CmaCh12G007650 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G007650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr12 : 4787114 .. 4789180 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAAACCTTCTTCATCCGCTCTCCTCCAAAACGCAATCGGCTTCCTCGACTTTGGTCCGGCGGAGGGAAAATGAAGAGGGGAGATCGCGACCTTCCTCCCAAATCCGTTTCTTGATCCTCTTTTGTTTTTCTGAATCCTTCTCAATGCATGTTCATCCAGTTTCTCTAGAGGTAAATCCGCATTCGCTATATTCCACTCTTCATCTTTGATTTTGATGTTTCGTTCGGTTCTGTTTACGAATTTTATGATTTATATTTGTGTTATCTCGTCGATTTGTGAGAGTGATTTCATTTCTCCGTTGCATTTTGTTGTTGTTAGTAATTTTGTGAATTTTCTCTGTCGAATCTTTGATCGACGATTGACTTCTGTTTTGCATCCTGGAACAAATGCATTGGCTCCGCTGCAATTTTAGACTTGATATGTTTAACAGGCTTGACTGTAGATTTTTGTCCGGCATTTTGTTTTCTTCTGTAGAATGTGGAAAATTGTTGATTGGAAGCAGCTGTCTGATCCATAATTATCTCATGTGTGCATGCATATAAGTGTTTGTGTGATTTTATTGTTTGTTTGTTTGATTTTTCAAAGGAGTGTGCCAGTTAAATTATTTTGAAAAGTATGTGAGTTTTCATGAGTAGCGCCTAACAGATAATTTCGACCTATTCATTAAAGAGTGAATAATGTTGAAATCTTTGGAAGAAATGTGTACTTATTTATCAAAAAATTTCGATTCAAATGATGAATTTATACCATTTGATTTGTTTATTTTTATTGTTTTGAGTTTGGATATGTGGGAGATGGTTTAAATCTTTTTGCGTTTTAGTAAAACCATCTGTTTGAATCGTCAATTTTACTTCAGAGGTACCAAAATTTTCAAAATCTGTAAAGATATTATTAAGATCTACAACCAACAAGTAGCTCTTTTGTTGCATCTGTCATTTAGAACTGTGTTGTTTGGGATTGAGGAGTTTAGTTTCTTGGAGTGAATATTGGGAAAAGGAAACTCTGTAAGACTTGTTTCAAGTAGTTTTTGTTTCATACATGAACATCAATTCCAGATGTCATGTTCTTGAAACAATTTTTCTGTCAGGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGACGAGGTATGTTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGGTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTTTGTCCTTGGTGTCATCAGCTATCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAATTTCATTCTCCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTCGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCTGATACAGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCAGTTGTTTCTCCATAAACACTTGGATTACGTCGTCCATTTAATCTTCAAGTTTCTACTGGTCGTCATATTTGTTGTGATTGTCATTGTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGAAATGTCTTGTTTAACATCTTTGTCTATTGCTTTTCTTAATTCCTCTGACTTCGAACAACCAACCAATCTGGAGTTCTATTTTGAAGATCTTTGGTTGGTTTGATTGAATGAAGCTTTGGGCCCAACTCATCAATTGTATTACCTAACCTTATACAAGTTGGTCAATGCCTGTTATTGAAGTTTGAGGCTAAATGATAGCAGAGAAAATTTTGGGGTTGTATGAAATATGCATGCTTTTCCATCCACG

mRNA sequence

TTCCAAACCTTCTTCATCCGCTCTCCTCCAAAACGCAATCGGCTTCCTCGACTTTGGTCCGGCGGAGGGAAAATGAAGAGGGGAGATCGCGACCTTCCTCCCAAATCCGTTTCTTGATCCTCTTTTGTTTTTCTGAATCCTTCTCAATGCATGTTCATCCAGTTTCTCTAGAGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGACGAGGTATGTTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGGTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTTTGTCCTTGGTGTCATCAGCTATCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAATTTCATTCTCCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTCGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCTGATACAGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCAGTTGTTTCTCCATAAACACTTGGATTACGTCGTCCATTTAATCTTCAAGTTTCTACTGGTCGTCATATTTGTTGTGATTGTCATTGTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGAAATGTCTTGTTTAACATCTTTGTCTATTGCTTTTCTTAATTCCTCTGACTTCGAACAACCAACCAATCTGGAGTTCTATTTTGAAGATCTTTGGTTGGTTTGATTGAATGAAGCTTTGGGCCCAACTCATCAATTGTATTACCTAACCTTATACAAGTTGGTCAATGCCTGTTATTGAAGTTTGAGGCTAAATGATAGCAGAGAAAATTTTGGGGTTGTATGAAATATGCATGCTTTTCCATCCACG

