Carg06128 (gene) Silver-seed gourd

NameCarg06128
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCucurbita_argyrosperma_scaffold_026 : 1205879 .. 1207018 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTTCGTCCACAAGCTTTCAGAATATTACGCCTCAAATCAGTTTCAAATATTATCCCGGGTCTCATGTTCTTACCATCAACGTCCAAGGTTTGACATTTTCCCCTTCTTTTGTGAAAATATTAATTCATAATTATATATATATATATATATATATAATTAAAATTCACCATTTAATTTTAATATATTTTAAAAAATAACCTTCCAATTTGTTATATATTATTAAAAATAAATTAATATTATCTGGTAAACAAATATATATTTTTAAATTTAAATTTATAATTTTCATTTAAATCTTCATCATACCTTTAGATCAAATAGCTTAAATATAAAATATAAATTAAATTAAATAGTTGAAAAAACAATCCATTTTTAATTTATGAAAATTTGACTGTTAGACGATGAAAGTCTCACATCTGCCAATTTAGAGAATAATCATGGTTTTATAAACAAAGAATACTCTTCATCCGTAAGAGGCATTTTGGAGAAGCCCAAAGCAAAACCACGAGAGCTTATACTCAAAGTGGACAATATCATATCATTGTTGAGAGTCGTGTTTGTCTAACATGGTATTAGAGGCATGCCTTAAACTTAGTCGTGTTAATAGTAGATTGGTAAATCCTCAAACATCGAACAAAGGAAAGCCACCAGAGCTTATGCTACGATTGTGGAGAGTCGTGTTGGTCTGACGTTTAGAATTTTGGATTTTTTCTGCAGATTTCACGAGCAACGATCTGAAAGTTCAGGTGACATGCGCCTTAAAGTTGAGGATCAGCGGCAAACGGAGGGTGAACTGCGGCAAGTGTATCGGATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATTTTCAAGATCTCTGCCAAGGTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCAGTGAAGGGAGTGGATGTGGGGGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTATGGGCCATGAAAGCCTTCAGGGAAGGGAGTGGATGGTTGGGAAGAGGAGGATGGTTGAGGAGAAACATGGTGAATATGGCTCTAGGGGCTGCTGTTTTCGTCATTGTGTATCTCTGCTGTTTTTGTCATTGTGTATCTCAATCATACAAACAATGA

mRNA sequence

ATGGATCCTTCGTCCACAAGCTTTCAGAATATTACGCCTCAAATCAGTTTCAAATATTATCCCGGGTCTCATGTTCTTACCATCAACGTCCAAGATTTCACGAGCAACGATCTGAAAGTTCAGGTGACATGCGCCTTAAAGTTGAGGATCAGCGGCAAACGGAGGGTGAACTGCGGCAAGTGTATCGGATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATTTTCAAGATCTCTGCCAAGGTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCAGTGAAGGGAGTGGATGTGGGGGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTATGGGCCATGAAAGCCTTCAGGGAAGGGAGTGGATGGTTGGGAAGAGGAGGATGGTTGAGGAGAAACATGGTGAATATGGCTCTAGGGGCTGCTGTTTTCGTCATTGTGTATCTCTGCTGTTTTTGTCATTGTGTATCTCAATCATACAAACAATGA

Coding sequence (CDS)

ATGGATCCTTCGTCCACAAGCTTTCAGAATATTACGCCTCAAATCAGTTTCAAATATTATCCCGGGTCTCATGTTCTTACCATCAACGTCCAAGATTTCACGAGCAACGATCTGAAAGTTCAGGTGACATGCGCCTTAAAGTTGAGGATCAGCGGCAAACGGAGGGTGAACTGCGGCAAGTGTATCGGATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATTTTCAAGATCTCTGCCAAGGTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCAGTGAAGGGAGTGGATGTGGGGGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTATGGGCCATGAAAGCCTTCAGGGAAGGGAGTGGATGGTTGGGAAGAGGAGGATGGTTGAGGAGAAACATGGTGAATATGGCTCTAGGGGCTGCTGTTTTCGTCATTGTGTATCTCTGCTGTTTTTGTCATTGTGTATCTCAATCATACAAACAATGA

