.1 (AT1G73870.1 B-box type zinc finger protein with CCT domain)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +       + C   LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG----GNTC---LPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIGK----EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

[Close]

BLAST of CmoCh15G003850 vs. TAIR10
Match: AT1G25440.1 (AT1G25440.1 B-box type zinc finger protein with CCT domain)

HSP 1 Score: 80.9 bits (198), Expect = 9.4e-16
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 1


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

[Close]

BLAST of CmoCh15G003850 vs. TAIR10
Match: AT1G07050.1 (AT1G07050.1 CCT motif family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1


Query: 80  LKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVP 139
           L L+++ +++AWSD        + P        D S+    +P +               
Sbjct: 106 LNLNHQEVIDAWSDH-------QKPLWTDTSTLDNSVYRGEVPVIEE------------- 165

Query: 140 EIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
           +    REASVLRYKEKRQSRLFSK+IRYQVRKLNA+KRPR KGRFVKR
Sbjct: 166 KRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: gi|778703514|ref|XP_004142772.2| (PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 1.0e-59
Identity = 154/277 (55.60%), Postives = 168/277 (60.65%), Query Frame = 1


Query: 5   PPSPPKKQLTLFPLHPENSS-----------------------SLQKFL--HQNDTWSEP 64
           PP PP+KQLTLFPLHPEN                         SLQ FL  +QN+  SE 
Sbjct: 48  PPPPPQKQLTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPCYQNEMSSEE 107

Query: 65  E---------LVRTAMRSREREVGAEERWVCYSEVVEKK--EARSTAAD----------- 124
           E         LVRTAMR+RERE G EE+WVCYSEVVEKK  E  STAAD           
Sbjct: 108 ESRNLVEEAELVRTAMRNRERETGVEEKWVCYSEVVEKKEEEVTSTAADEWVKKVKMMKK 167

Query: 125 ---------------VWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL- 184
                          +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL 
Sbjct: 168 KKKKKKIKMEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLL 227

Query: 185 -PNVRNGMGSEGNNA------------WKVPEIG-----------------KEREASVLR 189
             NV +G+GSEG+N+            WKVPEIG                  +REASVLR
Sbjct: 228 SRNVMDGIGSEGHNSSNNTNNNSSSNVWKVPEIGIMKKEELILEGKEGWKMGQREASVLR 287

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: gi|659117908|ref|XP_008458850.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 3.2e-58
Identity = 154/279 (55.20%), Postives = 168/279 (60.22%), Query Frame = 1


Query: 5   PPSPPKKQLTLFPLHPENSS-----------------------SLQKFL--HQNDTWSEP 64
           PP PP+KQLTLFPLHPEN                         SLQ FL  +QN+  SE 
Sbjct: 48  PPPPPQKQLTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPSYQNEMSSEE 107

Query: 65  E---------LVRTAMRSRER-EVGAEERWVCYSEVVEKK--EARSTAAD---------- 124
           E         LVRTAMR+RER E G EE+WVCYSEVVEKK  E  STAAD          
Sbjct: 108 ESRNLAEEAELVRTAMRNRERPETGVEEKWVCYSEVVEKKEEEVTSTAADEWVKKIKTMK 167

Query: 125 ---------------VWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL- 184
                          +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL 
Sbjct: 168 KKKKKKIKMEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLL 227

Query: 185 -PNVRNGMGSEGNNA--------------WKVPEIG-----------------KEREASV 189
             NV +G+GSEG+N+              WKVPEIG                  +REASV
Sbjct: 228 SRNVMDGIGSEGHNSSNNNYNNNSSSSNVWKVPEIGILKKEGLMLEGKEGWKMGQREASV 287

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: gi|1021530707|ref|XP_016162304.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 8 [Arachis ipaensis])

HSP 1 Score: 169.5 bits (428), Expect = 5.7e-39
Identity = 102/174 (58.62%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARSTAAD---------VWLKLDYEGILNAW 100
           LVR AMR RE E   EERWVCYSEVVEKKE                + LKLD+EGILNAW
Sbjct: 149 LVRKAMRRREEEGSEEERWVCYSEVVEKKETMEEVTSYCGTTSFGLLSLKLDHEGILNAW 208

Query: 101 SDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGN----NAWKVPEIGKE--- 160
           SDK  L+I GE+PQTVP+ H+D    +  LPN   G G   N    N W VPEIG E   
Sbjct: 209 SDKGSLYIAGEAPQTVPDFHNDALFYNALLPNNIGGDGCGSNDGIGNTWVVPEIGGENRT 268

Query: 161 -----------REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                      REASV RYKEKRQ+RLFSKRIRY+VRKLNAEKRPR+KGRFVKR
Sbjct: 269 RTEEMGLKVGQREASVQRYKEKRQNRLFSKRIRYEVRKLNAEKRPRMKGRFVKR 322

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: gi|1012194235|ref|XP_015971411.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 8 [Arachis duranensis])

HSP 1 Score: 166.8 bits (421), Expect = 3.7e-38
Identity = 101/174 (58.05%), Postives = 111/174 (63.79%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARSTAAD---------VWLKLDYEGILNAW 100
           LVR AMR RE E   EERWVCYSEVVEKKE                + LKLD+EGILNAW
Sbjct: 149 LVRKAMRRREEEGSEEERWVCYSEVVEKKETMEEVTSYCGTTSFGLLSLKLDHEGILNAW 208

Query: 101 SDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGN----NAWKVPEIGKE--- 160
           SDK  L+I GE+PQTVP+ H+     +  LPN   G G   N    N W VPEIG E   
Sbjct: 209 SDKGSLYIAGEAPQTVPDFHNHALFYNALLPNNIGGDGCGSNDGTGNTWVVPEIGGENRT 268