Coding sequence (CDS)

ATGCATGTTCATCCAGTTTCTCTAGAGATGTGGAAGATGGCCTCGAATGCCATTGCTGGCATTCGATCCAAGAAAAACTCAGCTGTTTCGAAGCAAGTTTTCTGGGAGTGCTCGGATGACGACGAGGTATGTTCAGAAGGTAGTAGAGATGAAGAACTGGAATGCCCGATATGCTGGGAATCCTTTAACATTGTGGAGAACATACCTTATGTCTTATGGTGTGGTCATTCACTCTGCAAAAACTGTGTATTAGGCCTTCAAGGGTGTGTGTTGAAAGTAGCATCGTGTCAAATCCGAGTCCCGATCTTCATCTTTTGTCCTTGGTGTCATCAGCTATCGCTAAGGGTCGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAATTTCATTCTCCTTTGGATGGTTGAGAGCTTCAATTGTAATGAGGGAAAACTCGAACATTCCTTCAATGGGGATAATCAACCAGTTTTTTCTCGGACTTCTGATACAGATGCAGCATCTGCGAGGCTACCTGGAATAGGGAGGCAGCGATGGCAGTTGTTTCTCCATAAACACTTGGATTACGTCGTCCATTTAATCTTCAAGTTTCTACTGGTCGTCATATTTGTTGTGATTGTCATTGTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTATACCTGCTAATCACTCTACTGTTTGCATTGCCATCTTTGTTCATATTTTACCTTGCACTCCATGCTCTGGAAAAGCTTATGAGTGATATAACTTCATGA

Protein sequence

MHVHPVSLEMWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIPYVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNFILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSDTDAASARLPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFALPSLFIFYLALHALEKLMSDITS
Homology
[Close]
BLAST of CmaCh12G007650 vs. TrEMBL
Match: V7CH03_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 136/262 (51.91%), Postives = 172/262 (65.65%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  IR+K+++    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNCVLGLQ  VL   + QIR+P FI CPWCH LS R++YKGNLK+P KNF
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----DTDAASAR 189
            LLWMVES N    KL  S  GD QP++S                R S         S R
Sbjct: 121 FLLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNR 180

Query: 190 LPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFAL 249
             G+  +     LHK LD+ +H   KF L+VIF++I +  +PGSA+IL+LYLL+T++FA+
Sbjct: 181 DVGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAI 240

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 241 PSFLVLYFAYPTIQRLIREITS 260

[Close]
BLAST of CmaCh12G007650 vs. TrEMBL
Match: A0A0D2RKN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.0e-62
Identity = 135/265 (50.94%), Postives = 175/265 (66.04%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASN IA I   K+S  + Q   ECSDD E+CS GSRDE LECPICWE FNIVEN+P
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDD-ELCSNGSRDEGLECPICWEPFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LC+NC+LGLQ  VLK+ + QI++P+FI CPWCH +SLR+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNF 120

Query: 130 ILLWMVESFNCNE-GKLEHSFNGDNQPVFSRTSDTDAASARLPGIGR------------- 189
            +LWM+ES N +  G    + +GDNQPV S   +    +  + G+ R             
Sbjct: 121 FILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRS 180

Query: 190 ---------QRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLL 249
                    +R    LHK LD+ +H   KF LV+IF+++V   IPGSA+ILLLY L+T++
Sbjct: 181 LDTGGRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

Query: 250 FALPSLFIFYLALHALEKLMSDITS 252
           FA+PS  + Y A   L++L+ +ITS
Sbjct: 241 FAIPSFLVLYFAFPMLDRLVREITS 263

[Close]
BLAST of CmaCh12G007650 vs. TrEMBL
Match: A0A0L9UTG9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g118800 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 133/262 (50.76%), Postives = 168/262 (64.12%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQFSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----DTDAASAR 189
            LLWMVES N +  KL  S +GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSS-SGDTQPIWSPKCNLLGSQVSTCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFAL 249
             G         LHK LD+ +    KF L+VIF++I +  +PGS +IL+LYLL+T+LFA+
Sbjct: 182 HVGASGDTHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAV 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

