Cucsa.196600 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.196600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	LOB domain-containing protein, putative
Location	scaffold01357 : 202198 .. 202711 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTCAACTCTCTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCGGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGCCCAGCAGCCTCGGCACTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAACTGGATATTATAATCATCTTCCTGCTTTTTCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTG

mRNA sequence

ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTCAACTCTCTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCGGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGCCCAGCAGCCTCGGCACTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAACTGGATATTATAATCATCTTCCTGCTTTTTCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTG

Coding sequence (CDS)

ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTCAACTCTCTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCGGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGCCCAGCAGCCTCGGCACTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAACTGGATATTATAATCATCTTCCTGCTTTTTCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTG

Protein sequence

MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTSX

Homology

[Close]

BLAST of Cucsa.196600 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-57
Identity = 121/175 (69.14%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 2   ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +    A
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLS-TSAA 122

Query: 122 GVSHQVV----QPSSLGTR--PRALDQYHTSSTTGYYNHLP---AFSMAYPLPWN 168
           G    VV    QP  L ++  P     Y  S  +   N +P     S    LPWN
Sbjct: 123 GAPGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN 176

[Close]

BLAST of Cucsa.196600 vs. Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-46
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 4   SSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63
           S+  NSPCAACKFLRRKC   C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFA 115
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+R+A
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Cucsa.196600 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 3   SSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQ 62
           +SSS NSPCAACKFLRRKC P C+FAPYFPP++PQKFANVHK+FGASNVTKLLNEL P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAG 122
           REDAVNSLAYEA+ R+RDPVYGCVG IS LQ Q+++LQ +L  A ++L ++    +    
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY--QSLGILA 121

Query: 123 VSHQ-----VVQPSSLGTRPRALDQYH 145
            +HQ     ++  ++ GT     D YH
Sbjct: 122 ATHQSLGINLLAGAADGTATAVRDHYH 146

[Close]

BLAST of Cucsa.196600 vs. Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-40
Identity = 74/105 (70.48%), Postives = 90/105 (85.71%), Query Frame = 1


Query: 9   SPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 68
           SPCAACKFLRRKC P C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 69  SLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRF 114
           SLAYEA+ R+RDPVYGCV  IS LQR +++LQ++L  A  +L ++
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of Cucsa.196600 vs. Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-40
Identity = 74/105 (70.48%), Postives = 90/105 (85.71%), Query Frame = 1


Query: 9   SPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 68
           SPCAACKFLRRKC P C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 69  SLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRF 114
           SLAYEA+ R+RDPVYGCV  IS LQR +++LQ++L  A  +L ++
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of Cucsa.196600 vs. TrEMBL
Match: A0A0A0LU81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004170 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.0e-95
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 121 AGVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           AGVSHQVVQPSSLG+RPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS
Sbjct: 121 AGVSHQVVQPSSLGSRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 171

[Close]

BLAST of Cucsa.196600 vs. TrEMBL
Match: A0A061FUD5_THECC (Lateral organ boundaries domain family protein OS=Theobroma cacao GN=TCM_012190 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-67
Identity = 135/177 (76.27%), Postives = 145/177 (81.92%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACN+IP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNDIPT 120

Query: 121 A-----GVSHQVVQPSSLGTRPRALD-QYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           A     G S   VQP +   RP   + +       G+Y+   AF + Y  PWN+N+S
Sbjct: 121 ALPAPPGASS--VQPLTPRHRPADFNRRIGNEGAGGFYHPTGAFPLPYSFPWNDNSS 175

[Close]

BLAST of Cucsa.196600 vs. TrEMBL
Match: B9IEW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09370g PE=4 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 2.0e-66
Identity = 133/176 (75.57%), Postives = 141/176 (80.11%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQV RLQKELD+ANADLIR+ACNEIP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYACNEIPT 120

Query: 121 A-----GVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           A     G S   +Q  +   RP   +     +  GYY   P   + Y LPWN+N S
Sbjct: 121 ALPAPPGASS--IQSMAPRQRPVEYNNRRMGNEGGYY-QAPGMPIPYTLPWNDNPS 173

[Close]

BLAST of Cucsa.196600 vs. TrEMBL
Match: A0A067KGT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11425 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 134/180 (74.44%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACN+IP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNDIPT 120

