CmoCh12G006640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G006640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr12 : 4351989 .. 4353933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCCAAACCTTCTTCATCCGCTCTCCTCCAAAACGCAATCGGCTTCCTCGACTTTGGTCCGGCGGAGGGAAAATGAAGAGGGCAGATCGCGACCTTCCTCCCAAATCCTTTTCTTGATCCTCTTTTGTTTTTCTCAATCCTTCTCAATGCATGTTCATCCAGTTTCTCTGAAGGTAAATCCGCATTCGCCATATTCCACTCTTCATCTTTGATTTTGATGTTTCGTTCGGTTCTGTTTACGAATTTTATGATTTATGTTTGTGTTCTCTCGTCGAATTTTGAGAGTGATTTCATTTCTCCGATGCATTTTCTTGTTAGTAATTTTGTGAATTTTCTCTGTCGAATCTTTGATCGACGATTGACTCTGTATTGCATCCTGGAACAAATGCATTGGCTCCGCTGCAATTTTAGACTTGACTGTAGATTTTTGTCCGGCCTTTTGTTTTCTTCTGTAGAATGTGGAAAATTGTTGAATTGGAAGCAGCTGTCTGATCCATAATTATCTCATGTGTGCATGCATAGAAGTGTTTGTGTGATTTTTTGTTTGTTTGTTTGATTTTTCAAAGGAGTGTGCCAGTTAAATTATTTTGTCAAGTATGTGAGTTTACATGAGTAGGGCCTAACAGATAATTTCGACCTATTCATTAAGGAGTGAATAATGTTGAAATCTTTGGAAGAAACATGTACTTATTTATCTAAAATTTTCGATTCAAATGATGAATTTATACCATTTGATTTGTTTATTTTTATTGTTTTGAGTTTGGATATGTGGGAGATGATTTAAATCTTTTTGCGTTTTAGTAAAACCATCTGTTTGAATCGTCAATTTTACTTTAGAGGTACCAAAATTTTCAAAATCTGTAAAGATATTATTAAGATCTACAACCAACAAGTAGCTCTTTTGGTGCATCTGTCATTTAGAACTGTGTTGTTTGGGATTGAGGAGTTTAGTTTCTTGGAGTGAATGTTGGGAAAAGGAAACTCTGTAAGACTTGTTTCAAGTAGTTTTTGTTTCATACATGAACATCTATTCCAGATGTCATGTTCTTGAAACAATTGTTCTGTCAGGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGATGAGGTATGCTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGCTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTCTGTCCTTGGTGCCATCAGCTGTCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAACAAGAACTTCATTCTTCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTGGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCCGAAACCGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCGGTTGTTTCTCCATAAACACTTGGATTACGCCGTCCATTTAATCTTCAAGTTTCTACTGGTTGTCATATTTGTTGTGATTGTCATTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGAAATGTCTTGTTTAACATCTTTTTGTCTATTGCTTTTCTTAATTCTTCTGACTTTGAACAACCAACCAATCTGGAGTTTTATATTTTGAAGATCTTTGGTTGGTTTGATTGAATGAAGCTTTGGGCCCAACTCATCAATTGTATTA

mRNA sequence

TATTCCAAACCTTCTTCATCCGCTCTCCTCCAAAACGCAATCGGCTTCCTCGACTTTGGTCCGGCGGAGGGAAAATGAAGAGGGCAGATCGCGACCTTCCTCCCAAATCCTTTTCTTGATCCTCTTTTGTTTTTCTCAATCCTTCTCAATGCATGTTCATCCAGTTTCTCTGAAGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGATGAGGTATGCTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGCTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTCTGTCCTTGGTGCCATCAGCTGTCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAACAAGAACTTCATTCTTCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTGGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCCGAAACCGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCGGTTGTTTCTCCATAAACACTTGGATTACGCCGTCCATTTAATCTTCAAGTTTCTACTGGTTGTCATATTTGTTGTGATTGTCATTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGAAATGTCTTGTTTAACATCTTTTTGTCTATTGCTTTTCTTAATTCTTCTGACTTTGAACAACCAACCAATCTGGAGTTTTATATTTTGAAGATCTTTGGTTGGTTTGATTGAATGAAGCTTTGGGCCCAACTCATCAATTGTATTA

Coding sequence (CDS)

ATGCATGTTCATCCAGTTTCTCTGAAGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGATGAGGTATGCTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGCTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTCTGTCCTTGGTGCCATCAGCTGTCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAACAAGAACTTCATTCTTCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTGGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCCGAAACCGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCGGTTGTTTCTCCATAAACACTTGGATTACGCCGTCCATTTAATCTTCAAGTTTCTACTGGTTGTCATATTTGTTGTGATTGTCATTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGA

