CmaCh15G003710 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G003710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial inner membrane protease ATP23
Location	Cma_Chr15 : 1702504 .. 1703087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAACTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTTTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAAGTATGAACAACAAATAAATTGTTTCCTGTTTAATTCGTTTATTCTAATGCTTTTTTAGCAGTTCTCTACAACCGAAGTGTCTGTTCTATGTCTGTATTTTTTCCCTCAATGGATTATTGAATATATGCCTGCATGTCACGGCTCCGATGATGAAGTTCTTGATGGGGAATTTGGAGAAATCCGGATGTGGAATCGGGGATAAGTTCATTGAGAATTCTTCTCATGGTAGAACTTAAAATCTGTGTGTACGCTCATGCTAACTTGAATCTGATCTTGGCAATGATTTCTGGAGGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTCATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACTCAGCCATTTGATAGAGCTCCCTGA

mRNA sequence

ATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAACTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTTTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAATTCTCTACAACCGAAGTGTCTGTTCTATGTCTGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTCATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACTCAGCCATTTGATAGAGCTCCCTGA

Coding sequence (CDS)

ATGACGCGAACCCATTACCCATTTGTAGATGGGGCTGCATCAACCGCCAAGAAACTGAAACTAGAAACTGAAACATGGATCAAATCGCTGGTTTTCTGCCGTCAACGGTGCCGGACTAAGGAGGAATGCGAGGACACGATTCGAAGAAATCTCCGAATTCTCTACAACCGAAGTGTCTGTTCTATGTCTGAGTGTGTGAGGAGAAGAGTGATGAAATCAGTGGCTGCTCATCCTTACTGCTCAGAAGCTGCTGCAAAAGATGCCATGGAAGCTGTCTGGGATGTTTGTTATAATGATACTCAGCCATTTGATAGAGCTCCCTGA

Protein sequence

MTRTHYPFVDGAASTAKKLKLETETWIKSLVFCRQRCRTKEECEDTIRRNLRILYNRSVCSMSECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP

Homology

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BLAST of CmaCh15G003710 vs. Swiss-Prot
Match: ATP23_SCLS1 (Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atp23 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSE-AAAKDAMEAVWDVCYNDTQPFD 105
           ECVRRR +KSV A P+C +   A   +  VWD CY+DT+PFD
Sbjct: 199 ECVRRRAVKSVLARPWCKDDVQAVKVVNEVWDSCYSDTRPFD 240

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BLAST of CmaCh15G003710 vs. TrEMBL
Match: M5WXF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011801mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWDVCYNDTQPFDRAP
Sbjct: 152 DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

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BLAST of CmaCh15G003710 vs. TrEMBL
Match: A0A0A0KSC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           ECVRRRVMKS+ A+PYC EAAAKDAMEAVWDVCYNDTQPFDRAP
Sbjct: 152 ECVRRRVMKSLVANPYCPEAAAKDAMEAVWDVCYNDTQPFDRAP 195

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BLAST of CmaCh15G003710 vs. TrEMBL
Match: A0A061ECF4_THECC (Ku70-binding family protein OS=Theobroma cacao GN=TCM_017026 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-15
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWD+CYNDT+PFDRAP
Sbjct: 167 DCVRRRVMKSVTANPYCSEAAAKDAMEAVWDICYNDTKPFDRAP 210

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BLAST of CmaCh15G003710 vs. TrEMBL
Match: A0A068V9K1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019080001 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWDVCYNDT+PFDRAP
Sbjct: 152 DCVRRRVMKSVMANPYCSEAAAKDAMEAVWDVCYNDTKPFDRAP 195

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BLAST of CmaCh15G003710 vs. TrEMBL
Match: B9SLT5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           ECVRRRVMKS+ A+PYCSEAAAKDAMEAVWDVCYNDT+PFDRAP
Sbjct: 144 ECVRRRVMKSMIANPYCSEAAAKDAMEAVWDVCYNDTKPFDRAP 187

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BLAST of CmaCh15G003710 vs. TAIR10
Match: AT3G03420.1 (AT3G03420.1 Ku70-binding family protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-16
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           EC++RRV+KS+  +PYCSE AAKDAMEAVWD CYNDT+PFDRAP
Sbjct: 151 ECIKRRVLKSLRGNPYCSEVAAKDAMEAVWDTCYNDTKPFDRAP 194

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BLAST of CmaCh15G003710 vs. NCBI nr
Match: gi|645248855|ref|XP_008230483.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Prunus mume])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWDVCYNDTQPFDRAP
Sbjct: 152 DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

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BLAST of CmaCh15G003710 vs. NCBI nr
Match: gi|595967299|ref|XP_007217268.1| (hypothetical protein PRUPE_ppa011801mg [Prunus persica])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWDVCYNDTQPFDRAP
Sbjct: 152 DCVRRRVMKSVIANPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

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BLAST of CmaCh15G003710 vs. NCBI nr
Match: gi|1009159174|ref|XP_015897671.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Ziziphus jujuba])

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV A+PYCSEAAAKDAMEAVWD+CYNDTQPFDRAP
Sbjct: 152 DCVRRRVMKSVMANPYCSEAAAKDAMEAVWDICYNDTQPFDRAP 195

