Carg02336 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02336
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein CONSTANS-LIKE 6
Location	Cucurbita_argyrosperma_scaffold_007 : 1255149 .. 1256020 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTGTAAGATCAGTTTACTTCATTGAAAATCAGAGTTTTAGATGTGTTGATCTTCAAATTGTTTGGTGTTGATGCAGAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGTAACTTTTCTTCATCCTTCCTAATTTACCACCTCTTTTTACTTTTTACTATCCTTAATATTATGTGACTTTTCTACCCCTCTTTCAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACA

mRNA sequence

ATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACA

Coding sequence (CDS)

ATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGA

Protein sequence

MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWVCYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS

Homology

[Close]

BLAST of Carg02336 vs. NCBI nr
Match: XP_022939352.1 (zinc finger protein CONSTANS-LIKE 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 376.3 bits (965), Expect = 6.0e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 188

[Close]

BLAST of Carg02336 vs. NCBI nr
Match: XP_022939353.1 (zinc finger protein CONSTANS-LIKE 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 370.2 bits (949), Expect = 4.3e-99
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPN RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPN-RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of Carg02336 vs. NCBI nr
Match: XP_023551230.1 (zinc finger protein CONSTANS-LIKE 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.5 bits (916), Expect = 2.9e-95
Identity = 178/188 (94.68%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPP+KQLTLFPLHPENSSSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPQKQLTLFPLHPENSSSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEV+EKKEARSTAADVWLK+DYEGILNAWSDKAPLFINGESPQTV NLHDDPSLCSDS
Sbjct: 61  CYSEVMEKKEARSTAADVWLKMDYEGILNAWSDKAPLFINGESPQTVANLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNG+G EGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGVGIEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRF KRS
Sbjct: 181 KGRFGKRS 188

[Close]

BLAST of Carg02336 vs. NCBI nr
Match: XP_022992811.1 (zinc finger protein CONSTANS-LIKE 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 2.1e-93
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHD PSPP+KQLTLFPLHPEN SSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDQPSPPQKQLTLFPLHPEN-SSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQ VPNLHDDPSL SDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQIVPNLHDDPSLYSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNG GSEGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGFGSEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of Carg02336 vs. NCBI nr
Match: XP_022992812.1 (zinc finger protein CONSTANS-LIKE 7-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 1.5e-91
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHD PSPP+KQLTLFPLHPEN SSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDQPSPPQKQLTLFPLHPEN-SSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQ VPNLHDDPSL SDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQIVPNLHDDPSLYSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPN RNG GSEGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPN-RNGFGSEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 186

[Close]

BLAST of Carg02336 vs. TAIR10
Match: AT5G14370.1 (CCT motif family protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-31
Identity = 80/149 (53.69%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 59  WVCYSEVVEKKEARSTA-------------ADVWLKLDYEGILNAWSDKAPLFINGESPQ 118
           WV YSEVVE+  +RS                 + LKLDYE I+ AWSDK  L+++GE PQ
Sbjct: 197 WVSYSEVVEEVMSRSGTPRCCGGGDGNDGRPSLALKLDYEQIMEAWSDKGTLYVDGEPPQ 256

Query: 119 TVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGK-------EREASVLRYKEKRQS 178
           TVP+LH      +D         G E  N W VPE+          REAS+LRYKEKRQ+
Sbjct: 257 TVPDLHASADGFND---------GGEAGNLWAVPEMETTERLWRGHREASLLRYKEKRQN 316

Query: 179 RLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
           RLFSKRIRYQVRKLNAEKRPR+KGRFVKR
Sbjct: 317 RLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336

[Close]

BLAST of Carg02336 vs. TAIR10
Match: AT5G57180.2 (chloroplast import apparatus 2)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-17
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

[Close]

BLAST of Carg02336 vs. TAIR10
Match: AT1G73870.1 (B-box type zinc finger protein with CCT domain)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-16
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +          +  LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG-------GNTCLPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIG----KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

[Close]

BLAST of Carg02336 vs. TAIR10
Match: AT1G25440.1 (B-box type zinc finger protein with CCT domain)

HSP 1 Score: 80.9 bits (198), Expect = 9.4e-16
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