Homology

[Close]

BLAST of CmoCh12G006640 vs. TrEMBL
Match: V7CH03_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 137/262 (52.29%), Postives = 173/262 (66.03%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  IR+K+++    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LCKNCVLGLQ  VL   + QIR+P FI CPWCH LS R++YKGNLK+P KNF
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----ETDAASAR 189
            LLWMVES N    KL  S  GD QP++S                R S         S R
Sbjct: 121 FLLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNR 180

Query: 190 LPGIGRQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFAL 249
             G+  +     LHK LD+ +H   KF L+VIF++I +F +PGSA+IL+LYLL+T++FA+
Sbjct: 181 DVGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAI 240

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 241 PSFLVLYFAYPTIQRLIREITS 260

[Close]

BLAST of CmoCh12G006640 vs. TrEMBL
Match: A0A0D2RKN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63
Identity = 136/265 (51.32%), Postives = 175/265 (66.04%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASN IA I   K+S  + Q   ECSDD E+CS GSRDE LECPICWE FNIVEN+P
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDD-ELCSNGSRDEGLECPICWEPFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LC+NC+LGLQ  VLK+ + QI++P+FI CPWCH +SLR+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNF 120

Query: 130 ILLWMVESFNCNE-GKLEHSFNGDNQPVFSRTSETDAASARLPGIGR------------- 189
            +LWM+ES N +  G    + +GDNQPV S        +  + G+ R             
Sbjct: 121 FILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRS 180

Query: 190 ---------QRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLL 249
                    +R    LHK LD+ +H   KF LV+IF+++V F IPGSA+ILLLY L+T++
Sbjct: 181 LDTGGRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

Query: 250 FALPSLFIFYLALHALEKLMSDITS 252
           FA+PS  + Y A   L++L+ +ITS
Sbjct: 241 FAIPSFLVLYFAFPMLDRLVREITS 263

[Close]

BLAST of CmoCh12G006640 vs. TrEMBL
Match: A0A0S3T1L8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G048700 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.4e-61
Identity = 134/262 (51.15%), Postives = 169/262 (64.50%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQFSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----ETDAASAR 189
            LLWMVES N +  KL  S +GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSS-SGDTQPIWSPKCNLLGSQVSTCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFAL 249
             G         LHK LD+ +    KF L+VIF++I +F +PGS +IL+LYLL+T+LFA+
Sbjct: 182 HVGASGDTHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAV 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

[Close]

BLAST of CmoCh12G006640 vs. TrEMBL
Match: A0A0L9UTG9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g118800 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.4e-61
Identity = 134/262 (51.15%), Postives = 169/262 (64.50%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQFSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----ETDAASAR 189
            LLWMVES N +  KL  S +GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSS-SGDTQPIWSPKCNLLGSQVSTCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFAL 249
             G         LHK LD+ +    KF L+VIF++I +F +PGS +IL+LYLL+T+LFA+
Sbjct: 182 HVGASGDTHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAV 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

[Close]

BLAST of CmoCh12G006640 vs. TrEMBL
Match: A0A061EAY0_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_011589 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 135/261 (51.72%), Postives = 170/261 (65.13%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNAIA I  K      +    ECSDD EVCS GSR+E LECPICWESFNIVEN+P
Sbjct: 1   MWGFASNAIASIGLKSTKEADRACS-ECSDD-EVCSNGSREEGLECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LC+NC+LGLQ  VLK+ + QI++P+FI CPWCH +SLR+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCILGLQPAVLKLPTQQIKIPLFISCPWCHLISLRLVYKGNLKFPRKNF 120

Query: 130 ILLWMVESFNCNE-GKLEHSFNGDNQPVFSRTSETDAASARLPGIGR------------- 189
            LLWM+ES N +  G    + +G NQPV S        +    G+ R             
Sbjct: 121 FLLWMIESLNGDRYGLGRRTSSGYNQPVGSPRCNLMLGNQATSGVFRRGSYTHRPGQLSS 180

Query: 190 ---------QRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLL 248
                    +R    LHK LD+ +H   KF LV+IF++IV FVIP SA+IL+LYLL+T++
Sbjct: 181 QDNDGRNNVERHHFSLHKSLDFFIHFTSKFPLVIIFLLIVFFVIPASAVILVLYLLVTVV 240

[Close]

