CSPI05G16470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G16470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING/U-box superfamily protein
Location	Chr5 : 17771453 .. 17773511 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTAGTTATTTTCAAATTAAAACTTCACAAAAAGAAAAAAGGAAAATAAAAAAATAAGTATTGGAAACCTTCTTCATCCTCTCTCCTTCAAAACTCAATCGGCATCCTTGGCGTTGGTTTGGCGGAGAGAAAATGATGGGGGAAGATCGCGGCCTTCCTTCTCATTGTTTTTCTCATCTTCTTTTCTTTTTCTGAATCCTTCCCATATTCATCCAAAGGCATGCTCATCCACTTTCTCTAGAGGTAAATTCGTATTTTACATTTTCCATTCTTCATCTTTGATTTTGATTTTGATTTTCTTTCATATTTAGTTCTATTTTCATTGGGTTTCCTTCCTTTCAGTTTCTGTTCACACGTTCCGTTGGAATGTTGGGGGCGATTGATTTTGTTGTTGTTGATAATTTTGTGAATTATTCATATCCAAACTCTGATCGAAGTTTAGCTTTCGAATATGCATCTTGGAGCAAGTGTATTGCCTCGGCACCAAATTTCATTCTTTTTCTCTATTCTGGAATATGATGTTTATATATATCTGTTACAATGTTTGTCAACATTGTTCGCTTTTGATTATTTTGTGACACTGGGTAAATTGTTTTTCTGCTTTTTTTTTTCCTTTTGTTCTTTTGTGTTTTATTTATTTTTGGCAGTAATCTACTTATGGATTGTATATTCAAAATTGTTGAATTGGCAGTAGTCATCTGATGCCAGCAGAGAAGTTTTGTTGTGATTCTATTGTTTGTTCATAGTGTTGAAACCTTTGGAAGAAAAATGTCCTTATTTCTCGAAAATTTTCCATTCAAGTGATGCTTTGGTATGGTTTAATTAGATTTGGTTTTTAGTTTCTGAAAATTAAGCCTATATAAGATCTTCTTTTACCTTTTAACTATTGTTCTTTGTTGTCTAACATTCTTAAAATTCAAGTCAAAATTTGAAAATTAAAAAAATATTTATAAACTTGTTTGTTTTTTTAACTTTGGGTAAGACTTTAAATTGTGGTAAGAAAATGAGAGGAAATAAGCTTCATTTTCAAAAACTAAAAACTAAAAACCAAATTTTGGTAACTAATTTGTCTTTTAGTACAAACCATTCCATCAATTTCTATTCTCTAGAAAGGTACCATAGTTTTTAAAATATCGTCTTTAAAGATATTATTACTAAGATGTATAATATTCTTTGATTGGATCTCTAATAATTTGGAAGAACTGTTTCTTTGTGGGAGGCTTCGTAGTTTTTCTTTCATAGATGAACATCTATTTTGCAGATGTCATGTTGATGGCATATTTAAACAATTCTTCTGTCGTCCCTTTTGGAACATCCGATAAAATTGAAACAATTCTTCTGTCAGGATGTGGAAGTTGGCATCGAACGCCATTGCTGGCATTCGATCTAAGAAAAACTCAGATGTATCTAAGCAAGTTTTCTGGGAGTGCTCGGATGACGAGGCTTGCTCGGAAGCCAGTAGAGATGAAGAATTGGAGTGCCCTATATGCTGGGAATCTTTTAACATTGTGGAGAATGTACCTTATGTCTTATGGTGTGGCCATTCCTTGTGCAAAAATTGTGTATTAGGCCTTCAAGGGTCTGTGCTGAAACTAGCTACTCGCCAAATCCGAATCCCAATCGTCATTTCGTGCCCTTGGTGTCATCAGCTGTCACTAAGGGTGGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCTTTAATGGCAATGAGGGAAAACTTGACCATTCCTTCAATTCGGATAATCACCCACTTTTTTCTTTGCCATCGGGTACCGGTACCGGTACCGTTACTTCTGAGAGGCGGCGATTGTTTTTCTATAATCATTTGGATTGCGTTGTCCATTTAATCTTCAAGTTTCTACTTCTTGTCATATTTGTTCTGATAGTTGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTATCTGCTAATCACTTTACTTTTTGCATTGCCATCTTTGCTGATATTTTACCTTGCATTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

