CmoCh13G008980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G008980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(LOB domain protein) (25)
LocationCmo_Chr13 : 8029265 .. 8029744 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA

mRNA sequence

ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA

Coding sequence (CDS)

ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA
Homology
[Close]
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.3e-48
Identity = 93/136 (68.38%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 6   LATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVL 65
           +A+ +N Y SPCAACKFLRRKC+ GCIFAPYFPPEEP KFANVHK+FGASNV KLLNE+L
Sbjct: 1   MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query: 66  PHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFS 125
           PHQR+DAV SLAY+AEAR+RDPVYGCV AIS+LQ+QV RLQ ELDAA A L  Y  +  +
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSA 120

Query: 126 T---------PFSPQP 133
                      F PQP
Sbjct: 121 AGAPGNVVDLVFQPQP 136

[Close]
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 171.8 bits (434), Expect = 6.1e-42
Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           +N+  SPCAACKFLRRKC + C+FAPYFPPEEP KFANVH++FGASNV+K+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYS 121
           +DAV SLAY+AEAR++DPVYGCV AIS LQ+QV RLQ EL+   A L+ Y+
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-38
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCAACKFLRRKC   C+FAPYFPP++PQKFANVHKVFGASNV KLLNE+ P QR+DAV 
Sbjct: 8   SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVN 67

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLY 120
           SLAY+A+ R+RDPVYGCV  IS LQ Q+++LQ +L  AK+ L  Y
Sbjct: 68  SLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-37
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCAACKFLRRKC   C+FAPYFPP++PQKFA VHKVFGASNVAKLLNE+  +QR+DAV 
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQI 134
           SL Y+AEAR+RDPVYGCV  IS LQ +++++ ++L+ AK  L  Y       P   QP  
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL-QPHF 125

Query: 135 ISPP 139
           +S P
Sbjct: 126 MSLP 128

[Close]
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 71/105 (67.62%), Postives = 86/105 (81.90%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCAACKFLRRKC   C+FAPYFPP+ PQKF +VH+VFGASNV KLLNE+ P+QR+DAV 
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLY 120
           SLAY+A+ R+RDPVYGCVA IS LQ+ +++LQ +L  AK  L  Y
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]
BLAST of CmoCh13G008980 vs. TrEMBL
Match: A0A0A0LTL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046305 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-68
Identity = 135/169 (79.88%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 3   MGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62
           MGS  T +NHYYSPCAACKFLRRKC+AGC+FAPYFPPEEPQKFANVHKVFGASNVAKLLN
Sbjct: 1   MGSTTT-SNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLN 60

Query: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCT 122
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQVQRLQ ELDAAKARL LYSCT
Sbjct: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCT 120

Query: 123 DFSTPFSPQPQIISP---PLLW---------NHNDIVSANSSVYFNGGI 160
           DFSTPF P  QII+    P++W         NHNDI   N S+YFNGGI
Sbjct: 121 DFSTPFLPHSQIINTPHHPVIWNNNSNYNINNHNDI--NNPSMYFNGGI 166

[Close]
BLAST of CmoCh13G008980 vs. TrEMBL
Match: A0A164ZY59_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016033 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.2e-50
Identity = 102/147 (69.39%), Postives = 120/147 (81.63%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           +N Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+LPHQR
Sbjct: 4   SNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFS 129
           +DAV SLAY+AEAR+RDPVYGCV AISFLQ+QV+RLQ ELDAA A L+ ++C+D S P  
Sbjct: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQKELDAANADLIRFACSD-SLPAL 123

Query: 130 PQPQ----IISPPLLWNHNDIVSANSS 153
           PQ Q    +I+ P   N ND++  + S
Sbjct: 124 PQTQRPVDLITTPN--NINDLIGLSGS 147

[Close]
BLAST of CmoCh13G008980 vs. TrEMBL
Match: K7KVP3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+LPHQR
Sbjct: 16  SSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 75

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFS 129
           +DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELD+A A LL Y+C D      
Sbjct: 76  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDM----- 135

Query: 130 PQPQIISPPLLWNHNDIVSANSSVYFNGG 159
           P P +  PP +   + I    +     GG
Sbjct: 136 PPPSLSVPPQMPQRSFIARFGNESASGGG 159

[Close]
BLAST of CmoCh13G008980 vs. TrEMBL
Match: A0A0B2QCG3_GLYSO (Protein LATERAL ORGAN BOUNDARIES OS=Glycine soja GN=glysoja_012186 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+LPHQR
Sbjct: 4   SSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFS 129
           +DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELD+A A LL Y+C D      
Sbjct: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDM----- 123