BLAST of CmoCh12G006640 vs. TAIR10
Match: AT1G69330.1 (AT1G69330.1 RING/U-box superfamily protein)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-54
Identity = 130/271 (47.97%), Postives = 165/271 (60.89%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEE-LECPICWESFNIVENI 69
           MW  ASN I  +  KK+   S Q   +CSDD+   S  SRDEE LECPICWESFNIVEN+
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDE--VSNISRDEEGLECPICWESFNIVENV 60

Query: 70  PYVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKN 129
           PYVLWCGH+LC+NCV GLQ  VL+++S  IR+P F+ CPWC  LS R+VYKGNLKFP KN
Sbjct: 61  PYVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKN 120

Query: 130 FILLWMVESFN----CNEGKLEH-SFNGDNQ-----PVFSRTSETDAASARL---PGIGR 189
           F LLWMVES N     +  +  H S   DNQ     P  S +    +++  L   P +  
Sbjct: 121 FFLLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLGNHSSNNNLVARPLLRN 180

Query: 190 Q---------------RWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLY 249
           Q               R     HK LD+ +    KF  V+IF++IV F IPGS +IL LY
Sbjct: 181 QSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILALY 240

Query: 250 LLITLLFALPSLFIFYLALHALEKLMSDITS 252
            L+T+LFA+P+  + Y A   LE+L+++ITS
Sbjct: 241 FLLTILFAVPAGLVLYFAYPILERLVNEITS 269

[Close]

BLAST of CmoCh12G006640 vs. TAIR10
Match: AT3G29270.1 (AT3G29270.1 RING/U-box superfamily protein)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-51
Identity = 114/257 (44.36%), Postives = 161/257 (62.65%), Query Frame = 1


Query: 9   KMWKMASNAIAGIRSKKNSAVSK-QVFWECSDDDEVCSEGSRDEELECPICWESFNIVEN 68
           +MW +AS+ + G    KN          ECSDDD V S GS+DE LECPICWESFNIVEN
Sbjct: 8   RMWNLASSYLTGNIGPKNDIRRPVHAHAECSDDD-VSSVGSKDEGLECPICWESFNIVEN 67

Query: 69  IPYVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNK 128
           +PYVLWCGH++CKNC+LGLQ  ++K+ +  +++P+FI CPWC+ LS R+V++G L+FP+K
Sbjct: 68  VPYVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHK 127

Query: 129 NFILLWMVESFN----------CNEGKLEHSFNGDNQPVFSRTSETDAASARLPG---IG 188
           N+ +LWMVE  N            +G  +H+    +  + +R   +    +R      I 
Sbjct: 128 NYFVLWMVERMNGERRNSPGGAQTDGNNDHTRETPSPCLHNRHHRSQPEPSRSVNDHRIP 187

Query: 189 RQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFALPSLFI 248
           R   +  L K L + V L  KF LVVIF++I+++ IP SA IL +Y+L+TLL ALPS  I
Sbjct: 188 RDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPSFLI 247

Query: 249 FYLALHALEKLMSDITS 252
            Y A   L+ L+ +I +
Sbjct: 248 LYFAYPCLDWLVREIVT 263

[Close]

BLAST of CmoCh12G006640 vs. TAIR10
Match: AT1G74370.1 (AT1G74370.1 RING/U-box superfamily protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 104/268 (38.81%), Postives = 153/268 (57.09%), Query Frame = 1


Query: 10  MWKMASNAIA-GIRSKKNSAVSK--QVFWECSDDDEVCSEGSRDEELECPICWESFNIVE 69
           MW +AS +I  G  SK   A +K  +   + S D     + +++E+LECPICWESFN+VE
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGR---KTTKEEKLECPICWESFNVVE 60

Query: 70  NIPYVLWCGHSLCKNCVLGLQ-GCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFP 129
           N+PYVLWCGH++CK C+LGLQ   V+K ++   ++P F+ CPWC+ LSLR+V  G ++FP
Sbjct: 61  NVPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFP 120

Query: 130 NKNFILLWMVESFNCNEGKLEHSFNGDNQPVFS----RTSETDAASARLPG----IGRQR 189
           +KNF LLWMVES N +  +       DN+ V S      +  D  S    G    +  + 
Sbjct: 121 SKNFYLLWMVESMNGSRSEAP----SDNKRVASGQRDLRNRCDGVSNTALGDEGLLDNRS 180

Query: 190 W------------RLF--LHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLI 249
           W            RL   + K +    HL+ KF LVVIF+++ ++ IP SA +L +Y  +
Sbjct: 181 WWNGVTRGFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFV 240

