CmoCh10G010540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G010540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	23.2 kDa heat shock protein
Location	Cmo_Chr10 : 5590943 .. 5591889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAGAGAAGTTAGAGCGAAAGAGAAATTAGAATTACCGGAGAGAAAAATCAAACGCAATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTGACATTTTCCACTTTGAGTTTTGCCAGTTTCAAAATGTATTTTCACTAATTTAATTTTAATATATTTTTAAAAATAACCTTCCAAATTACTATATATTATTTTTAAGCGTTATTAAAAATAAATTAATATTAAATATATATAATTATATTGTAAACAAATATATATATATATATATATATTTTTTTTTTTAAATTAATAATAAATTTGAATTTGTTGAATTTAACAAATTTTTGGATGTATCAGATTTTCAGAATACCGTTAGATCAAATAGCTTAAAAATAAAATAGAAATTAAATTAAATTGTTGAAAACACAAACAATTTTTAATTTATGAAAATTTGAATTTACCATTGAATTTTCGATCTTTTCTGCAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCACCGGAAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGCAAGTGGCTCCGATTCCTCAACGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCGAGTTTGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCATCGGAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCTCTACTCGAGGGATTGGACGGGTGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTCATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA

mRNA sequence

ATCAAGAGAAGTTAGAGCGAAAGAGAAATTAGAATTACCGGAGAGAAAAATCAAACGCAATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCACCGGAAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGCAAGTGGCTCCGATTCCTCAACGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCGAGTTTGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCATCGGAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCTCTACTCGAGGGATTGGACGGGTGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTCATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA

Coding sequence (CDS)

ATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCACCGGAAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGCAAGTGGCTCCGATTCCTCAACGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCGAGTTTGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCATCGGAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCTCTACTCGAGGGATTGGACGGGTGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTCATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA

Homology

[Close]

BLAST of CmoCh10G010540 vs. Swiss-Prot
Match: RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-08
Identity = 37/127 (29.13%), Postives = 62/127 (48.82%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKL-RISGERRLTSGKWLRFLN 69
           Y DF P  +    PE+ +L + L GF +  ++V    + K+ R++GER L + KW RF  
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNE 75

Query: 70  EIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPPPTASTRGI 129
              +P++   +KI   F+K +L +T P++T    +  P    +E  A  +       R +
Sbjct: 76  VFTVPQNCLVDKIHGSFKKNVLTITMPKETITKVAYLPETSRTEAAALEKAAKLEEKRLL 135

Query: 130 GRVRRGE 136
              RR E
Sbjct: 136 EESRRKE 142

[Close]

BLAST of CmoCh10G010540 vs. TrEMBL
Match: A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600110 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-35
Identity = 76/124 (61.29%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K + +FEP  D + HP++ +L+VHL GF  N L+V+VTSTGKLR+SGER+L+S
Sbjct: 1   MDPSSSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSS 60

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           GKWLRF  EIDIP DADT+ ISA+ E+G+LYV QP+K SA SSN PP Q  +PKA+SQPP
Sbjct: 61  GKWLRFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSSNIPPVQQPKPKAQSQPP 120

Query: 121 PTAS 125
           P+A+
Sbjct: 121 PSAT 124

[Close]

BLAST of CmoCh10G010540 vs. TrEMBL
Match: A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600100 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.1e-35
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K++ +FEP  D +HHP+SH+L+VHL  F  N LEV+VTSTGKLR+SG+R L++
Sbjct: 3   MNPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSN 62

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           G WLRF  EIDIP DADT+KISA+ E+GILYV QP+K SA SSN PP Q S+PK +SQ P
Sbjct: 63  GTWLRFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHP 122

Query: 121 PTAS 125
           P A+
Sbjct: 123 PAAT 126

[Close]

BLAST of CmoCh10G010540 vs. TrEMBL
Match: G7KHG4_MEDTR (Hsp20/alpha crystallin family protein OS=Medicago truncatula GN=MTR_5g087450 PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGKWLRFLNE 69
           Y +FEP  D  H   S  L++ L GF ++ L V+VTST  LR+SGER++   KW RF  E
Sbjct: 14  YDEFEPPSDWDHEDTSDTLILMLPGFKKDQLRVQVTSTRVLRVSGERQMNEKKWRRFRKE 73