Protein sequence

MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGSGCGGRGEWLRRNMVNLALWAMKAFREGSGWLGRGGWLRRNMVNMALGAAVFVIVYLCCFCHCVSQSYKQ
BLAST of Carg06128 vs. NCBI nr
Match: XP_022960897.1 (heat shock protein beta-11-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 9.1e-40
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0

Query: 1  MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGK 60
          MDPSS +FQ+ITPQI  KYYPG HVLT+ VQDFTSNDLKVQVTC LKLRISG+RRVNCGK
Sbjct: 3  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGK 62

Query: 61 CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKAS 98
          CI FRKEIDIPADVDI+KISAK+EGGILSVRQPMKAS
Sbjct: 63 CIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS 99

BLAST of Carg06128 vs. NCBI nr
Match: XP_023533468.1 (uncharacterized protein LOC111795344 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 3.6e-36
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 0

Query: 1   MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGK 60
           MD SS +F +I PQI+ KYYPGSHVLT+ VQDFTSNDLKVQVT  LKLRI+G+RR+NCGK
Sbjct: 3   MDRSSKNFHDINPQINCKYYPGSHVLTVAVQDFTSNDLKVQVTRTLKLRITGQRRMNCGK 62

Query: 61  CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGSGCGGRGEW 110
           CI FRKEIDIPADVDI KISAK E GIL VRQPMKAS++G     RGEW
Sbjct: 63  CIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGR----RGEW 107

BLAST of Carg06128 vs. NCBI nr
Match: XP_022960894.1 (uncharacterized protein LOC111461557 [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 1   MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGK 60
           MD SS +FQ+I PQI++++YP SHVLT+ ++DFT NDLKVQVT   KLRI+G+RR+  GK
Sbjct: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60

Query: 61  CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
            + F KEI IPAD D  KISAK+E GIL V QP K S+  S
Sbjct: 61  GLRFLKEIVIPADADSSKISAKLEKGILYVTQPRKTSAVSS 101

BLAST of Carg06128 vs. NCBI nr
Match: XP_023533466.1 (nucleoporin NUP159-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGK 60
           MD SS SFQ+I PQI++++YP SHVLT  ++DFT ND+KVQVT   KLRISG+RR+  GK
Sbjct: 1   MDSSSKSFQDIEPQINWQHYPESHVLTATLKDFTRNDMKVQVTSTGKLRISGERRLTSGK 60

Query: 61  CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
            + F KEIDIP D D  KISAK+E GIL V QP   S+  S
Sbjct: 61  WLRFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSS 101

BLAST of Carg06128 vs. NCBI nr
Match: XP_022960896.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 6.1e-20
Identity = 64/144 (44.44%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 1   MDPSSTSFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGK 60
           MD S  S+++  P +   ++P SH+L +++  FT N+L+V+VT   KLRISG+RR+  GK
Sbjct: 3   MDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGK 62

Query: 61  CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMK------------------------- 120
            + F  EIDIP D D  KISA+ E GIL V QP K                         
Sbjct: 63  WLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAESQPPPT 122

BLAST of Carg06128 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 36/86 (41.86%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 8  FQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGKCIGFRKE 67
          +    P  ++K   G   LTI +  F    LKVQVT   KLR+ G R     K I FRKE
Sbjct: 14 YDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKE 73