mRNA sequence

ATGTGGAAGTTGGCATCGAACGCCATTGCTGGCATTCGATCTAAGAAAAACTCAGATGTATCTAAGCAAGTTTTCTGGGAGTGCTCGGATGACGAGGCTTGCTCGGAAGCCAGTAGAGATGAAGAATTGGAGTGCCCTATATGCTGGGAATCTTTTAACATTGTGGAGAATGTACCTTATGTCTTATGGTGTGGCCATTCCTTGTGCAAAAATTGTGTATTAGGCCTTCAAGGGTCTGTGCTGAAACTAGCTACTCGCCAAATCCGAATCCCAATCGTCATTTCGTGCCCTTGGTGTCATCAGCTGTCACTAAGGGTGGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCTTTAATGGCAATGAGGGAAAACTTGACCATTCCTTCAATTCGGATAATCACCCACTTTTTTCTTTGCCATCGGGTACCGGTACCGGTACCGTTACTTCTGAGAGGCGGCGATTGTTTTTCTATAATCATTTGGATTGCGTTGTCCATTTAATCTTCAAGTTTCTACTTCTTGTCATATTTGTTCTGATAGTTGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTATCTGCTAATCACTTTACTTTTTGCATTGCCATCTTTGCTGATATTTTACCTTGCATTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

Coding sequence (CDS)

ATGTGGAAGTTGGCATCGAACGCCATTGCTGGCATTCGATCTAAGAAAAACTCAGATGTATCTAAGCAAGTTTTCTGGGAGTGCTCGGATGACGAGGCTTGCTCGGAAGCCAGTAGAGATGAAGAATTGGAGTGCCCTATATGCTGGGAATCTTTTAACATTGTGGAGAATGTACCTTATGTCTTATGGTGTGGCCATTCCTTGTGCAAAAATTGTGTATTAGGCCTTCAAGGGTCTGTGCTGAAACTAGCTACTCGCCAAATCCGAATCCCAATCGTCATTTCGTGCCCTTGGTGTCATCAGCTGTCACTAAGGGTGGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCTTTAATGGCAATGAGGGAAAACTTGACCATTCCTTCAATTCGGATAATCACCCACTTTTTTCTTTGCCATCGGGTACCGGTACCGGTACCGTTACTTCTGAGAGGCGGCGATTGTTTTTCTATAATCATTTGGATTGCGTTGTCCATTTAATCTTCAAGTTTCTACTTCTTGTCATATTTGTTCTGATAGTTGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTATCTGCTAATCACTTTACTTTTTGCATTGCCATCTTTGCTGATATTTTACCTTGCATTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

Homology

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BLAST of CSPI05G16470 vs. TrEMBL
Match: V7CH03_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.1e-65
Identity = 137/261 (52.49%), Postives = 173/261 (66.28%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASNA+  IR+K+++    +   ECSDDE CS +SRDE LECPICWESFNIVENVPY
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDDEVCSNSSRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +VL   T+QIRIP  ISCPWCH LS R++YKGNLK+P KNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------LPSGTGTGT--- 180
           LLWMVES NG   KL  S   D  P++S                     P     G+   
Sbjct: 121 LLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNRD 180

Query: 181 --VTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALP 237
             V+ E      +  LD  +H   KF L+VIF+LI +F +PGSA+IL+LYLL+T++FA+P
Sbjct: 181 VGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAIP 240

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BLAST of CSPI05G16470 vs. TrEMBL
Match: A0A151TFE0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012038 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 9.1e-65
Identity = 140/262 (53.44%), Postives = 173/262 (66.03%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW+ ASNA+  IR K++S        +CSDDE CS ASRDE LECPICWESFNIVENVPY
Sbjct: 1   MWRFASNALTCIRKKRSSKEPSHDNADCSDDEVCSNASRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +V+K  T+QI+IP  ISCPWCH LSLR +YKGNLK+P KNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQWAVVKFPTQQIKIPFFISCPWCHLLSLRFIYKGNLKYPCKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------------LPSGTG 180
           LLWMVES NG+  KL  S  ++N P++S                          L S   
Sbjct: 121 LLWMVESLNGDRHKL-VSTCAENQPIWSPKCNLLGSQVTNCNLRRASISHCSGQLGSNRD 180