Query: 70  IDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQP 120
             IP  +DTN I A+FE GILY+  P+    +S  N    P++P  + +P
Sbjct: 74  FSIPPHSDTNNIGAKFEAGILYIKLPK---LISQQNIVPTPTKPTTQQEP 120

[Close]

BLAST of CmoCh10G010540 vs. TrEMBL
Match: K4DAL3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   SSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGKWL 64
           +S ++Y DF P  + +   +S +LL+HL GF +  + V++T TG L+ISG+R +   KWL
Sbjct: 7   ASNQTYEDFVPTTELVQEQDSDILLIHLTGFKKEQVRVQLTKTGILKISGQRPVAESKWL 66

Query: 65  RFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 121
           RF  +  + ++ D  KISA+FE GIL+V QP+  ++ S N     P+    + Q P
Sbjct: 67  RFQKDFPVSQNCDKTKISAKFENGILHVKQPKLITS-SENKGQELPTSDAQQQQKP 121

[Close]

BLAST of CmoCh10G010540 vs. TrEMBL
Match: A0A0J8BEA6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092770 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-14
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGKWLRFLNE 69
           Y DF+P  +  H   + +LL HL GF +  + +   S G LRI GER +TS KW RF  E
Sbjct: 23  YEDFKPTSEWKHEDRAVILLYHLPGFAKEQIRILAESRGILRIRGERLVTSNKWSRFEEE 82

Query: 70  IDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNP 107
           + +PED + ++I A+FE GIL +T P+K   +   +P
Sbjct: 83  VVVPEDCNMSEIRAKFEGGILRITMPKKIITIDKKHP 119

[Close]

BLAST of CmoCh10G010540 vs. TAIR10
Match: AT5G20970.1 (AT5G20970.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGKWLRFLNE 69
           Y++FEP       P++ +L+  L GF +  L+V VT+T KLR++GER     KW+RF  E
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 70  IDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPP 108
           I +P   D + +SA F+   LY+  P+  + +    PP
Sbjct: 70  IPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQTKPP 107

[Close]

BLAST of CmoCh10G010540 vs. TAIR10
Match: AT2G27140.1 (AT2G27140.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-12
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGKWLRFLNE 69
           Y +FEPL +         L ++L GF +  L+V+VT+T KLR+ G+R   + KW+RF  E
Sbjct: 14  YDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKE 73

Query: 70  IDIPEDADTNKISAEFEKGILYVTQPR-------KTSAVSSNNPPAQPSE------PKAE 127
             IP + D + +SA+FE   L V  PR        +   ++  PP  P E      P A+
Sbjct: 74  FPIPPNIDVDSVSAKFEGANLVVRLPRTEPMGKQPSPIGTATKPPPVPKENPNLPSPSAK 133

[Close]

BLAST of CmoCh10G010540 vs. TAIR10
Match: AT1G54400.1 (AT1G54400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 43/156 (27.56%), Postives = 74/156 (47.44%), Query Frame = 1


Query: 10  YRDFEPLLDCLHHPESHLLLVHL-LGFTRNNLEVRVTSTGKLRISGERRLTSGKWLRFLN 69
           Y + EP        +  +L +HL  G  + +L++++ ++G L I+G   +   K +RF+ 
Sbjct: 13  YDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITGGCPVDQTKTIRFMK 72

Query: 70  EIDIPEDADTNKISAEFEKGILYVTQPRKTS-----AVSSNNPPAQPSEPKAESQPPPTA 129
           E  + +D   N+I A+F KG+LYVT P+        +VS      Q   PK +      A
Sbjct: 73  ETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPIAAGLSVSLKGATPQHQTPKTDEGMRNVA 132

Query: 130 STRG-----IGRVRRGEWLRRNMVNLALGAAAVFVI 155
           +         G +++  W R+ +V    G AAV V+
Sbjct: 133 NCSSEFYSKFGSLKQRLW-RKTVVE---GVAAVVVV 164

[Close]

BLAST of CmoCh10G010540 vs. TAIR10
Match: AT5G37670.1 (AT5G37670.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 29/113 (25.66%), Postives = 53/113 (46.90%), Query Frame = 1