[Close]

BLAST of CmaCh15G003710 vs. NCBI nr
Match: gi|747099459|ref|XP_011097786.1| (PREDICTED: mitochondrial inner membrane protease ATP23 [Sesamum indicum])

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +C+RRRVMKS+AA+PYCSEAAAKDAMEAVWDVCYNDT+PFDRAP
Sbjct: 155 DCIRRRVMKSLAANPYCSEAAAKDAMEAVWDVCYNDTKPFDRAP 198

[Close]

BLAST of CmaCh15G003710 vs. NCBI nr
Match: gi|694426323|ref|XP_009340846.1| (PREDICTED: mitochondrial inner membrane protease ATP23-like [Pyrus x bretschneideri])

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 64  ECVRRRVMKSVAAHPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 108
           +CVRRRVMKSV ++PYCSEAAAKDAMEAVWDVCYNDTQPFDRAP
Sbjct: 152 DCVRRRVMKSVISNPYCSEAAAKDAMEAVWDVCYNDTQPFDRAP 195

The following BLAST results are available for this feature:

BLAST of CmaCh15G003710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP23_SCLS1	8.1e-06	54.76	Mitochondrial inner membrane protease atp23 OS=Sclerotinia sclerotiorum (strain ...	[more]

BLAST of CmaCh15G003710 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WXF5_PRUPE	1.0e-15	93.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011801mg PE=4 SV=1	[more]
A0A0A0KSC7_CUCSA	3.0e-15	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517840 PE=4 SV=1	[more]
A0A061ECF4_THECC	3.0e-15	88.64	Ku70-binding family protein OS=Theobroma cacao GN=TCM_017026 PE=4 SV=1	[more]
A0A068V9K1_COFCA	3.0e-15	90.91	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019080001 PE=4 SV=1	[more]
B9SLT5_RICCO	3.0e-15	90.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1	[more]

BLAST of CmaCh15G003710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03420.1	2.4e-16	77.27	Ku70-binding family protein	[more]

BLAST of CmaCh15G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645248855\|ref\|XP_008230483.1\|	1.5e-15	93.18	PREDICTED: mitochondrial inner membrane protease ATP23 [Prunus mume]	[more]
gi\|595967299\|ref\|XP_007217268.1\|	1.5e-15	93.18	hypothetical protein PRUPE_ppa011801mg [Prunus persica]	[more]
gi\|1009159174\|ref\|XP_015897671.1\|	1.9e-15	90.91	PREDICTED: mitochondrial inner membrane protease ATP23 [Ziziphus jujuba]	[more]
gi\|747099459\|ref\|XP_011097786.1\|	3.3e-15	88.64	PREDICTED: mitochondrial inner membrane protease ATP23 [Sesamum indicum]	[more]
gi\|694426323\|ref\|XP_009340846.1\|	3.3e-15	90.91	PREDICTED: mitochondrial inner membrane protease ATP23-like [Pyrus x bretschneid...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019165	Peptidase_M76_ATP23

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G003710.1	CmaCh15G003710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019165	Peptidase M76, ATP23	PFAM	PF09768	Peptidase_M76	coord: 62..104 score: 1.0
None	No IPR available	PANTHER	PTHR21711	KUB3-PROV PROTEIN	coord: 64..107 score: 8.9
None	No IPR available	PANTHER	PTHR21711:SF0	MITOCHONDRIAL INNER MEMBRANE PROTEASE ATP23 HOMOLOG	coord: 64..107 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G003710	Cucsa.011040	Cucumber (Gy14) v1	cgycmaB0542
CmaCh15G003710	Cla004640	Watermelon (97103) v1	cmawmB252
CmaCh15G003710	Csa5G517840	Cucumber (Chinese Long) v2	cmacuB300
CmaCh15G003710	MELO3C021605	Melon (DHL92) v3.5.1	cmameB251
CmaCh15G003710	ClCG09G019490	Watermelon (Charleston Gray)	cmawcgB244
CmaCh15G003710	CSPI05G17980	Wild cucumber (PI 183967)	cmacpiB305
CmaCh15G003710	CmoCh04G027930	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G003710	CmoCh15G003830	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G003710	Lsi02G016110	Bottle gourd (USVL1VR-Ls)	cmalsiB272
CmaCh15G003710	Cp4.1LG01g23620	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G003710	MELO3C021605.2	Melon (DHL92) v3.6.1	cmamedB285
CmaCh15G003710	CsaV3_5G026890	Cucumber (Chinese Long) v3	cmacucB0354
CmaCh15G003710	Cla97C09G180930	Watermelon (97103) v2	cmawmbB322
CmaCh15G003710	Bhi06G000497	Wax gourd	cmawgoB0380
CmaCh15G003710	CsGy5G017660	Cucumber (Gy14) v2	cgybcmaB610
CmaCh15G003710	Carg04479	Silver-seed gourd	carcmaB0961
CmaCh15G003710	Carg02334	Silver-seed gourd	carcmaB0362

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G003710	CmaCh04G026650	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G003710	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G003710	Silver-seed gourd	carcmaB0522
CmaCh15G003710	Cucurbita maxima (Rimu)	cmacmaB133
CmaCh15G003710	Cucurbita moschata (Rifu)	cmacmoB284