[Close]
BLAST of CmaCh12G007650 vs. TrEMBL
Match: A0A0S3T1L8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G048700 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 133/262 (50.76%), Postives = 168/262 (64.12%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQFSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----DTDAASAR 189
            LLWMVES N +  KL  S +GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSS-SGDTQPIWSPKCNLLGSQVSTCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFAL 249
             G         LHK LD+ +    KF L+VIF++I +  +PGS +IL+LYLL+T+LFA+
Sbjct: 182 HVGASGDTHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAV 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

[Close]
BLAST of CmaCh12G007650 vs. TrEMBL
Match: I1JEB9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G114200 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 132/263 (50.19%), Postives = 172/263 (65.40%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  I  K+ S    Q   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSIGLKRGSKQPSQTSAECSDD-EVCSNASRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNC+LGLQ  V+K  + QI++P FI CPWCH LS R++YKGNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCILGLQWAVVKFPTQQIKIPFFISCPWCHLLSFRIIYKGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSD--------------TDAASARLPGIGR 189
            LLWMVES N +  K+  S   DNQP++S   +              + +  +RL G  R
Sbjct: 122 FLLWMVESLNGDRHKV-FSTCTDNQPIWSPKCNLLGSQVTNCNLRRASVSPCSRLLGSNR 181

Query: 190 -------QRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFA 249
                  +     LHK LD+ +H   KF LVVIF++I + ++P SA+IL+LY L+T++FA
Sbjct: 182 DVRDNDGETHHFSLHKSLDFFLHFTSKFPLVVIFLLIALFLVPCSAVILVLYFLVTIVFA 241

Query: 250 LPSLFIFYLALHALEKLMSDITS 252
           +PS  + Y A   +++L+ +ITS
Sbjct: 242 IPSFLVLYFAYPTIQRLVREITS 262

[Close]
BLAST of CmaCh12G007650 vs. TAIR10
Match: AT1G69330.1 (AT1G69330.1 RING/U-box superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 6.8e-54
Identity = 131/271 (48.34%), Postives = 166/271 (61.25%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEE-LECPICWESFNIVENI 69
           MW  ASN I  +  KK+   S Q   +CSDD+   S  SRDEE LECPICWESFNIVEN+
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDE--VSNISRDEEGLECPICWESFNIVENV 60

Query: 70  PYVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKN 129
           PYVLWCGH+LC+NCV GLQ  VL+++S  IR+P F+ CPWC  LS R+VYKGNLKFP KN
Sbjct: 61  PYVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKN 120

Query: 130 FILLWMVESFN----CNEGKLEH-SFNGDNQ-----PVFSRTSDTDAASARL---PGIGR 189
           F LLWMVES N     +  +  H S   DNQ     P  S +    +++  L   P +  
Sbjct: 121 FFLLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLGNHSSNNNLVARPLLRN 180

Query: 190 QRW--------------QLF-LHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLY 249
           Q                QLF  HK LD+ +    KF  V+IF++IV   IPGS +IL LY
Sbjct: 181 QSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILALY 240

Query: 250 LLITLLFALPSLFIFYLALHALEKLMSDITS 252
            L+T+LFA+P+  + Y A   LE+L+++ITS
Sbjct: 241 FLLTILFAVPAGLVLYFAYPILERLVNEITS 269

[Close]
BLAST of CmaCh12G007650 vs. TAIR10
Match: AT3G29270.1 (AT3G29270.1 RING/U-box superfamily protein)

HSP 1 Score: 195.7 bits (496), Expect = 3.5e-50
Identity = 115/256 (44.92%), Postives = 158/256 (61.72%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSK-QVFWECSDDDEVCSEGSRDEELECPICWESFNIVENI 69
           MW +AS+ + G    KN          ECSDDD V S GS+DE LECPICWESFNIVEN+
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDD-VSSVGSKDEGLECPICWESFNIVENV 68

Query: 70  PYVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKN 129
           PYVLWCGH++CKNC+LGLQ  ++K+ +  +++P+FI CPWC+ LS R+V++G L+FP KN
Sbjct: 69  PYVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKN 128