Query: 130 PQPQIISPPLLWNHNDIVSANSSVYFNGG 159
           P P +  PP +   + I    +     GG
Sbjct: 124 PPPSLSVPPQMPQRSFIARFGNESASGGG 147

[Close]
BLAST of CmoCh13G008980 vs. TrEMBL
Match: I6QHQ7_SOYBN (Elongated petiolule 1 (Fragment) OS=Glycine max GN=ELP1 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+LPHQR
Sbjct: 4   SSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFS 129
           +DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELD+A A LL Y+C D      
Sbjct: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDM----- 123

Query: 130 PQPQIISPPLLWNHNDIVSANSSVYFNGG 159
           P P +  PP +   + I    +     GG
Sbjct: 124 PPPSLSVPPQMPQRSFIARFGNESASGGG 147

[Close]
BLAST of CmoCh13G008980 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-49
Identity = 93/136 (68.38%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 6   LATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVL 65
           +A+ +N Y SPCAACKFLRRKC+ GCIFAPYFPPEEP KFANVHK+FGASNV KLLNE+L
Sbjct: 1   MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query: 66  PHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFS 125
           PHQR+DAV SLAY+AEAR+RDPVYGCV AIS+LQ+QV RLQ ELDAA A L  Y  +  +
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSA 120

Query: 126 T---------PFSPQP 133
                      F PQP
Sbjct: 121 AGAPGNVVDLVFQPQP 136

[Close]
BLAST of CmoCh13G008980 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-43
Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           +N+  SPCAACKFLRRKC + C+FAPYFPPEEP KFANVH++FGASNV+K+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYS 121
           +DAV SLAY+AEAR++DPVYGCV AIS LQ+QV RLQ EL+   A L+ Y+
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of CmoCh13G008980 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-39
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCAACKFLRRKC   C+FAPYFPP++PQKFANVHKVFGASNV KLLNE+ P QR+DAV 
Sbjct: 8   SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVN 67

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLY 120
           SLAY+A+ R+RDPVYGCV  IS LQ Q+++LQ +L  AK+ L  Y
Sbjct: 68  SLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of CmoCh13G008980 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-38
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCAACKFLRRKC   C+FAPYFPP++PQKFA VHKVFGASNVAKLLNE+  +QR+DAV 
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQI 134
           SL Y+AEAR+RDPVYGCV  IS LQ +++++ ++L+ AK  L  Y       P   QP  
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL-QPHF 125

Query: 135 ISPP 139
           +S P
Sbjct: 126 MSLP 128

[Close]
BLAST of CmoCh13G008980 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 150.6 bits (379), Expect = 8.2e-37
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = 1 

Query: 15  SPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 74
           SPCA+CK LRR+C   CIFAPYFPP++P KFA VHKVFGASNV+K+L E+  HQR DAV 
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 75  SLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQI 134
           SL ++A AR+RDPVYGCV AIS+LQ QV +LQ +L  A+A +L     +  T      Q+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT-LQSHHQV 126

Query: 135 IS-----PPLLWNHNDIVSANSS 153
           +        LL N+N+I + N++
Sbjct: 127 LELDQDHKALLLNNNNINNCNTN 148

[Close]
BLAST of CmoCh13G008980 vs. NCBI nr
Match: gi|700209238|gb|KGN64334.1| (hypothetical protein Csa_1G046305 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.2e-68
Identity = 135/169 (79.88%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 3   MGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLN 62
           MGS  T +NHYYSPCAACKFLRRKC+AGC+FAPYFPPEEPQKFANVHKVFGASNVAKLLN
Sbjct: 1   MGSTTT-SNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLN 60

Query: 63  EVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCT 122
           EVLPHQRQDAVVSLAY+AEARIRDPVYGCV AISFLQKQVQRLQ ELDAAKARL LYSCT
Sbjct: 61  EVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCT 120

Query: 123 DFSTPFSPQPQIISP---PLLW---------NHNDIVSANSSVYFNGGI 160
           DFSTPF P  QII+    P++W         NHNDI   N S+YFNGGI
Sbjct: 121 DFSTPFLPHSQIINTPHHPVIWNNNSNYNINNHNDI--NNPSMYFNGGI 166

[Close]
BLAST of CmoCh13G008980 vs. NCBI nr
Match: gi|694370224|ref|XP_009362953.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES [Pyrus x bretschneideri])

HSP 1 Score: 206.8 bits (525), Expect = 2.7e-50
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 6   LATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVL 65
           +A+ ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+L
Sbjct: 1   MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELL 60

Query: 66  PHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFS 125
           PHQR+DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELDAA A L+ Y+C + +
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIHYACNEIT 120

Query: 126 TPFSPQP 133
           T   P P
Sbjct: 121 TTVLPSP 127

[Close]
BLAST of CmoCh13G008980 vs. NCBI nr
Match: gi|657965481|ref|XP_008374398.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES [Malus domestica])