Query: 121 A--GVS----HQVV---QPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
              G +    HQ V   +P++ GT        H     G+Y       ++Y  PWN+N S
Sbjct: 121 TLPGATSIHHHQPVHRQRPTAAGT--------HDQFNRGFYQTPGVPLLSYNFPWNDNPS 172

[Close]

BLAST of Cucsa.196600 vs. TrEMBL
Match: B9I3C8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08540g PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 129/172 (75.00%), Postives = 136/172 (79.07%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAAN+DLIR+AC+EI  
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANSDLIRYACSEIST 120

Query: 121 A-GVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           A           S+  R R ++        G   H P     Y LPWN+N S
Sbjct: 121 ALPAPPGASSIQSMAPRQRPIEYNRRMGNEGGNYHAPGMPFPYTLPWNDNPS 172

[Close]

BLAST of Cucsa.196600 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-59
Identity = 121/175 (69.14%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 2   ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 61
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 121
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +    A
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLS-TSAA 122

Query: 122 GVSHQVV----QPSSLGTR--PRALDQYHTSSTTGYYNHLP---AFSMAYPLPWN 168
           G    VV    QP  L ++  P     Y  S  +   N +P     S    LPWN
Sbjct: 123 GAPGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN 176

[Close]

BLAST of Cucsa.196600 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-48
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 4   SSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 63
           S+  NSPCAACKFLRRKC   C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFA 115
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+R+A
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Cucsa.196600 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 180.6 bits (457), Expect = 8.0e-46
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 3   SSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQ 62
           +SSS NSPCAACKFLRRKC P C+FAPYFPP++PQKFANVHK+FGASNVTKLLNEL P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAG 122
           REDAVNSLAYEA+ R+RDPVYGCVG IS LQ Q+++LQ +L  A ++L ++    +    
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY--QSLGILA 121

Query: 123 VSHQ-----VVQPSSLGTRPRALDQYH 145
            +HQ     ++  ++ GT     D YH
Sbjct: 122 ATHQSLGINLLAGAADGTATAVRDHYH 146

[Close]

BLAST of Cucsa.196600 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 160.6 bits (405), Expect = 8.5e-40
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 8   NSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAV 67
           +SPCA+CK LRR+C   CIFAPYFPP++P KFA VHK+FGASNV+K+L EL  HQR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 68  NSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQV 127
           NSL +EA ARVRDPVYGCVGAIS+LQ QV +LQ +L  A A+++       P     HQV
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQV 125

Query: 128 VQ 130
           ++
Sbjct: 126 LE 127

[Close]

BLAST of Cucsa.196600 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-39
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSS   SPCAACKFLRRKC   C+FAPYFPP++PQKFA VHK+FGASNV KLLNEL  
Sbjct: 1   MASSS---SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELAS 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           +QREDAVNSL YEAEAR+RDPVYGCVG IS LQ +++++  +L+ A  +L  +     P 
Sbjct: 61  NQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVG---PQ 120

Query: 121 AGVSHQVVQPSSLGTRPRALDQYHTSS---TTGYYNHLPAFSM 161
           A +   ++QP  +   P+      +S+   T  ++N LP  ++
Sbjct: 121 AML--PILQPHFMSLPPQPQRPSSSSASVLTQHHHNLLPMMAI 155

[Close]

BLAST of Cucsa.196600 vs. NCBI nr
Match: gi|449440995|ref|XP_004138269.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.1e-94
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 121 AGVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           AGVSHQVVQPSSLG+RPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS
Sbjct: 121 AGVSHQVVQPSSLGSRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 171

[Close]

BLAST of Cucsa.196600 vs. NCBI nr
Match: gi|659129097|ref|XP_008464527.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 7.2e-89
Identity = 164/172 (95.35%), Postives = 165/172 (95.93%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 121 AGVSHQVVQPSSLGTRPR-ALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           AGVSHQVVQPS   TRPR ALDQYHTSST+GYYNHLPAF MAYPL WNEN S
Sbjct: 121 AGVSHQVVQPSLGSTRPRAALDQYHTSSTSGYYNHLPAFPMAYPLSWNENAS 172

[Close]

BLAST of Cucsa.196600 vs. NCBI nr
Match: gi|590663896|ref|XP_007036350.1| (Lateral organ boundaries domain family protein [Theobroma cacao])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 135/177 (76.27%), Postives = 145/177 (81.92%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACN+IP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNDIPT 120