Query: 130 FILLWMVESFN----------CNEGKLEHSFNGDNQPVFSRTSDTDAASARLPG---IGR 189
           + +LWMVE  N            +G  +H+    +  + +R   +    +R      I R
Sbjct: 129 YFVLWMVERMNGERRNSPGGAQTDGNNDHTRETPSPCLHNRHHRSQPEPSRSVNDHRIPR 188

Query: 190 QRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFALPSLFIF 249
              Q  L K L + V L  KF LVVIF++I++  IP SA IL +Y+L+TLL ALPS  I 
Sbjct: 189 DNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPSFLIL 248

Query: 250 YLALHALEKLMSDITS 252
           Y A   L+ L+ +I +
Sbjct: 249 YFAYPCLDWLVREIVT 263

[Close]
BLAST of CmaCh12G007650 vs. TAIR10
Match: AT1G74370.1 (AT1G74370.1 RING/U-box superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 105/268 (39.18%), Postives = 151/268 (56.34%), Query Frame = 1 

Query: 10  MWKMASNAIA-GIRSKKNSAVSK--QVFWECSDDDEVCSEGSRDEELECPICWESFNIVE 69
           MW +AS +I  G  SK   A +K  +   + S D     + +++E+LECPICWESFN+VE
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGR---KTTKEEKLECPICWESFNVVE 60

Query: 70  NIPYVLWCGHSLCKNCVLGLQ-GCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFP 129
           N+PYVLWCGH++CK C+LGLQ   V+K ++   ++P F+ CPWC+ LSLR+V  G ++FP
Sbjct: 61  NVPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFP 120

Query: 130 SKNFILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSD----TDAASARLPG----IGRQR 189
           SKNF LLWMVES N +  +       DN+ V S   D     D  S    G    +  + 
Sbjct: 121 SKNFYLLWMVESMNGSRSEAP----SDNKRVASGQRDLRNRCDGVSNTALGDEGLLDNRS 180

Query: 190 W--------------QLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLI 249
           W                 + K +  V HL+ KF LVVIF+++ +  IP SA +L +Y  +
Sbjct: 181 WWNGVTRGFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFV 240

Query: 250 TLLFALPSLFIFYLALHALEKLMSDITS 252
           T   A+PS  + Y A  +L  L+ +I +
Sbjct: 241 TFALAVPSFLVLYFAFPSLNWLIREIAT 261

[Close]
BLAST of CmaCh12G007650 vs. NCBI nr
Match: gi|778703011|ref|XP_011655300.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 1.9e-98
Identity = 193/242 (79.75%), Postives = 210/242 (86.78%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MWK+ASNAIAGIRSKKNS VSKQVFWECSDD E CSE SRDEELECPICWESFNIVEN+P
Sbjct: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDD-EACSEASRDEELECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVL CGHSLCKNCVLGLQG VLK+A+ QIR+PI I CPWCHQLSLRVVYKGNLKFPSKNF
Sbjct: 61  YVLXCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSDTDAASARLPGIGRQRWQLFLHKHLDYV 189
            LLWMVESFN NEGKL+HSFN DN P+FS  S T   +     +  +R +LF + HLD+V
Sbjct: 121 FLLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGT-----VTSERRRLFFYNHLDFV 180

Query: 190 VHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFALPSLFIFYLALHALEKLMSDI 249
           VHLIFKFLL+VIFV+IV+ VIPGSALILLLYLLITLLFALPSL IFYLA HALEKLM+DI
Sbjct: 181 VHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDI 236

Query: 250 TS 252
           TS
Sbjct: 241 TS 236

[Close]
BLAST of CmaCh12G007650 vs. NCBI nr
Match: gi|659131481|ref|XP_008465708.1| (PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 5.5e-98
Identity = 192/242 (79.34%), Postives = 209/242 (86.36%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MWK+ASNAIAGIRSKKNS V KQVFWECSDD EVCSE SRDEELECPICWESFNIVEN+P
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDD-EVCSEASRDEELECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGHSLCKNCVLGLQG VLK+A+ Q+R+PI I CPWCHQLSLRVVYKGNLKFPSKNF
Sbjct: 61  YVLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFSRTSDTDAASARLPGIGRQRWQLFLHKHLDYV 189
            LLWMVESFN NEGKL+HSFN DNQ VFS  S T         +  +R +LF + HLD V
Sbjct: 121 FLLWMVESFNGNEGKLDHSFNSDNQSVFSLPSGT---------VTSERRRLFFYNHLDCV 180

