CmoCh15G003830 (gene) Cucurbita moschata (Rifu)

NameCmoCh15G003830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitochondrial inner membrane protease ATP23
LocationCmo_Chr15 : 1770104 .. 1770809 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATGGCGGGAGGGAAATTCAGTTTAATATAATTTTATATAATATAGTGTGAATTTGAAAAATATATAATATACATATTATATACAAATGGATCTATCGGTTCACGAAACCGACCCGGATGATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAATTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTGTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAAGTATGAACAACAAATAAATTGTTTCCTGTTTAATTCGTTTATTCTAATGCTTTTTTAGCAGTTCTCTACTACCGAAATGTCTGTTCTAGGTCTGTATTTTTTCCCTCAATGGATTATTGAATCTATTCCTGCGTGCCTCAGCTCCGATGATGAAGTTCTTGATAGAGCATTTGGAGAAATCCGGATGTGGAATCGGGGATAAGTTCATTAAGAATTCTTCTCATGGTAGAACTTCAAATCTCTGTGTACGCTCATGCTAACTTGAATCTGATCTTGGCAATGATTTCTGGAGGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACACAGCCATTTGATAGATCTCCCTGA

mRNA sequence

ACAATGGCGGGAGGGAAATTCAGTTTAATATAATTTTATATAATATAGTGTGAATTTGAAAAATATATAATATACATATTATATACAAATGGATCTATCGGTTCACGAAACCGACCCGGATGATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAATTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTGTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAACTCCGATGATGAAGTTCTTGATAGAGCATTTGGAGAAATCCGGATGTGGAATCGGGGATAAGTTCATTAAGAATTCTTCTCATGGTAGAACTTCAAATCTCTGTGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACACAGCCATTTGATAGATCTCCCTGA

Coding sequence (CDS)

ATGATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAATTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTGTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAACTCCGATGATGAAGTTCTTGATAGAGCATTTGGAGAAATCCGGATGTGGAATCGGGGATAAGTTCATTAAGAATTCTTCTCATGGTAGAACTTCAAATCTCTGTGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTAATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACACAGCCATTTGATAGATCTCCCTGA
BLAST of CmoCh15G003830 vs. Swiss-Prot
Match: ATP23_ASHGO (Mitochondrial inner membrane protease ATP23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 1

Query: 31  LVFCRQRCRTKEECEDTIRRNL--RTPMMKFLIEHLE--------------KSGCGIGDK 90
           ++ C+ R R K + EDT+   L  +   +KF ++ +                  C +  +
Sbjct: 127 ILLCQNRIRDKWQMEDTLSHELVHQFDELKFEVDWMNLKHHACSEVRASNLSGECRLSQE 186

Query: 91  FIK---NSSHGRTSNLCECVRRRVMKSVAANPYCS-EAAAKDAMEAVWDVCYNDTQPFD 130
           F +   N S GR     ECVRRR + SV  NP C  +A A+  ++ VW  C+NDT+PF+
Sbjct: 187 FFRRGFNGSFGRGHQ--ECVRRRAVLSVMGNPKCKDKAEAEQIVDEVWQSCFNDTRPFE 243

BLAST of CmoCh15G003830 vs. Swiss-Prot
Match: ATP23_LODEL (Mitochondrial inner membrane protease ATP23 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=ATP23 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 36/117 (30.77%), Postives = 53/117 (45.30%), Query Frame = 1

Query: 31  LVFCRQRCRTKEECEDTIRRNLRT--PMMKFLIEHLE--------------KSGCGIGDK 90
           +V C    R+K + ED +   L      MKF +  L+                 C + ++
Sbjct: 122 IVLCSNYIRSKWQLEDILAHELVHVYDYMKFNVNMLDLRQHACTEIRASMLSGECRVWNE 181

Query: 91  FIKNSSHGRTSNLCECVRRRVMKSVAANPYC-SEAAAKDAMEAVWDVCYNDTQPFDR 131
             K           EC+RRR + SV ANP C S   A+ A++ VW  C+NDT+PF+R
Sbjct: 182 MKKTGMGNFGKKFQECIRRRAVLSVEANPVCKSREEAEKAVDVVWKSCFNDTRPFER 238

BLAST of CmoCh15G003830 vs. Swiss-Prot
Match: ATP23_ASPOR (Mitochondrial inner membrane protease atp23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atp23 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 33/106 (31.13%), Postives = 48/106 (45.28%), Query Frame = 1

Query: 25  ETWIKSLVFCRQRCRTKEECEDTIRRNLRTPMMKFLIEHLEKSGCGIGDKFIKNSSHGRT 84
           +T    +V      R K +  D +R    T ++K  +       C    +F +      T
Sbjct: 133 DTMAHEMVHAYDHLRFKVDWADNLRHAACTEVLKTSLS----GECRWAREFFRRGQWRFT 192