[Close]

BLAST of Carg02336 vs. TAIR10
Match: AT1G07050.1 (CCT motif family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 80  LKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVP 139
           L L+++ +++AWSD        + P        D S+    +P +               
Sbjct: 106 LNLNHQEVIDAWSDH-------QKPLWTDTSTLDNSVYRGEVPVIEE------------- 165

Query: 140 EIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
           +    REASVLRYKEKRQSRLFSK+IRYQVRKLNA+KRPR KGRFVKR
Sbjct: 166 KRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193

[Close]

BLAST of Carg02336 vs. Swiss-Prot
Match: sp|Q9LU68|CIA2_ARATH (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

[Close]

BLAST of Carg02336 vs. Swiss-Prot
Match: sp|Q9C9A9|COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-15
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +          +  LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG-------GNTCLPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIG----KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

[Close]

BLAST of Carg02336 vs. Swiss-Prot
Match: sp|Q8RWD0|COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

[Close]

BLAST of Carg02336 vs. Swiss-Prot
Match: sp|Q8LG76|COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 68  KKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQT--VPNLHDDPSLCSDSLPNVR 127
           K+E +  A  + L+LDYE +++ W  +         P T  VP+  D   +C  +     
Sbjct: 281 KEEKKEKA--LMLRLDYESVISTWGGQG-------IPWTARVPSEIDLDMVCFPTHTMGE 340

Query: 128 NGMGSEGNNAWK-----VPEIGK-EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPR 187
           +G  +  +N ++     + + G   REA V RY+EKR++RLFSK+IRY+VRKLNAEKRPR
Sbjct: 341 SGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPR 400

Query: 188 IKGRFVKRS 189
           +KGRFVKRS
Sbjct: 401 MKGRFVKRS 400

[Close]

BLAST of Carg02336 vs. Swiss-Prot
Match: sp|Q9M9B3|COL8_ARATH (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-10
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 141 IGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
           +  EREA V RY++KR++RLF K+IRY+VRK+NA+KRPR+KGRFV+RS
Sbjct: 267 VRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 314

[Close]

BLAST of Carg02336 vs. TrEMBL
Match: tr|A0A1S3C8T7|A0A1S3C8T7_CUCME (zinc finger protein CONSTANS-LIKE 6 OS=Cucumis melo OX=3656 GN=LOC103498130 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.9e-52
Identity = 142/271 (52.40%), Postives = 154/271 (56.83%), Query Frame = 0


Query: 13  LTLFPLHPEN-----------------------SSSLQKFL--HQNDTWS---------E 72
           LTLFPLHPEN                         SLQ FL  +QN+  S         E
Sbjct: 56  LTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPSYQNEMSSEEESRNLAEE 115

Query: 73  PELVRTAMRSRER-EVGAEERWVCYSEVVEKKE--------------------------- 132
            ELVRTAMR+RER E G EE+WVCYSEVVEKKE                           
Sbjct: 116 AELVRTAMRNRERPETGVEEKWVCYSEVVEKKEXXXXXXXXDEWVXXXXXXXXXXXXXXK 175

Query: 133 ARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL--PNVRNGM 189
                  +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL   NV +G+
Sbjct: 176 MEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLLSRNVMDGI 235

[Close]

BLAST of Carg02336 vs. TrEMBL
Match: tr|A0A0A0KR00|A0A0A0KR00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517810 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 138/269 (51.30%), Postives = 151/269 (56.13%), Query Frame = 0


Query: 13  LTLFPLHPEN-----------------------SSSLQKFL--HQNDTWS---------E 72
           LTLFPLHPEN                         SLQ FL  +QN+  S         E
Sbjct: 56  LTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPCYQNEMSSEEESRNLVEE 115

Query: 73  PELVRTAMRSREREVGAEERWVCYSEVVEKK----------------------------E 132
            ELVRTAMR+RERE G EE+WVCYSEV                                +
Sbjct: 116 AELVRTAMRNRERETGVEEKWVCYSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIK 175

Query: 133 ARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL--PNVRNGM 189
                  +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL   NV +G+
Sbjct: 176 MEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLLSRNVMDGI 235

[Close]