Query: 250 TLLFALPSLFIFYLALHALEKLMSDITS 252
           T   A+PS  + Y A  +L  L+ +I +
Sbjct: 241 TFALAVPSFLVLYFAFPSLNWLIREIAT 261

[Close]

BLAST of CmoCh12G006640 vs. NCBI nr
Match: gi|778703011|ref|XP_011655300.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 3.8e-99
Identity = 193/242 (79.75%), Postives = 210/242 (86.78%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MWK+ASNAIAGIRSKKNS VSKQVFWECSDD E CSE SRDEELECPICWESFNIVEN+P
Sbjct: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDD-EACSEASRDEELECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVL CGHSLCKNCVLGLQG VLK+A+ QIR+PI I CPWCHQLSLRVVYKGNLKFP+KNF
Sbjct: 61  YVLXCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSETDAASARLPGIGRQRWRLFLHKHLDYA 189
            LLWMVESFN NEGKL+HSFN DN P+FS  S T   +     +  +R RLF + HLD+ 
Sbjct: 121 FLLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGT-----VTSERRRLFFYNHLDFV 180

Query: 190 VHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFALPSLFIFYLALHALEKLMSDI 249
           VHLIFKFLL+VIFV+IV+FVIPGSALILLLYLLITLLFALPSL IFYLA HALEKLM+DI
Sbjct: 181 VHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDI 236

Query: 250 TS 252
           TS
Sbjct: 241 TS 236

[Close]

BLAST of CmoCh12G006640 vs. NCBI nr
Match: gi|659131481|ref|XP_008465708.1| (PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 1.1e-98
Identity = 192/242 (79.34%), Postives = 209/242 (86.36%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MWK+ASNAIAGIRSKKNS V KQVFWECSDD EVCSE SRDEELECPICWESFNIVEN+P
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDD-EVCSEASRDEELECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGHSLCKNCVLGLQG VLK+A+ Q+R+PI I CPWCHQLSLRVVYKGNLKFP+KNF
Sbjct: 61  YVLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSETDAASARLPGIGRQRWRLFLHKHLDYA 189
            LLWMVESFN NEGKL+HSFN DNQ VFS  S T         +  +R RLF + HLD  
Sbjct: 121 FLLWMVESFNGNEGKLDHSFNSDNQSVFSLPSGT---------VTSERRRLFFYNHLDCV 180

Query: 190 VHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFALPSLFIFYLALHALEKLMSDI 249
           +HL+FKFLL VIFV+IV+FVIPGSALILLLYLLITLLFALPSL IFYLALHAL+KLM+DI
Sbjct: 181 IHLVFKFLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDI 232

Query: 250 TS 252
           TS
Sbjct: 241 TS 232

[Close]

BLAST of CmoCh12G006640 vs. NCBI nr
Match: gi|593788762|ref|XP_007157420.1| (hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris])

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 137/262 (52.29%), Postives = 173/262 (66.03%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  IR+K+++    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LCKNCVLGLQ  VL   + QIR+P FI CPWCH LS R++YKGNLK+P KNF
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----ETDAASAR 189
            LLWMVES N    KL  S  GD QP++S                R S         S R
Sbjct: 121 FLLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNR 180

Query: 190 LPGIGRQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFAL 249
             G+  +     LHK LD+ +H   KF L+VIF++I +F +PGSA+IL+LYLL+T++FA+
Sbjct: 181 DVGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAI 240

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 241 PSFLVLYFAYPTIQRLIREITS 260

[Close]

BLAST of CmoCh12G006640 vs. NCBI nr
Match: gi|823157700|ref|XP_012478732.1| (PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii])

HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63
Identity = 136/265 (51.32%), Postives = 175/265 (66.04%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASN IA I   K+S  + Q   ECSDD E+CS GSRDE LECPICWE FNIVEN+P
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDD-ELCSNGSRDEGLECPICWEPFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LC+NC+LGLQ  VLK+ + QI++P+FI CPWCH +SLR+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNF 120

Query: 130 ILLWMVESFNCNE-GKLEHSFNGDNQPVFSRTSETDAASARLPGIGR------------- 189
            +LWM+ES N +  G    + +GDNQPV S        +  + G+ R             
Sbjct: 121 FILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRS 180

Query: 190 ---------QRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLL 249
                    +R    LHK LD+ +H   KF LV+IF+++V F IPGSA+ILLLY L+T++
Sbjct: 181 LDTGGRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

Query: 250 FALPSLFIFYLALHALEKLMSDITS 252
           FA+PS  + Y A   L++L+ +ITS
Sbjct: 241 FAIPSFLVLYFAFPMLDRLVREITS 263

[Close]