Query: 85  SNLCECVRRRVMKSVAANPYCS-EAAAKDAMEAVWDVCYNDTQPFD 130
               ECV+RR + SV A P C  EA A+  +  VWD C+ DT+PFD
Sbjct: 193 QQHQECVKRRAILSVRARPTCKDEAHAERVVNEVWDSCFRDTRPFD 234

BLAST of CmoCh15G003830 vs. Swiss-Prot
Match: ATP23_PICGU (Mitochondrial inner membrane protease ATP23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=ATP23 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.4e-06
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1

Query: 60  LIEHLEKSGCG-IGDKFIKNSSHGRTSNLCECVRRRVMKSVAANPYCS-EAAAKDAMEAV 119
           ++  ++K+G G  G KF              CVRRR   SV+ANP CS +  A+  + AV
Sbjct: 179 ILNEIKKTGLGDFGSKFQA------------CVRRRAAISVSANPNCSSKEEAESVVNAV 238

Query: 120 WDVCYNDTQPFDR 131
           W+ C+NDT+PF+R
Sbjct: 239 WESCFNDTRPFER 239

BLAST of CmoCh15G003830 vs. Swiss-Prot
Match: ATP23_SCLS1 (Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atp23 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1

Query: 74  KFIKNSSHGRTSNLCECVRRRVMKSVAANPYCSE-AAAKDAMEAVWDVCYNDTQPFD 130
           +F   +++  T    ECVRRR +KSV A P+C +   A   +  VWD CY+DT+PFD
Sbjct: 184 EFWTRNNYRVTQQHQECVRRRAVKSVLARPWCKDDVQAVKVVNEVWDSCYSDTRPFD 240

BLAST of CmoCh15G003830 vs. TrEMBL
Match: M1AUF2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011703 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 66/127 (51.97%), Postives = 77/127 (60.63%), Query Frame = 1

Query: 40  TKEECEDTIRRNLRTPMMKFLIEHLEKSGCGIGDKFIK----------------NSSHGR 99
           T EEC+D IRR LRTPM+KFL EHLEKSGC IGD FIK                    G 
Sbjct: 12  TVEECQDMIRRGLRTPMVKFLKEHLEKSGCRIGDNFIKAIHCDQKISGGYARGRGIRAGH 71

Query: 100 TSNLC------------------ECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDT 133
            S  C                  ECV+RRVMKS++ NP CSE+A++DAMEA+WDVCYNDT
Sbjct: 72  LSGDCHYKRELLRGYLKIRGHEQECVKRRVMKSMSGNPNCSESASRDAMEAIWDVCYNDT 131

BLAST of CmoCh15G003830 vs. TrEMBL
Match: M5WXF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011801mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           F+K   H +     +CVRRRVMKSV ANPYCSEAAAKDAMEAVWDVCYNDTQPFDR+P
Sbjct: 143 FVKIRGHEQ-----DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

BLAST of CmoCh15G003830 vs. TrEMBL
Match: D7SPY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00250 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-16
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           ++K   HG+     ECVRRRVMKSV ANP+CSEAAAKDAMEAVWDVCYNDT+PFDR+P
Sbjct: 143 YLKVRGHGQ-----ECVRRRVMKSVTANPHCSEAAAKDAMEAVWDVCYNDTKPFDRAP 195

BLAST of CmoCh15G003830 vs. TrEMBL
Match: B9SLT5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.6e-16
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 89  ECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           ECVRRRVMKS+ ANPYCSEAAAKDAMEAVWDVCYNDT+PFDR+P
Sbjct: 144 ECVRRRVMKSMIANPYCSEAAAKDAMEAVWDVCYNDTKPFDRAP 187

BLAST of CmoCh15G003830 vs. TrEMBL
Match: A0A0A0KSC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.6e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1

Query: 89  ECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           ECVRRRVMKS+ ANPYC EAAAKDAMEAVWDVCYNDTQPFDR+P
Sbjct: 152 ECVRRRVMKSLVANPYCPEAAAKDAMEAVWDVCYNDTQPFDRAP 195

BLAST of CmoCh15G003830 vs. TAIR10
Match: AT3G03420.1 (AT3G03420.1 Ku70-binding family protein)

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           FIK   H +     EC++RRV+KS+  NPYCSE AAKDAMEAVWD CYNDT+PFDR+P
Sbjct: 142 FIKLRGHEQ-----ECIKRRVLKSLRGNPYCSEVAAKDAMEAVWDTCYNDTKPFDRAP 194

BLAST of CmoCh15G003830 vs. NCBI nr
Match: gi|729377715|ref|XP_010549760.1| (PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 56/131 (42.75%), Postives = 75/131 (57.25%), Query Frame = 1