Query: 190 VHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFALPSLFIFYLALHALEKLMSDI 249
           +HL+FKFLL VIFV+IV+ VIPGSALILLLYLLITLLFALPSL IFYLALHAL+KLM+DI
Sbjct: 181 IHLVFKFLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDI 232

Query: 250 TS 252
           TS
Sbjct: 241 TS 232

[Close]
BLAST of CmaCh12G007650 vs. NCBI nr
Match: gi|593788762|ref|XP_007157420.1| (hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris])

HSP 1 Score: 249.6 bits (636), Expect = 5.8e-63
Identity = 136/262 (51.91%), Postives = 172/262 (65.65%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  IR+K+++    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 1   MWSFASNALTSIRTKRSTKQLSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNCVLGLQ  VL   + QIR+P FI CPWCH LS R++YKGNLK+P KNF
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVLNFPTQQIRIPFFISCPWCHLLSFRIIYKGNLKYPCKNF 120

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----DTDAASAR 189
            LLWMVES N    KL  S  GD QP++S                R S         S R
Sbjct: 121 FLLWMVESLNGERHKLVSSC-GDTQPIWSPKCNLLGSQVSTCNLRRASMSPYSRQVGSNR 180

Query: 190 LPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFAL 249
             G+  +     LHK LD+ +H   KF L+VIF++I +  +PGSA+IL+LYLL+T++FA+
Sbjct: 181 DVGVSGEAHYFSLHKSLDFFLHFTSKFPLIVIFLLIALFAVPGSAVILILYLLVTIIFAI 240

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 241 PSFLVLYFAYPTIQRLIREITS 260

[Close]
BLAST of CmaCh12G007650 vs. NCBI nr
Match: gi|823157700|ref|XP_012478732.1| (PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii])

HSP 1 Score: 247.3 bits (630), Expect = 2.9e-62
Identity = 135/265 (50.94%), Postives = 175/265 (66.04%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASN IA I   K+S  + Q   ECSDD E+CS GSRDE LECPICWE FNIVEN+P
Sbjct: 1   MWSFASNTIASI-GLKSSKEANQACSECSDD-ELCSNGSRDEGLECPICWEPFNIVENVP 60

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LC+NC+LGLQ  VLK+ + QI++P+FI CPWCH +SLR+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCILGLQPAVLKLPTQQIKIPMFISCPWCHLISLRLVYKGNLKFPRKNF 120

Query: 130 ILLWMVESFNCNE-GKLEHSFNGDNQPVFSRTSDTDAASARLPGIGR------------- 189
            +LWM+ES N +  G    + +GDNQPV S   +    +  + G+ R             
Sbjct: 121 FILWMIESLNGDRYGISRRNLSGDNQPVGSLRCNLMLGNQAISGVVRRGSYANRSEQNRS 180

Query: 190 ---------QRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLL 249
                    +R    LHK LD+ +H   KF LV+IF+++V   IPGSA+ILLLY L+T++
Sbjct: 181 LDTGGRNNAERHHFSLHKSLDFFIHFTSKFPLVIIFLLVVFFAIPGSAVILLLYFLVTVV 240

Query: 250 FALPSLFIFYLALHALEKLMSDITS 252
           FA+PS  + Y A   L++L+ +ITS
Sbjct: 241 FAIPSFLVLYFAFPMLDRLVREITS 263

[Close]
BLAST of CmaCh12G007650 vs. NCBI nr
Match: gi|951075340|ref|XP_014492866.1| (PREDICTED: uncharacterized protein LOC106755266 [Vigna radiata var. radiata])

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-60
Identity = 133/262 (50.76%), Postives = 168/262 (64.12%), Query Frame = 1 

Query: 10  MWKMASNAIAGIRSKKNSAVSKQVFWECSDDDEVCSEGSRDEELECPICWESFNIVENIP 69
           MW  ASNA+  +R+K+ S    +   ECSDD EVCS  SRDE LECPICWESFNIVEN+P
Sbjct: 2   MWSFASNALTSLRTKRCSKQLSETNAECSDD-EVCSNSSRDEGLECPICWESFNIVENVP 61