Query: 121 A-----GVSHQVVQPSSLGTRPRALD-QYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           A     G S   VQP +   RP   + +       G+Y+   AF + Y  PWN+N+S
Sbjct: 121 ALPAPPGASS--VQPLTPRHRPADFNRRIGNEGAGGFYHPTGAFPLPYSFPWNDNSS 175

[Close]

BLAST of Cucsa.196600 vs. NCBI nr
Match: gi|566206763|ref|XP_002322187.2| (hypothetical protein POPTR_0015s09370g [Populus trichocarpa])

HSP 1 Score: 260.0 bits (663), Expect = 2.9e-66
Identity = 133/176 (75.57%), Postives = 141/176 (80.11%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQV RLQKELD+ANADLIR+ACNEIP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYACNEIPT 120

Query: 121 A-----GVSHQVVQPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
           A     G S   +Q  +   RP   +     +  GYY   P   + Y LPWN+N S
Sbjct: 121 ALPAPPGASS--IQSMAPRQRPVEYNNRRMGNEGGYY-QAPGMPIPYTLPWNDNPS 173

[Close]

BLAST of Cucsa.196600 vs. NCBI nr
Match: gi|802650814|ref|XP_012079997.1| (PREDICTED: protein LATERAL ORGAN BOUNDARIES [Jatropha curcas])

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 134/180 (74.44%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACN+IP 
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNDIPT 120

Query: 121 A--GVS----HQVV---QPSSLGTRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTS 172
              G +    HQ V   +P++ GT        H     G+Y       ++Y  PWN+N S
Sbjct: 121 TLPGATSIHHHQPVHRQRPTAAGT--------HDQFNRGFYQTPGVPLLSYNFPWNDNPS 172

The following BLAST results are available for this feature:

BLAST of Cucsa.196600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LOB_ARATH	1.1e-57	69.14	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1	[more]
LBD25_ARATH	1.5e-46	78.38	LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3	[more]
LBD6_ARATH	1.4e-44	60.54	LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1	[more]
LBD6_ORYSJ	8.0e-40	70.48	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=...	[more]
LBD6_ORYSI	8.0e-40	70.48	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1	[more]

BLAST of Cucsa.196600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU81_CUCSA	8.0e-95	99.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004170 PE=4 SV=1	[more]
A0A061FUD5_THECC	1.4e-67	76.27	Lateral organ boundaries domain family protein OS=Theobroma cacao GN=TCM_012190 ...	[more]
B9IEW9_POPTR	2.0e-66	75.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09370g PE=4 SV=2	[more]
A0A067KGT1_JATCU	1.3e-65	74.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11425 PE=4 SV=1	[more]
B9I3C8_POPTR	1.3e-65	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08540g PE=4 SV=1	[more]

BLAST of Cucsa.196600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63090.2	6.3e-59	69.14	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	8.5e-48	78.38	LOB domain-containing protein 25	[more]
AT1G65620.1	8.0e-46	60.54	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30130.1	8.5e-40	61.48	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G66870.1	1.1e-39	53.37	ASYMMETRIC LEAVES 2-like 1	[more]