Query: 36  QRCRTKEECEDTIRRNLRTPMMKFLIEHLEKSGCGIGDKFIK------------NSSHGR 95
           QR  + EEC++ IRR+LR P +KFLIE +EKSGC +G  FI              +  G 
Sbjct: 18  QRGSSIEECQNMIRRSLRNPKVKFLIEQMEKSGCRVGANFINAVVCKGPIAGGYTAGEGI 77

Query: 96  TSNLC----------------------ECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVC 133
            +N                        +C++RRVM S+  NP C+EAA+KDAMEA+WD+C
Sbjct: 78  RANHLSGDCHFKRELLRGYLDMRGHEQDCIKRRVMMSMRNNPNCTEAASKDAMEAIWDIC 137

BLAST of CmoCh15G003830 vs. NCBI nr
Match: gi|645248855|ref|XP_008230483.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Prunus mume])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           F+K   H +     +CVRRRVMKSV ANPYCSEAAAKDAMEAVWDVCYNDTQPFDR+P
Sbjct: 143 FVKIRGHEQ-----DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

BLAST of CmoCh15G003830 vs. NCBI nr
Match: gi|595967299|ref|XP_007217268.1| (hypothetical protein PRUPE_ppa011801mg [Prunus persica])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           F+K   H +     +CVRRRVMKSV ANPYCSEAAAKDAMEAVWDVCYNDTQPFDR+P
Sbjct: 143 FVKIRGHEQ-----DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

BLAST of CmoCh15G003830 vs. NCBI nr
Match: gi|1009159174|ref|XP_015897671.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Ziziphus jujuba])

HSP 1 Score: 92.4 bits (228), Expect = 6.2e-16
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           F+K   H +     +CVRRRVMKSV ANPYCSEAAAKDAMEAVWD+CYNDTQPFDR+P
Sbjct: 143 FLKMRGHEQ-----DCVRRRVMKSVMANPYCSEAAAKDAMEAVWDICYNDTQPFDRAP 195

BLAST of CmoCh15G003830 vs. NCBI nr
Match: gi|225452246|ref|XP_002269112.1| (PREDICTED: mitochondrial inner membrane protease ATP23 homolog [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 6.2e-16
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1

Query: 75  FIKNSSHGRTSNLCECVRRRVMKSVAANPYCSEAAAKDAMEAVWDVCYNDTQPFDRSP 133
           ++K   HG+     ECVRRRVMKSV ANP+CSEAAAKDAMEAVWDVCYNDT+PFDR+P
Sbjct: 143 YLKVRGHGQ-----ECVRRRVMKSVTANPHCSEAAAKDAMEAVWDVCYNDTKPFDRAP 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATP23_ASHGO1.4e-0731.09Mitochondrial inner membrane protease ATP23 OS=Ashbya gossypii (strain ATCC 1089... [more]
ATP23_LODEL4.0e-0730.77Mitochondrial inner membrane protease ATP23 OS=Lodderomyces elongisporus (strain... [more]
ATP23_ASPOR2.6e-0631.13Mitochondrial inner membrane protease atp23 OS=Aspergillus oryzae (strain ATCC 4... [more]
ATP23_PICGU3.4e-0639.73Mitochondrial inner membrane protease ATP23 OS=Meyerozyma guilliermondii (strain... [more]
ATP23_SCLS14.5e-0643.86Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ... [more]
Match NameE-valueIdentityDescription
M1AUF2_SOLTU1.0e-2551.97Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011703 PE=4 SV=1[more]
M5WXF5_PRUPE3.3e-1675.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011801mg PE=4 SV=1[more]
D7SPY5_VITVI4.3e-1674.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00250 PE=4 SV=... [more]
B9SLT5_RICCO9.6e-1690.91Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1[more]
A0A0A0KSC7_CUCSA9.6e-1690.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G03420.16.0e-1765.52 Ku70-binding family protein[more]
Match NameE-valueIdentityDescription
gi|729377715|ref|XP_010549760.1|5.4e-2042.75PREDICTED: mitochondrial inner membrane protease ATP23 isoform X2 [Tarenaya hass... [more]
gi|645248855|ref|XP_008230483.1|4.8e-1675.86PREDICTED: mitochondrial inner membrane protease ATP23 [Prunus mume][more]
gi|595967299|ref|XP_007217268.1|4.8e-1675.86hypothetical protein PRUPE_ppa011801mg [Prunus persica][more]
gi|1009159174|ref|XP_015897671.1|6.2e-1674.14PREDICTED: mitochondrial inner membrane protease ATP23 [Ziziphus jujuba][more]
gi|225452246|ref|XP_002269112.1|6.2e-1674.14PREDICTED: mitochondrial inner membrane protease ATP23 homolog [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019165Peptidase_M76_ATP23
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G003830.1CmoCh15G003830.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019165Peptidase M76, ATP23PFAMPF09768Peptidase_M76coord: 84..129
score: 9.0
NoneNo IPR availablePANTHERPTHR21711KUB3-PROV PROTEINcoord: 89..132
score: 9.3