Query: 181 TGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFAL 237
            G    E R       LD   HL  KF L++IF+LI +F IP SA+IL+LYLL+T+LFA+
Sbjct: 181 VGVSDGETRYFNLLKSLDFFFHLTAKFPLVIIFLLIALFAIPCSAVILVLYLLVTILFAI 240

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BLAST of CSPI05G16470 vs. TrEMBL
Match: A0A0D2RKN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 142/265 (53.58%), Postives = 176/265 (66.42%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASN IA I   K+S  + Q   ECSDDE CS  SRDE LECPICWE FNIVENVPY
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDDELCSNGSRDEGLECPICWEPFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NC+LGLQ +VLKL T+QI+IP+ ISCPWCH +SLR+VYKGNLKFP KNFF
Sbjct: 61  VLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNFF 120

Query: 121 LLWMVESFNGNE-GKLDHSFNSDNHPLFSLP----------SG----------------- 180
           +LWM+ES NG+  G    + + DN P+ SL           SG                 
Sbjct: 121 ILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRSL 180

Query: 181 -TGTGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLL 237
            TG G   +ER     +  LD  +H   KF L++IF+L+V F IPGSA+ILLLY L+T++
Sbjct: 181 DTG-GRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

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BLAST of CSPI05G16470 vs. TrEMBL
Match: A0A0B2P2S1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031123 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.7e-64
Identity = 138/262 (52.67%), Postives = 169/262 (64.50%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASNA+  IR K  S    Q   ECSDDE CS ASRDE LECPICWESFNIVENVPY
Sbjct: 2   MWSFASNALTSIRLKIGSKQPSQTSAECSDDEVCSNASRDEGLECPICWESFNIVENVPY 61

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +V+K  T+QI+IP  ISCPWCH LS R++ KGNLK+P KNFF
Sbjct: 62  VLWCGHTLCKNCVLGLQWAVVKFPTQQIKIPFFISCPWCHLLSFRIICKGNLKYPCKNFF 121

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------------LPSGTG 180
           LLWMVES NG+  KL  S  +DN P++S                          L S   
Sbjct: 122 LLWMVESLNGDRNKL-VSTCTDNQPIWSPKCNLLGSQVTNCNLRRASVSPCSRLLGSNHD 181

Query: 181 TGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFAL 237
            G    E      +  LD  +H   KF L+VIF+LI +F+IP  A+IL+LY L+T+LFA+
Sbjct: 182 VGVNDGETHHFSLHKSLDFFLHFTSKFPLVVIFLLIALFLIPCCAVILVLYFLVTILFAI 241

[Close]

BLAST of CSPI05G16470 vs. TrEMBL
Match: I1J5X8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G055900 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.7e-64
Identity = 138/262 (52.67%), Postives = 169/262 (64.50%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASNA+  IR K  S    Q   ECSDDE CS ASRDE LECPICWESFNIVENVPY
Sbjct: 2   MWSFASNALTSIRLKIGSKQPSQTSAECSDDEVCSNASRDEGLECPICWESFNIVENVPY 61

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +V+K  T+QI+IP  ISCPWCH LS R++ KGNLK+P KNFF
Sbjct: 62  VLWCGHTLCKNCVLGLQWAVVKFPTQQIKIPFFISCPWCHLLSFRIICKGNLKYPCKNFF 121

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------------LPSGTG 180
           LLWMVES NG+  KL  S  +DN P++S                          L S   
Sbjct: 122 LLWMVESLNGDRNKL-VSTCTDNQPIWSPKCNLLGSQVTNCNLRRASVSPCSRLLGSNHD 181