BLAST of Cucsa.196600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440995\|ref\|XP_004138269.1\|	1.1e-94	99.42	PREDICTED: protein LATERAL ORGAN BOUNDARIES [Cucumis sativus]	[more]
gi\|659129097\|ref\|XP_008464527.1\|	7.2e-89	95.35	PREDICTED: protein LATERAL ORGAN BOUNDARIES [Cucumis melo]	[more]
gi\|590663896\|ref\|XP_007036350.1\|	2.0e-67	76.27	Lateral organ boundaries domain family protein [Theobroma cacao]	[more]
gi\|566206763\|ref\|XP_002322187.2\|	2.9e-66	75.57	hypothetical protein POPTR_0015s09370g [Populus trichocarpa]	[more]
gi\|802650814\|ref\|XP_012079997.1\|	1.9e-65	74.44	PREDICTED: protein LATERAL ORGAN BOUNDARIES [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.196600.1	Cucsa.196600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 10..107 score: 3.4
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 9..110 score: 27
None	No IPR available	unknown	Coil	Coil	coord: 89..116 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..168 score: 9.8E
None	No IPR available	PANTHER	PTHR31301:SF17	SUBFAMILY NOT NAMED	coord: 1..168 score: 9.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.196600	Cla019220	Watermelon (97103) v1	cgywmB390
Cucsa.196600	Cla010429	Watermelon (97103) v1	cgywmB379
Cucsa.196600	Cla003443	Watermelon (97103) v1	cgywmB384
Cucsa.196600	Csa1G004170	Cucumber (Chinese Long) v2	cgycuB299
Cucsa.196600	MELO3C002290	Melon (DHL92) v3.5.1	cgymeB359
Cucsa.196600	MELO3C026269	Melon (DHL92) v3.5.1	cgymeB364
Cucsa.196600	ClCG01G013400	Watermelon (Charleston Gray)	cgywcgB361
Cucsa.196600	ClCG09G019240	Watermelon (Charleston Gray)	cgywcgB357
Cucsa.196600	ClCG06G017270	Watermelon (Charleston Gray)	cgywcgB368
Cucsa.196600	CSPI01G01120	Wild cucumber (PI 183967)	cgycpiB310
Cucsa.196600	CSPI01G08730	Wild cucumber (PI 183967)	cgycpiB312
Cucsa.196600	CSPI05G18230	Wild cucumber (PI 183967)	cgycpiB317
Cucsa.196600	CmaCh10G001050	Cucurbita maxima (Rimu)	cgycmaB0573
Cucsa.196600	CmaCh11G000770	Cucurbita maxima (Rimu)	cgycmaB0576
Cucsa.196600	CmaCh13G008660	Cucurbita maxima (Rimu)	cgycmaB0582
Cucsa.196600	CmaCh18G001850	Cucurbita maxima (Rimu)	cgycmaB0588
Cucsa.196600	CmoCh13G008980	Cucurbita moschata (Rifu)	cgycmoB0582
Cucsa.196600	CmoCh11G000770	Cucurbita moschata (Rifu)	cgycmoB0578
Cucsa.196600	CmoCh10G001090	Cucurbita moschata (Rifu)	cgycmoB0575
Cucsa.196600	Lsi02G004020	Bottle gourd (USVL1VR-Ls)	cgylsiB335
Cucsa.196600	Lsi06G015820	Bottle gourd (USVL1VR-Ls)	cgylsiB342
Cucsa.196600	Cp4.1LG04g15850	Cucurbita pepo (Zucchini)	cgycpeB0564
Cucsa.196600	Cp4.1LG18g08740	Cucurbita pepo (Zucchini)	cgycpeB0556
Cucsa.196600	Cp4.1LG20g02580	Cucurbita pepo (Zucchini)	cgycpeB0559
Cucsa.196600	MELO3C002290.2	Melon (DHL92) v3.6.1	cgymedB354
Cucsa.196600	MELO3C026269.2	Melon (DHL92) v3.6.1	cgymedB359
Cucsa.196600	CsaV3_1G008750	Cucumber (Chinese Long) v3	cgycucB316
Cucsa.196600	CsaV3_1G001230	Cucumber (Chinese Long) v3	cgycucB314
Cucsa.196600	Cla97C06G126950	Watermelon (97103) v2	cgywmbB370
Cucsa.196600	Cla97C01G012460	Watermelon (97103) v2	cgywmbB363
Cucsa.196600	Cla97C09G180710	Watermelon (97103) v2	cgywmbB371
Cucsa.196600	Bhi02G000377	Wax gourd	cgywgoB417
Cucsa.196600	Bhi06G000463	Wax gourd	cgywgoB405
Cucsa.196600	Bhi08G001340	Wax gourd	cgywgoB410
Cucsa.196600	Carg10325	Silver-seed gourd	carcgyB0423
Cucsa.196600	Carg20207	Silver-seed gourd	carcgyB1162
Cucsa.196600	Carg07659	Silver-seed gourd	carcgyB1123

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cucsa.196600	Cucsa.098680	Cucumber (Gy14) v1	cgycgyB038

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.196600	Cucurbita moschata (Rifu)	cgycmoB0588
Cucsa.196600	Cucumber (Chinese Long) v2	cgycuB301
Cucsa.196600	Watermelon (Charleston Gray)	cgywcgB369