Query: 7   FKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGE----------- 66
           F+ +     L+D +    SH+  +++ G+ + +++V++     L I GE           
Sbjct: 14  FQEWSRSTALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLV 73

Query: 67  -----RRLTSGKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSS 104
                R   SG    FL  I++PE+   +++ A  E G+L V  P+ TS+ SS
Sbjct: 74  WHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSKSS 126

[Close]

BLAST of CmoCh10G010540 vs. TAIR10
Match: AT5G12030.1 (AT5G12030.1 heat shock protein 17.6A)

HSP 1 Score: 48.1 bits (113), Expect = 6.1e-06
Identity = 30/109 (27.52%), Postives = 57/109 (52.29%), Query Frame = 1


Query: 18  DCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSG-----KWLR------- 77
           D + HP++++  V + G   + ++V++ +   L +SG+R+  +      K++R       
Sbjct: 49  DVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGK 108

Query: 78  FLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPK 115
           F+ +  +P++AD  KISA    G+L VT P+         PP +P +PK
Sbjct: 109 FMRKFQLPDNADLEKISAACNDGVLKVTIPKL--------PPPEPKKPK 149

[Close]

BLAST of CmoCh10G010540 vs. NCBI nr
Match: gi|659100303|ref|XP_008451026.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K++ +FEP  D +HHP+SH+L+VHL GF  N L+V+VTSTGKLR+SGER+L +
Sbjct: 1   MDPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           GKWLRF  EIDIP DADT+KISA+ E+GILYV QP+K    SSN PP Q  +PKA+SQPP
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQPKPKAQSQPP 120

Query: 121 PTAS 125
           P A+
Sbjct: 121 PAAT 124

[Close]

BLAST of CmoCh10G010540 vs. NCBI nr
Match: gi|659100301|ref|XP_008451025.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K++ +FEP  D +HHP+SH+L+VHL GF  N L+V+VTSTGKLR+SGER+L +
Sbjct: 1   MDPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           GKWLRF  EIDIP DADT+KISA+ E+GILYV QP+K    SSN PP Q  +PKA+SQPP
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQPKPKAQSQPP 120

Query: 121 PTAS 125
           P A+
Sbjct: 121 PAAT 124

[Close]

BLAST of CmoCh10G010540 vs. NCBI nr
Match: gi|659100306|ref|XP_008451028.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 6.9e-36
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K++++FEP  D +HHP+SH+L+V L GF  N L+V+VTSTGKLR+SGER+L +
Sbjct: 1   MDPSSSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           GKWLRF  EIDIP DADT+KISA+ E+GILYV QP+K SA SSN PP Q  +PK +SQPP
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQPKPKPQSQPP 120

Query: 121 PTAS 125
           P A+
Sbjct: 121 PAAT 124

[Close]

BLAST of CmoCh10G010540 vs. NCBI nr
Match: gi|778665351|ref|XP_004144143.2| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-35
Identity = 76/124 (61.29%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K + +FEP  D + HP++ +L+VHL GF  N L+V+VTSTGKLR+SGER+L+S
Sbjct: 1   MDPSSSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSS 60

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           GKWLRF  EIDIP DADT+ ISA+ E+G+LYV QP+K SA SSN PP Q  +PKA+SQPP
Sbjct: 61  GKWLRFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSSNIPPVQQPKPKAQSQPP 120

Query: 121 PTAS 125
           P+A+
Sbjct: 121 PSAT 124

[Close]

BLAST of CmoCh10G010540 vs. NCBI nr
Match: gi|778665348|ref|XP_011648542.1| (PREDICTED: protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.9e-35
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTS 60
           M   SS K++ +FEP  D +HHP+SH+L+VHL  F  N LEV+VTSTGKLR+SG+R L++
Sbjct: 3   MNPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSN 62

Query: 61  GKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPP 120
           G WLRF  EIDIP DADT+KISA+ E+GILYV QP+K SA SSN PP Q S+PK +SQ P
Sbjct: 63  GTWLRFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHP 122

Query: 121 PTAS 125
           P A+
Sbjct: 123 PAAT 126

The following BLAST results are available for this feature:

BLAST of CmoCh10G010540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTM2D_ARATH	2.7e-08	29.13	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 ...	[more]

BLAST of CmoCh10G010540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2E7_CUCSA	2.4e-35	61.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600110 PE=3 SV=1	[more]
A0A0A0LWW1_CUCSA	4.1e-35	62.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600100 PE=3 SV=1	[more]
G7KHG4_MEDTR	1.8e-14	42.73	Hsp20/alpha crystallin family protein OS=Medicago truncatula GN=MTR_5g087450 PE=...	[more]
K4DAL3_SOLLC	2.3e-14	37.93	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A0J8BEA6_BETVU	6.8e-14	41.24	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092770 PE=3 S...	[more]

BLAST of CmoCh10G010540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20970.1	1.6e-14	36.73	HSP20-like chaperones superfamily protein	[more]
AT2G27140.1	5.7e-12	33.85	HSP20-like chaperones superfamily protein	[more]
AT1G54400.1	2.5e-07	27.56	HSP20-like chaperones superfamily protein	[more]
AT5G37670.1	2.1e-06	25.66	HSP20-like chaperones superfamily protein	[more]
AT5G12030.1	6.1e-06	27.52	heat shock protein 17.6A	[more]

BLAST of CmoCh10G010540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100303\|ref\|XP_008451026.1\|	2.4e-36	62.90	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like isoform X2 [Cucumis m...	[more]
gi\|659100301\|ref\|XP_008451025.1\|	2.4e-36	62.90	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X...	[more]
gi\|659100306\|ref\|XP_008451028.1\|	6.9e-36	62.90	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ...	[more]
gi\|778665351\|ref\|XP_004144143.2\|	3.4e-35	61.29	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus]	[more]
gi\|778665348\|ref\|XP_011648542.1\|	5.9e-35	62.10	PREDICTED: protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G010540.1	CmoCh10G010540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 20..100 score: 2.
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 18..96 score: 10
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 8..100 score: 7.0
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 10..99 score: 3.84
None	No IPR available	PANTHER	PTHR11527:SF156	HEAT SHOCK FAMILY PROTEIN	coord: 10..123 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G010540	Cucsa.142370	Cucumber (Gy14) v1	cgycmoB0394
CmoCh10G010540	CmaCh10G010000	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G010540	CmaCh11G007900	Cucurbita maxima (Rimu)	cmacmoB105
CmoCh10G010540	CmaCh02G011790	Cucurbita maxima (Rimu)	cmacmoB573
CmoCh10G010540	Cla011096	Watermelon (97103) v1	cmowmB037
CmoCh10G010540	Csa1G600100	Cucumber (Chinese Long) v2	cmocuB047
CmoCh10G010540	ClCG03G014410	Watermelon (Charleston Gray)	cmowcgB045
CmoCh10G010540	Lsi06G004090	Bottle gourd (USVL1VR-Ls)	cmolsiB059
CmoCh10G010540	Cp4.1LG05g05490	Cucurbita pepo (Zucchini)	cmocpeB074
CmoCh10G010540	Cla97C03G064610	Watermelon (97103) v2	cmowmbB046
CmoCh10G010540	Bhi02G001439	Wax gourd	cmowgoB0072
CmoCh10G010540	Carg18028	Silver-seed gourd	carcmoB0240
CmoCh10G010540	Carg06128	Silver-seed gourd	carcmoB0027

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh10G010540	CmoCh11G007950	Cucurbita moschata (Rifu)	cmocmoB044
CmoCh10G010540	CmoCh02G012130	Cucurbita moschata (Rifu)	cmocmoB072

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G010540	Cucumber (Chinese Long) v3	cmocucB0053
CmoCh10G010540	Cucumber (Gy14) v1	cgycmoB0395
CmoCh10G010540	Wild cucumber (PI 183967)	cmocpiB050
CmoCh10G010540	Melon (DHL92) v3.5.1	cmomeB058
CmoCh10G010540	Cucurbita pepo (Zucchini)	cmocpeB062
CmoCh10G010540	Cucurbita pepo (Zucchini)	cmocpeB075
CmoCh10G010540	Cucumber (Gy14) v2	cgybcmoB013
CmoCh10G010540	Melon (DHL92) v3.6.1	cmomedB061