Query: 181 TGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFAL 237
            G    E      +  LD  +H   KF L+VIF+LI +F+IP  A+IL+LY L+T+LFA+
Sbjct: 182 VGVNDGETHHFSLHKSLDFFLHFTSKFPLVVIFLLIALFLIPCCAVILVLYFLVTILFAI 241

[Close]

BLAST of CSPI05G16470 vs. TAIR10
Match: AT1G69330.1 (AT1G69330.1 RING/U-box superfamily protein)

HSP 1 Score: 224.2 bits (570), Expect = 8.7e-59
Identity = 134/270 (49.63%), Postives = 167/270 (61.85%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEE-LECPICWESFNIVENVP 60
           MW  ASN I  +  KK+   S Q   +CSDDE  S  SRDEE LECPICWESFNIVENVP
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDEV-SNISRDEEGLECPICWESFNIVENVP 60

Query: 61  YVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGH+LC+NCV GLQ +VL+L+++ IRIP  +SCPWC  LS R+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 120

Query: 121 FLLWMVESFNGNE----GKLDHSF--------------------NSDNHPLFSLPSGTGT 180
           FLLWMVES NG+      +  H                      +S N+ L + P     
Sbjct: 121 FLLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLGNHSSNNNLVARPLLRNQ 180

Query: 181 GT--------VTSERRRLF-FYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYL 237
            T             R+LF F+  LD  +    KF  ++IF+LIV F IPGS +IL LY 
Sbjct: 181 STDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILALYF 240

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BLAST of CSPI05G16470 vs. TAIR10
Match: AT3G29270.1 (AT3G29270.1 RING/U-box superfamily protein)

HSP 1 Score: 207.6 bits (527), Expect = 8.4e-54
Identity = 122/262 (46.56%), Postives = 166/262 (63.36%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFW--ECSDDEACSEASRDEELECPICWESFNIVENV 60
           MW LAS+ + G    KN D+ + V    ECSDD+  S  S+DE LECPICWESFNIVENV
Sbjct: 9   MWNLASSYLTGNIGPKN-DIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENV 68

Query: 61  PYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKN 120
           PYVLWCGH++CKNC+LGLQ +++KL T  +++P+ ISCPWC+ LS R+V++G L+FP KN
Sbjct: 69  PYVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKN 128

Query: 121 FFLLWMVESFNG----------NEGKLDHS-------FNSDNHPLFSLPSGT-------G 180
           +F+LWMVE  NG           +G  DH+        ++ +H     PS +        
Sbjct: 129 YFVLWMVERMNGERRNSPGGAQTDGNNDHTRETPSPCLHNRHHRSQPEPSRSVNDHRIPR 188

Query: 181 TGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFAL 237
               TS R+ L F+      V L  KF L+VIF+LI+++ IP SA IL +Y+L+TLL AL
Sbjct: 189 DNIQTSLRKSLVFF------VQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLAL 248

[Close]

BLAST of CSPI05G16470 vs. TAIR10
Match: AT1G74370.1 (AT1G74370.1 RING/U-box superfamily protein)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 103/261 (39.46%), Postives = 147/261 (56.32%), Query Frame = 1


Query: 1   MWKLASNAIA-GIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVP 60
           MW LAS +I  G  SK     +K             + +++E+LECPICWESFN+VENVP
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGRKTTKEEKLECPICWESFNVVENVP 60

Query: 61  YVLWCGHSLCKNCVLGLQGS-VLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKN 120
           YVLWCGH++CK C+LGLQ + V+K +    ++P  ++CPWC+ LSLR+V  G ++FPSKN
Sbjct: 61  YVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPSKN 120

Query: 121 FFLLWMVESFNGN------------EGKLDHSFNSDNHPLFSLP-----------SGTGT 180
           F+LLWMVES NG+             G+ D     D     +L            +G   
Sbjct: 121 FYLLWMVESMNGSRSEAPSDNKRVASGQRDLRNRCDGVSNTALGDEGLLDNRSWWNGVTR 180

Query: 181 GTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALP 237
           G   + R        +  V HL+ KF L+VIF+L+ ++ IP SA +L +Y  +T   A+P
Sbjct: 181 GFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFVTFALAVP 240