BLAST of Carg02336 vs. TrEMBL
Match: tr|A0A2I4GPG5|A0A2I4GPG5_9ROSI (uncharacterized protein LOC109009665 OS=Juglans regia OX=51240 GN=LOC109009665 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 108/192 (56.25%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 40  ELVRTAMRSREREVGAEERWVCYSEV-VEKK---EARSTAADVW---------------L 99
           +LVRTAMR++ERE   EE+WVCYSEV VEKK   E  S  ADVW               L
Sbjct: 160 KLVRTAMRNKEREPSEEEKWVCYSEVLVEKKELEEVSSCTADVWPPCAIKRTKMQGLLSL 219

Query: 100 KLDYEGILNAWSDKAPLFINGES-PQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVP 159
           KLDY+GILNAWS K PLFI GES PQTVP+LH+D     D    + +G G+ G N W VP
Sbjct: 220 KLDYQGILNAWSGKGPLFIAGESPPQTVPDLHEDRFFAHDGANILGDGWGNVG-NIWAVP 279

Query: 160 EIG-----------------------KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEK 189
           E+G                       + REASVLRYKEKRQ+RLFSKRIRY+VRKLNAEK
Sbjct: 280 EMGCSSTDIGGMKVEEEAEGKDGWKTRHREASVLRYKEKRQNRLFSKRIRYEVRKLNAEK 339

[Close]

BLAST of Carg02336 vs. TrEMBL
Match: tr|F6GX66|F6GX66_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0219g00220 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 102/178 (57.30%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKK--EARSTAADVW---------LKLDYEGILN 100
           LVR A+R+RER+  +EE+WV YSEVVEKK  E  S AAD+W         LKLDY+ ILN
Sbjct: 144 LVRAALRNRERD-ASEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILN 203

Query: 101 AWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIG------- 160
           AWS K PLFI GESPQTVP+L  D +          N MG   +  WKVPE+G       
Sbjct: 204 AWSGKGPLFIEGESPQTVPDLAHDAA----------NAMGDGWSGVWKVPEMGGSRSSMK 263

Query: 161 ------------KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
                        +R+ASVLRYKEKRQSRLFSKRIRY+VRKLNAEKRPR+KGRFVKRS
Sbjct: 264 MEEVGGGEGSKKGQRQASVLRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS 310

[Close]

BLAST of Carg02336 vs. TrEMBL
Match: tr|A5ADZ4|A5ADZ4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028190 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 101/178 (56.74%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 41  LVRTAMRSREREVGAEERWVCYSEVVEKK--EARSTAADVW---------LKLDYEGILN 100
           LVR A+R+RER+  +EE+WV YSEVVEKK  E  S AAD+W         LKLDY+ ILN
Sbjct: 144 LVRAALRNRERD-ASEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILN 203

Query: 101 AWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIG------- 160
           AWS K PLFI GESPQTVP+L  D +          N MG   +  WKVPE+G       
Sbjct: 204 AWSGKGPLFIEGESPQTVPDLAHDAA----------NAMGDGWSGVWKVPEMGGSRSSMK 263

Query: 161 ------------KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
                        +R+ASVLRYKEKRQ RLFSKRIRY+VRKLNAEKRPR+KGRFVKRS
Sbjct: 264 MEEVGGGEGSKKGQRQASVLRYKEKRQXRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS 310

The following BLAST results are available for this feature:

BLAST of Carg02336 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939352.1	6.0e-101	100.00	zinc finger protein CONSTANS-LIKE 7 isoform X1 [Cucurbita moschata]	[more]
XP_022939353.1	4.3e-99	99.47	zinc finger protein CONSTANS-LIKE 7 isoform X2 [Cucurbita moschata]	[more]
XP_023551230.1	2.9e-95	94.68	zinc finger protein CONSTANS-LIKE 7 [Cucurbita pepo subsp. pepo]	[more]
XP_022992811.1	2.1e-93	95.21	zinc finger protein CONSTANS-LIKE 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022992812.1	1.5e-91	94.68	zinc finger protein CONSTANS-LIKE 7-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg02336 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14370.1	2.1e-31	53.69	CCT motif family protein	[more]
AT5G57180.2	8.5e-17	51.35	chloroplast import apparatus 2	[more]
AT1G73870.1	2.5e-16	42.31	B-box type zinc finger protein with CCT domain	[more]
AT1G25440.1	9.4e-16	40.46	B-box type zinc finger protein with CCT domain	[more]
AT1G07050.1	1.4e-14	46.30	CCT motif family protein	[more]