HSP 1 Score: 206.5 bits (524), Expect = 3.6e-50
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 6   LATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVL 65
           +A+ ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+L
Sbjct: 1   MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELL 60

Query: 66  PHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFS 125
           PHQR+DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELDAA A L+ Y+C + +
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACXELT 120

Query: 126 TPFSPQP 133
           T   P P
Sbjct: 121 TTVLPPP 127

[Close]
BLAST of CmoCh13G008980 vs. NCBI nr
Match: gi|1009130747|ref|XP_015882467.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Ziziphus jujuba])

HSP 1 Score: 206.1 bits (523), Expect = 4.6e-50
Identity = 97/135 (71.85%), Postives = 114/135 (84.44%), Query Frame = 1 

Query: 5   SLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEV 64
           S ++ ++ Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+
Sbjct: 4   SSSSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNEL 63

Query: 65  LPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDF 124
           LPHQR+DAV SLAY+AEAR+RDPVYGCV AISFLQ+QVQRLQ ELDAA A L+ ++C + 
Sbjct: 64  LPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEI 123

Query: 125 STPFS-PQPQIISPP 139
            TP + P PQ +  P
Sbjct: 124 PTPAALPPPQPLMAP 138

[Close]
BLAST of CmoCh13G008980 vs. NCBI nr
Match: gi|1021038824|gb|KZM96605.1| (hypothetical protein DCAR_016033 [Daucus carota subsp. sativus])

HSP 1 Score: 205.7 bits (522), Expect = 6.1e-50
Identity = 102/147 (69.39%), Postives = 120/147 (81.63%), Query Frame = 1 

Query: 10  TNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQR 69
           +N Y SPCAACKFLRRKC+ GCIFAPYFPPEEPQKFANVHK+FGASNV KLLNE+LPHQR
Sbjct: 4   SNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63

Query: 70  QDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFS 129
           +DAV SLAY+AEAR+RDPVYGCV AISFLQ+QV+RLQ ELDAA A L+ ++C+D S P  
Sbjct: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQKELDAANADLIRFACSD-SLPAL 123

Query: 130 PQPQ----IISPPLLWNHNDIVSANSS 153
           PQ Q    +I+ P   N ND++  + S
Sbjct: 124 PQTQRPVDLITTPN--NINDLIGLSGS 147