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BLAST of CSPI05G16470 vs. NCBI nr
Match: gi|778703011|ref|XP_011655300.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sativus])

HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125
Identity = 234/236 (99.15%), Postives = 234/236 (99.15%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VL CGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLXCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDCVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLD VVHLIFK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 237
           FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS
Sbjct: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236

[Close]

BLAST of CSPI05G16470 vs. NCBI nr
Match: gi|659131481|ref|XP_008465708.1| (PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo])

HSP 1 Score: 432.6 bits (1111), Expect = 4.5e-118
Identity = 221/236 (93.64%), Postives = 226/236 (95.76%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDV KQVFWECSDDE CSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQ+RIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDCVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDN  +FSLPS    GTVTSERRRLFFYNHLDCV+HL+FK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLPS----GTVTSERRRLFFYNHLDCVIHLVFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 237
           FLL VIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLA HAL+KLMNDITS
Sbjct: 181 FLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDITS 232

[Close]

BLAST of CSPI05G16470 vs. NCBI nr
Match: gi|593788762|ref|XP_007157420.1| (hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris])

HSP 1 Score: 256.1 bits (653), Expect = 5.8e-65
Identity = 137/261 (52.49%), Postives = 173/261 (66.28%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASNA+  IR+K+++    +   ECSDDE CS +SRDE LECPICWESFNIVENVPY
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDDEVCSNSSRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +VL   T+QIRIP  ISCPWCH LS R++YKGNLK+P KNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------LPSGTGTGT--- 180
           LLWMVES NG   KL  S   D  P++S                     P     G+   
Sbjct: 121 LLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNRD 180

Query: 181 --VTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALP 237
             V+ E      +  LD  +H   KF L+VIF+LI +F +PGSA+IL+LYLL+T++FA+P
Sbjct: 181 VGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAIP 240

[Close]

BLAST of CSPI05G16470 vs. NCBI nr
Match: gi|1012354587|gb|KYP65774.1| (hypothetical protein KK1_012038 [Cajanus cajan])

HSP 1 Score: 255.0 bits (650), Expect = 1.3e-64
Identity = 140/262 (53.44%), Postives = 173/262 (66.03%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW+ ASNA+  IR K++S        +CSDDE CS ASRDE LECPICWESFNIVENVPY
Sbjct: 1   MWRFASNALTCIRKKRSSKEPSHDNADCSDDEVCSNASRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQ +V+K  T+QI+IP  ISCPWCH LSLR +YKGNLK+P KNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQWAVVKFPTQQIKIPFFISCPWCHLLSLRFIYKGNLKYPCKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFS--------------------------LPSGTG 180
           LLWMVES NG+  KL  S  ++N P++S                          L S   
Sbjct: 121 LLWMVESLNGDRHKL-VSTCAENQPIWSPKCNLLGSQVTNCNLRRASISHCSGQLGSNRD 180

Query: 181 TGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFAL 237
            G    E R       LD   HL  KF L++IF+LI +F IP SA+IL+LYLL+T+LFA+
Sbjct: 181 VGVSDGETRYFNLLKSLDFFFHLTAKFPLVIIFLLIALFAIPCSAVILVLYLLVTILFAI 240

[Close]

BLAST of CSPI05G16470 vs. NCBI nr
Match: gi|823157700|ref|XP_012478732.1| (PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii])

HSP 1 Score: 253.4 bits (646), Expect = 3.8e-64
Identity = 142/265 (53.58%), Postives = 176/265 (66.42%), Query Frame = 1


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MW  ASN IA I   K+S  + Q   ECSDDE CS  SRDE LECPICWE FNIVENVPY
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDDELCSNGSRDEGLECPICWEPFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NC+LGLQ +VLKL T+QI+IP+ ISCPWCH +SLR+VYKGNLKFP KNFF
Sbjct: 61  VLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNFF 120

Query: 121 LLWMVESFNGNE-GKLDHSFNSDNHPLFSLP----------SG----------------- 180
           +LWM+ES NG+  G    + + DN P+ SL           SG                 
Sbjct: 121 ILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRSL 180