BLAST of CmoCh12G006640 vs. NCBI nr
Match: gi|920702657|gb|KOM45882.1| (hypothetical protein LR48_Vigan06g118800 [Vigna angularis])

HSP 1 Score: 242.3 bits (617), Expect = 9.2e-61
Identity = 134/262 (51.15%), Postives = 169/262 (64.50%), Query Frame = 1


Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQFSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPNKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----ETDAASAR 189
            LLWMVES N +  KL  S +GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSS-SGDTQPIWSPKCNLLGSQVSTCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWRLFLHKHLDYAVHLIFKFLLVVIFVVIVIFVIPGSALILLLYLLITLLFAL 249
             G         LHK LD+ +    KF L+VIF++I +F +PGS +IL+LYLL+T+LFA+
Sbjct: 182 HVGASGDTHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAV 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

The following BLAST results are available for this feature:

BLAST of CmoCh12G006640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006640 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CH03_PHAVU	1.1e-63	52.29	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1	[more]
A0A0D2RKN8_GOSRA	1.8e-63	51.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1	[more]
A0A0S3T1L8_PHAAN	6.4e-61	51.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G048700 PE=...	[more]
A0A0L9UTG9_PHAAN	6.4e-61	51.15	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g118800 PE=4 SV=1	[more]
A0A061EAY0_THECC	1.4e-60	51.72	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_011589 PE=4 SV=1	[more]

BLAST of CmoCh12G006640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69330.1	1.4e-54	47.97	RING/U-box superfamily protein	[more]
AT3G29270.1	4.1e-51	44.36	RING/U-box superfamily protein	[more]
AT1G74370.1	1.4e-38	38.81	RING/U-box superfamily protein	[more]

BLAST of CmoCh12G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703011\|ref\|XP_011655300.1\|	3.8e-99	79.75	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sa...	[more]
gi\|659131481\|ref\|XP_008465708.1\|	1.1e-98	79.34	PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo]	[more]
gi\|593788762\|ref\|XP_007157420.1\|	1.5e-63	52.29	hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris]	[more]
gi\|823157700\|ref\|XP_012478732.1\|	2.6e-63	51.32	PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii]	[more]
gi\|920702657\|gb\|KOM45882.1\|	9.2e-61	51.15	hypothetical protein LR48_Vigan06g118800 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006640.1	CmoCh12G006640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 55..110 score: 9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 50..111 score: 6.
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 74..83 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 55..83 score: 5.
None	No IPR available	PANTHER	PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 26..251 score: 3.8
None	No IPR available	PANTHER	PTHR13139:SF47	SUBFAMILY NOT NAMED	coord: 26..251 score: 3.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 50..112 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G006640	Cucsa.275280	Cucumber (Gy14) v1	cgycmoB0761
CmoCh12G006640	CmaCh12G007650	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G006640	CmaCh05G009160	Cucurbita maxima (Rimu)	cmacmoB771
CmoCh12G006640	Cla005547	Watermelon (97103) v1	cmowmB133
CmoCh12G006640	Csa5G484680	Cucumber (Chinese Long) v2	cmocuB172
CmoCh12G006640	MELO3C002929	Melon (DHL92) v3.5.1	cmomeB135
CmoCh12G006640	ClCG09G022190	Watermelon (Charleston Gray)	cmowcgB127
CmoCh12G006640	CSPI05G16470	Wild cucumber (PI 183967)	cmocpiB175
CmoCh12G006640	Cp4.1LG11g07510	Cucurbita pepo (Zucchini)	cmocpeB155
CmoCh12G006640	Cp4.1LG07g05400	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G006640	MELO3C002929.2	Melon (DHL92) v3.6.1	cmomedB148
CmoCh12G006640	CsaV3_5G025490	Cucumber (Chinese Long) v3	cmocucB0205
CmoCh12G006640	Cla97C09G183640	Watermelon (97103) v2	cmowmbB189
CmoCh12G006640	Bhi06G000669	Wax gourd	cmowgoB0173
CmoCh12G006640	CsGy5G016170	Cucumber (Gy14) v2	cgybcmoB562

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G006640	CmoCh05G009330	Cucurbita moschata (Rifu)	cmocmoB157

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G006640	Bottle gourd (USVL1VR-Ls)	cmolsiB156
CmoCh12G006640	Cucurbita moschata (Rifu)	cmocmoB155
CmoCh12G006640	Cucurbita maxima (Rimu)	cmacmoB178