Query: 161 -----------REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                      REASV RYKEKRQ+RLFSKRIRY+VRKLNAEKRPR+KGRFVKR
Sbjct: 269 TTEEMGLKVGQREASVQRYKEKRQNRLFSKRIRYEVRKLNAEKRPRMKGRFVKR 322

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: gi|225452242|ref|XP_002268929.1| (PREDICTED: uncharacterized protein LOC100254358 [Vitis vinifera])

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 102/178 (57.30%), Postives = 117/178 (65.73%), Query Frame = 1


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKKEARST--AADVW---------LKLDYEGILN 100
           LVR A+R+RER+  +EE+WV YSEVVEKKE   T  AAD+W         LKLDY+ ILN
Sbjct: 144 LVRAALRNRERDA-SEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILN 203

Query: 101 AWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGK------ 160
           AWS K PLFI GESPQTVP+L  D +          N MG   +  WKVPE+G       
Sbjct: 204 AWSGKGPLFIEGESPQTVPDLAHDAA----------NAMGDGWSGVWKVPEMGGSRSSMK 263

Query: 161 -------------EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
                        +R+ASVLRYKEKRQSRLFSKRIRY+VRKLNAEKRPR+KGRFVKRS
Sbjct: 264 MEEVGGGEGSKKGQRQASVLRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS 310

The following BLAST results are available for this feature:

BLAST of CmoCh15G003850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CIA2_ARATH	1.5e-15	51.35	Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1	[more]
COL7_ARATH	3.4e-15	43.08	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1	[more]
COL16_ARATH	1.7e-14	40.46	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2	[more]
COL6_ARATH	2.0e-12	42.31	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2	[more]
COL8_ARATH	1.3e-11	40.74	Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2	[more]

BLAST of CmoCh15G003850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR00_CUCSA	7.0e-60	55.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517810 PE=4 SV=1	[more]
F6GX66_VITVI	7.5e-38	57.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00220 PE=4 SV=...	[more]
A5ADZ4_VITVI	2.8e-37	56.74	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028190 PE=4 SV=1	[more]
V4U8K3_9ROSI	7.7e-35	53.68	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015864mg PE=4 SV=1	[more]
A0A0B0PB06_GOSAR	7.7e-35	53.23	Zinc finger CONSTANS-LIKE 7-like protein OS=Gossypium arboreum GN=F383_27843 PE=...	[more]

BLAST of CmoCh15G003850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14370.1	6.3e-36	50.54	CCT motif family protein	[more]
AT5G57180.2	8.5e-17	51.35	chloroplast import apparatus 2	[more]
AT1G73870.1	1.9e-16	43.08	B-box type zinc finger protein with CCT domain	[more]
AT1G25440.1	9.4e-16	40.46	B-box type zinc finger protein with CCT domain	[more]
AT1G07050.1	1.4e-14	46.30	CCT motif family protein	[more]

BLAST of CmoCh15G003850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703514\|ref\|XP_004142772.2\|	1.0e-59	55.60	PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis sativus]	[more]
gi\|659117908\|ref\|XP_008458850.1\|	3.2e-58	55.20	PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis melo]	[more]
gi\|1021530707\|ref\|XP_016162304.1\|	5.7e-39	58.62	PREDICTED: zinc finger protein CONSTANS-LIKE 8 [Arachis ipaensis]	[more]
gi\|1012194235\|ref\|XP_015971411.1\|	3.7e-38	58.05	PREDICTED: zinc finger protein CONSTANS-LIKE 8 [Arachis duranensis]	[more]
gi\|225452242\|ref\|XP_002268929.1\|	1.1e-37	57.30	PREDICTED: uncharacterized protein LOC100254358 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010402	CCT_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003850.1	CmoCh15G003850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 145..187 score: 8.1
IPR010402	CCT domain	PROFILE	PS51017	CCT	coord: 145..187 score: 15
None	No IPR available	PANTHER	PTHR31874	FAMILY NOT NAMED	coord: 40..188 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G003850	Cucsa.011020	Cucumber (Gy14) v1	cgycmoB0543
CmoCh15G003850	CmaCh15G003740	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G003850	CmaCh04G026630	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G003850	Cla004643	Watermelon (97103) v1	cmowmB243
CmoCh15G003850	Csa5G517810	Cucumber (Chinese Long) v2	cmocuB288
CmoCh15G003850	MELO3C021608	Melon (DHL92) v3.5.1	cmomeB239
CmoCh15G003850	ClCG09G019520	Watermelon (Charleston Gray)	cmowcgB233
CmoCh15G003850	CSPI05G17950	Wild cucumber (PI 183967)	cmocpiB297
CmoCh15G003850	Lsi02G016150	Bottle gourd (USVL1VR-Ls)	cmolsiB261
CmoCh15G003850	Cp4.1LG13g09080	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G003850	Cp4.1LG01g23670	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G003850	MELO3C021608.2	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G003850	CsaV3_5G026860	Cucumber (Chinese Long) v3	cmocucB0349
CmoCh15G003850	Cla97C09G180960	Watermelon (97103) v2	cmowmbB305
CmoCh15G003850	Bhi06G000505	Wax gourd	cmowgoB0374
CmoCh15G003850	CsGy5G017630	Cucumber (Gy14) v2	cgybcmoB585
CmoCh15G003850	Carg04481	Silver-seed gourd	carcmoB0936
CmoCh15G003850	Carg02336	Silver-seed gourd	carcmoB0362

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G003850	CmoCh04G027900	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G003850	Cucurbita moschata (Rifu)	cmocmoB095
CmoCh15G003850	Silver-seed gourd	carcmoB0505