Query: 181 -TGTGTVTSERRRLFFYNHLDCVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLL 237
            TG G   +ER     +  LD  +H   KF L++IF+L+V F IPGSA+ILLLY L+T++
Sbjct: 181 DTG-GRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

The following BLAST results are available for this feature:

BLAST of CSPI05G16470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G16470 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CH03_PHAVU	4.1e-65	52.49	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1	[more]
A0A151TFE0_CAJCA	9.1e-65	53.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_012038 PE=4 SV=1	[more]
A0A0D2RKN8_GOSRA	2.6e-64	53.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1	[more]
A0A0B2P2S1_GLYSO	7.7e-64	52.67	Uncharacterized protein OS=Glycine soja GN=glysoja_031123 PE=4 SV=1	[more]
I1J5X8_SOYBN	7.7e-64	52.67	Uncharacterized protein OS=Glycine max GN=GLYMA_01G055900 PE=4 SV=1	[more]

BLAST of CSPI05G16470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69330.1	8.7e-59	49.63	RING/U-box superfamily protein	[more]
AT3G29270.1	8.4e-54	46.56	RING/U-box superfamily protein	[more]
AT1G74370.1	1.8e-40	39.46	RING/U-box superfamily protein	[more]

BLAST of CSPI05G16470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703011\|ref\|XP_011655300.1\|	3.8e-125	99.15	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sa...	[more]
gi\|659131481\|ref\|XP_008465708.1\|	4.5e-118	93.64	PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo]	[more]
gi\|593788762\|ref\|XP_007157420.1\|	5.8e-65	52.49	hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris]	[more]
gi\|1012354587\|gb\|KYP65774.1\|	1.3e-64	53.44	hypothetical protein KK1_012038 [Cajanus cajan]	[more]
gi\|823157700\|ref\|XP_012478732.1\|	3.8e-64	53.58	PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G16470.1	CSPI05G16470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 45..100 score: 9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 40..101 score: 1.0
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..85 score: 5.
None	No IPR available	PANTHER	PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 17..236 score: 3.0
None	No IPR available	PANTHER	PTHR13139:SF47	SUBFAMILY NOT NAMED	coord: 17..236 score: 3.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 40..102 score: 3.11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G16470	Cla005547	Watermelon (97103) v1	cpiwmB368
CSPI05G16470	Csa5G484680	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G16470	MELO3C002929	Melon (DHL92) v3.5.1	cpimeB350
CSPI05G16470	ClCG09G022190	Watermelon (Charleston Gray)	cpiwcgB354
CSPI05G16470	Lsi02G017420	Bottle gourd (USVL1VR-Ls)	cpilsiB351
CSPI05G16470	MELO3C002929.2	Melon (DHL92) v3.6.1	cpimedB340
CSPI05G16470	CsaV3_5G025490	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G16470	Cla97C09G183640	Watermelon (97103) v2	cpiwmbB427
CSPI05G16470	Bhi06G000669	Wax gourd	cpiwgoB475
CSPI05G16470	Cucsa.275280	Cucumber (Gy14) v1	cgycpiB415
CSPI05G16470	CmaCh05G009160	Cucurbita maxima (Rimu)	cmacpiB813
CSPI05G16470	CmoCh05G009330	Cucurbita moschata (Rifu)	cmocpiB798
CSPI05G16470	CmoCh12G006640	Cucurbita moschata (Rifu)	cmocpiB175
CSPI05G16470	Cp4.1LG11g07510	Cucurbita pepo (Zucchini)	cpecpiB115
CSPI05G16470	Cp4.1LG07g05400	Cucurbita pepo (Zucchini)	cpecpiB836
CSPI05G16470	CsGy5G016170	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G16470	Carg26440	Silver-seed gourd	carcpiB1100

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G16470	Watermelon (97103) v2	cpiwmbB430
CSPI05G16470	Cucurbita maxima (Rimu)	cmacpiB192
CSPI05G16470	Cucurbita maxima (Rimu)	cmacpiB763
CSPI05G16470	Cucurbita pepo (Zucchini)	cpecpiB445