The following BLAST results are available for this feature:
BLAST of CmoCh13G008980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LOB_ARATH4.3e-4868.38Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1[more]
LBD25_ARATH6.1e-4270.27LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3[more]
LBD6_ARATH5.3e-3870.48LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1[more]
LBD36_ARATH5.9e-3761.29LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1[more]
LBD6_ORYSJ1.3e-3667.62LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=... [more]
BLAST of CmoCh13G008980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTL0_CUCSA1.5e-6879.88Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046305 PE=4 SV=1[more]
A0A164ZY59_DAUCA4.2e-5069.39Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016033 PE=4 SV=1[more]
K7KVP3_SOYBN9.4e-5066.44Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2QCG3_GLYSO9.4e-5066.44Protein LATERAL ORGAN BOUNDARIES OS=Glycine soja GN=glysoja_012186 PE=4 SV=1[more]
I6QHQ7_SOYBN9.4e-5066.44Elongated petiolule 1 (Fragment) OS=Glycine max GN=ELP1 PE=4 SV=1[more]
BLAST of CmoCh13G008980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63090.22.4e-4968.38 Lateral organ boundaries (LOB) domain family protein[more]
AT3G27650.13.4e-4370.27 LOB domain-containing protein 25[more]
AT1G65620.13.0e-3970.48 Lateral organ boundaries (LOB) domain family protein[more]
AT5G66870.13.3e-3861.29 ASYMMETRIC LEAVES 2-like 1[more]
AT2G30130.18.2e-3753.15 Lateral organ boundaries (LOB) domain family protein[more]
BLAST of CmoCh13G008980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209238|gb|KGN64334.1|2.2e-6879.88hypothetical protein Csa_1G046305 [Cucumis sativus][more]
gi|694370224|ref|XP_009362953.1|2.7e-5074.80PREDICTED: protein LATERAL ORGAN BOUNDARIES [Pyrus x bretschneideri][more]
gi|657965481|ref|XP_008374398.1|3.6e-5074.80PREDICTED: protein LATERAL ORGAN BOUNDARIES [Malus domestica][more]
gi|1009130747|ref|XP_015882467.1|4.6e-5071.85PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Ziziphus jujuba][more]
gi|1021038824|gb|KZM96605.1|6.1e-5069.39hypothetical protein DCAR_016033 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G008980.1CmoCh13G008980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 16..113
score: 2.0
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 15..116
score: 2
NoneNo IPR availableunknownCoilCoilcoord: 95..122
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 13..136
score: 1.1
NoneNo IPR availablePANTHERPTHR31301:SF17SUBFAMILY NOT NAMEDcoord: 13..136
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G008980Cucsa.098680Cucumber (Gy14) v1cgycmoB0203
CmoCh13G008980Cucsa.196600Cucumber (Gy14) v1cgycmoB0582
CmoCh13G008980CmaCh10G001050Cucurbita maxima (Rimu)cmacmoB081
CmoCh13G008980CmaCh13G008660Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G008980CmaCh18G001850Cucurbita maxima (Rimu)cmacmoB399
CmoCh13G008980Cla019220Watermelon (97103) v1cmowmB204
CmoCh13G008980Cla003443Watermelon (97103) v1cmowmB183
CmoCh13G008980Csa1G004170Cucumber (Chinese Long) v2cmocuB194
CmoCh13G008980MELO3C002290Melon (DHL92) v3.5.1cmomeB180
CmoCh13G008980MELO3C026269Melon (DHL92) v3.5.1cmomeB193
CmoCh13G008980ClCG01G013400Watermelon (Charleston Gray)cmowcgB178
CmoCh13G008980ClCG06G017270Watermelon (Charleston Gray)cmowcgB197
CmoCh13G008980CSPI01G08730Wild cucumber (PI 183967)cmocpiB204
CmoCh13G008980CSPI01G01120Wild cucumber (PI 183967)cmocpiB197
CmoCh13G008980Lsi06G015820Bottle gourd (USVL1VR-Ls)cmolsiB208
CmoCh13G008980Lsi02G004020Bottle gourd (USVL1VR-Ls)cmolsiB198
CmoCh13G008980Cp4.1LG20g02580Cucurbita pepo (Zucchini)cmocpeB201
CmoCh13G008980Cp4.1LG18g08740Cucurbita pepo (Zucchini)cmocpeB197
CmoCh13G008980Cp4.1LG04g15850Cucurbita pepo (Zucchini)cmocpeB214
CmoCh13G008980MELO3C002290.2Melon (DHL92) v3.6.1cmomedB202
CmoCh13G008980MELO3C026269.2Melon (DHL92) v3.6.1cmomedB215
CmoCh13G008980CsaV3_1G001230Cucumber (Chinese Long) v3cmocucB0227
CmoCh13G008980CsaV3_3G042760Cucumber (Chinese Long) v3cmocucB0245
CmoCh13G008980CsaV3_1G008750Cucumber (Chinese Long) v3cmocucB0234
CmoCh13G008980Cla97C10G196680Watermelon (97103) v2cmowmbB201
CmoCh13G008980Cla97C01G012460Watermelon (97103) v2cmowmbB197
CmoCh13G008980Cla97C06G126950Watermelon (97103) v2cmowmbB224
CmoCh13G008980Cla97C09G180710Watermelon (97103) v2cmowmbB226
CmoCh13G008980Bhi02G000377Wax gourdcmowgoB0277
CmoCh13G008980Bhi06G000463Wax gourdcmowgoB0231
CmoCh13G008980Bhi08G001340Wax gourdcmowgoB0260
CmoCh13G008980CsGy1G001160Cucumber (Gy14) v2cgybcmoB062
CmoCh13G008980CsGy1G008660Cucumber (Gy14) v2cgybcmoB067
CmoCh13G008980CsGy3G037730Cucumber (Gy14) v2cgybcmoB278
CmoCh13G008980Carg10325Silver-seed gourdcarcmoB0496
CmoCh13G008980Carg07659Silver-seed gourdcarcmoB1349
CmoCh13G008980Carg06744Silver-seed gourdcarcmoB0671
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G008980CmoCh10G001090Cucurbita moschata (Rifu)cmocmoB051
CmoCh13G008980CmoCh11G000770Cucurbita moschata (Rifu)cmocmoB087
CmoCh13G008980CmoCh18G001460Cucurbita moschata (Rifu)cmocmoB171
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G008980Watermelon (97103) v2cmowmbB211
CmoCh13G008980Cucumber (Chinese Long) v2cmocuB202
CmoCh13G008980Melon (DHL92) v3.5.1cmomeB183
CmoCh13G008980Cucurbita pepo (Zucchini)cmocpeB183
CmoCh13G008980Bottle gourd (USVL1VR-Ls)cmolsiB192
CmoCh13G008980Cucumber (Gy14) v2cgybcmoB058
CmoCh13G008980Melon (DHL92) v3.6.1cmomedB206
CmoCh13G008980Cucumber (Chinese Long) v3cmocucB0222