BLAST of Carg02336 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LU68\|CIA2_ARATH	1.5e-15	51.35	Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 P...	[more]
sp\|Q9C9A9\|COL7_ARATH	4.5e-15	42.31	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2...	[more]
sp\|Q8RWD0\|COL16_ARATH	1.7e-14	40.46	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE...	[more]
sp\|Q8LG76\|COL6_ARATH	1.6e-12	41.86	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2...	[more]
sp\|Q9M9B3\|COL8_ARATH	7.4e-10	66.67	Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1...	[more]

BLAST of Carg02336 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8T7\|A0A1S3C8T7_CUCME	9.9e-52	52.40	zinc finger protein CONSTANS-LIKE 6 OS=Cucumis melo OX=3656 GN=LOC103498130 PE=4...	[more]
tr\|A0A0A0KR00\|A0A0A0KR00_CUCSA	6.4e-51	51.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517810 PE=4 SV=1	[more]
tr\|A0A2I4GPG5\|A0A2I4GPG5_9ROSI	1.1e-39	56.25	uncharacterized protein LOC109009665 OS=Juglans regia OX=51240 GN=LOC109009665 P...	[more]
tr\|F6GX66\|F6GX66_VITVI	1.4e-37	57.30	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0219g00220 PE=4 SV=...	[more]
tr\|A5ADZ4\|A5ADZ4_VITVI	5.3e-37	56.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028190 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR010402	CCT_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02336-RA	Carg02336-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 145..187 e-value: 8.9E-19 score: 67.2
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 145..187 score: 15.825
None	No IPR available	PANTHER	PTHR31874:SF18	CCT MOTIF FAMILY PROTEIN	coord: 39..188
None	No IPR available	PANTHER	PTHR31874	FAMILY NOT NAMED	coord: 39..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02336	Cla004643	Watermelon (97103) v1	carwmB0246
Carg02336	Csa5G517810	Cucumber (Chinese Long) v2	carcuB0294
Carg02336	MELO3C021608	Melon (DHL92) v3.5.1	carmeB0260
Carg02336	ClCG09G019520	Watermelon (Charleston Gray)	carwcgB0249
Carg02336	CSPI05G17950	Wild cucumber (PI 183967)	carcpiB0298
Carg02336	Cucsa.011020	Cucumber (Gy14) v1	carcgyB0315
Carg02336	CmaCh04G026630	Cucurbita maxima (Rimu)	carcmaB0374
Carg02336	CmaCh15G003740	Cucurbita maxima (Rimu)	carcmaB0362
Carg02336	CmoCh04G027900	Cucurbita moschata (Rifu)	carcmoB0370
Carg02336	CmoCh15G003850	Cucurbita moschata (Rifu)	carcmoB0362
Carg02336	Lsi02G016150	Bottle gourd (USVL1VR-Ls)	carlsiB232
Carg02336	Cp4.1LG13g09080	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02336	Cp4.1LG01g23670	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02336	CsGy5G017630	Cucumber (Gy14) v2	carcgybB0281
Carg02336	MELO3C021608.2	Melon (DHL92) v3.6.1	carmedB0270
Carg02336	CsaV3_5G026860	Cucumber (Chinese Long) v3	carcucB0297
Carg02336	Cla97C09G180960	Watermelon (97103) v2	carwmbB0279
Carg02336	Bhi06G000505	Wax gourd	carwgoB0339

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02336	Carg04481	Silver-seed gourd	carcarB306

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02336	Silver-seed gourd	carcarB298
Carg02336	Silver-seed gourd	carcarB310
Carg02336	Cucurbita maxima (Rimu)	carcmaB0357
Carg02336	Cucurbita moschata (Rifu)	carcmoB0359
Carg02336	Cucurbita pepo (Zucchini)	carcpeB0381