Query: 70  YVLWCGHSLCKNCVLGLQGCVLKVASCQIRVPIFIFCPWCHQLSLRVVYKGNLKFPSKNF 129
           YVLWCGH+LCKNCVLGLQ  V+   + QIR+P FI CPWCH LS R++Y GNLK+P KNF
Sbjct: 62  YVLWCGHTLCKNCVLGLQWAVVNFPTQQIRIPFFISCPWCHLLSFRIIYNGNLKYPCKNF 121

Query: 130 ILLWMVESFNCNEGKLEHSFNGDNQPVFS----------------RTS----DTDAASAR 189
            LLWMVES N +  KL  S  GD QP++S                R S         S R
Sbjct: 122 FLLWMVESLNGDRHKLVSSC-GDTQPIWSPKCNLLGSQVNSCNQRRASMSPYSRQVGSDR 181

Query: 190 LPGIGRQRWQLFLHKHLDYVVHLIFKFLLVVIFVVIVIVVIPGSALILLLYLLITLLFAL 249
             G   +     LHK LD+ +    KF L+VIF++I +  +PGS +IL+LYLL+T+LFA+
Sbjct: 182 DVGASGETHYFSLHKSLDFFLRFTSKFPLIVIFLLIALFAVPGSVVILILYLLLTILFAI 241

Query: 250 PSLFIFYLALHALEKLMSDITS 252
           PS  + Y A   +++L+ +ITS
Sbjct: 242 PSFLVLYFAYPTIQRLIREITS 261

The following BLAST results are available for this feature:
BLAST of CmaCh12G007650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007650 vs. TrEMBL
Match NameE-valueIdentityDescription
V7CH03_PHAVU4.0e-6351.91Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G068700g PE=4 SV=1[more]
A0A0D2RKN8_GOSRA2.0e-6250.94Uncharacterized protein OS=Gossypium raimondii GN=B456_005G144000 PE=4 SV=1[more]
A0A0L9UTG9_PHAAN3.2e-6050.76Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g118800 PE=4 SV=1[more]
A0A0S3T1L8_PHAAN3.2e-6050.76Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G048700 PE=... [more]
I1JEB9_SOYBN1.2e-5950.19Uncharacterized protein OS=Glycine max GN=GLYMA_02G114200 PE=4 SV=1[more]
BLAST of CmaCh12G007650 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69330.16.8e-5448.34 RING/U-box superfamily protein[more]
AT3G29270.13.5e-5044.92 RING/U-box superfamily protein[more]
AT1G74370.11.1e-3839.18 RING/U-box superfamily protein[more]
BLAST of CmaCh12G007650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778703011|ref|XP_011655300.1|1.9e-9879.75PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218619 [Cucumis sa... [more]
gi|659131481|ref|XP_008465708.1|5.5e-9879.34PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo][more]
gi|593788762|ref|XP_007157420.1|5.8e-6351.91hypothetical protein PHAVU_002G068700g [Phaseolus vulgaris][more]
gi|823157700|ref|XP_012478732.1|2.9e-6250.94PREDICTED: uncharacterized protein LOC105794222 [Gossypium raimondii][more]
gi|951075340|ref|XP_014492866.1|4.6e-6050.76PREDICTED: uncharacterized protein LOC106755266 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR027370Znf-RING_LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007650.1CmaCh12G007650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 55..110
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 50..111
score: 6.
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 74..83
scor
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 55..83
score: 5.
NoneNo IPR availablePANTHERPTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 26..251
score: 7.8
NoneNo IPR availablePANTHERPTHR13139:SF47SUBFAMILY NOT NAMEDcoord: 26..251
score: 7.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 50..112
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G007650CmoCh12G006640Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G007650CmoCh05G009330Cucurbita moschata (Rifu)cmacmoB197
CmaCh12G007650Cp4.1LG07g05400Cucurbita pepo (Zucchini)cmacpeB203
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G007650CmaCh05G009160Cucurbita maxima (Rimu)cmacmaB197
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G007650Cucurbita maxima (Rimu)cmacmaB006
CmaCh12G007650Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G007650Cucurbita moschata (Rifu)cmacmoB178
CmaCh12G007650Cucurbita pepo (Zucchini)cmacpeB207