Query: 68 IDIPADVDIFKISAKVEGGILSVRQP 94
            IP ++D+  +SAK EG  L VR P
Sbjct: 74 FPIPPNIDVDSVSAKFEGANLVVRLP 99

BLAST of Carg06128 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 0

Query: 8  FQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGKCIGFRKE 67
          +Q   P   +   P + VL  ++  F    LKV VT   KLR++G+R     K I F +E
Sbjct: 10 YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 68 IDIPADVDIFKISAKVEGGILSVRQP 94
          I +P  VDI  +SA  +   L +R P
Sbjct: 70 IPVPLTVDIDSVSAMFKDNKLYIRHP 95

BLAST of Carg06128 vs. Swiss-Prot
Match: sp|A5JV83|HSPBB_DANRE (Heat shock protein beta-11 OS=Danio rerio OX=7955 GN=hspb11 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-05
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 6   TSFQNITPQISFKYYPGSH-VLTINVQDFTSNDLKVQVTCALKLRISGK--RRVNCGK-- 65
           T+F+ I+ Q+  +   GSH  LT++ QDF+  +L V+     KLR+SGK  ++ + GK  
Sbjct: 71  TTFKPISFQLGKE---GSHYALTLDTQDFSPEELAVK-QVGRKLRVSGKTEKKQDDGKGS 130

Query: 66  ----CIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASS 99
               C  FR+E D+P DV+   +S  +  G L ++ P + ++
Sbjct: 131 YSYRCQEFRQEFDLPEDVNPESVSCSLNNGQLQIQAPREGNT 168

BLAST of Carg06128 vs. TrEMBL
Match: tr|A0A1S3BQ02|A0A1S3BQ02_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDPSST--SFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNC 60
           MDPSS+  +FQ   P+  + ++P SHVL + +  F SN LKVQVT   KLR+SG+R++  
Sbjct: 1   MDPSSSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 61  GKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
           GK + F KEIDIPAD D  KISAK+E GIL V+QP K S+  S
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSS 103

BLAST of Carg06128 vs. TrEMBL
Match: tr|A0A1S3BRB0|A0A1S3BRB0_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC103492432 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.9e-19
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDPSST--SFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNC 60
           MDPSS+  +F+   P+  + ++P SHVL +++  F SN LKVQVT   KLR+SG+R++  
Sbjct: 1   MDPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGN 60

Query: 61  GKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
           GK + F KEIDIPAD D  KISAK+E GIL V+QP K  +  S
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSS 103

BLAST of Carg06128 vs. TrEMBL
Match: tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDPSST--SFQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNC 60
           M+PSS+  +F+   P+  + ++P SHVL +++ DF SN L+VQVT   KLR+SG R ++ 
Sbjct: 3   MNPSSSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSN 62

Query: 61  GKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
           G  + F KEIDIPAD D  KISAK+E GIL V+QP K S+  S
Sbjct: 63  GTWLRFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSS 105

BLAST of Carg06128 vs. TrEMBL
Match: tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDPSSTS--FQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNC 60
           MDPSS++  F+   P+  +  +P + VL +++  F SN LKVQVT   KLR+SG+R+++ 
Sbjct: 1   MDPSSSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSS 60

Query: 61  GKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGS 102
           GK + F+KEIDIPAD D   ISAK+E G+L V+QP K S+  S
Sbjct: 61  GKWLRFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSS 103

BLAST of Carg06128 vs. TrEMBL
Match: tr|R0FXI8|R0FXI8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10023885mg PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.6e-08
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 8   FQNITPQISFKYYPGSHVLTINVQDFTSNDLKVQVTCALKLRISGKRRVNCGKCIGFRKE 67
           +++  P  ++K   G   LT+ +  F    LKVQ+T   KLR+ G R     K I FRKE
Sbjct: 37  YEDFEPLSNWKTEQGFEALTVYLPGFKKEQLKVQITTTRKLRVMGDRPAGANKWIRFRKE 96

Query: 68  IDIPADVDIFKISAKVEGGILSVRQP 94
             IP +VD+  +SAK EG  L VR P
Sbjct: 97  FPIPPNVDVDSVSAKFEGANLVVRLP 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022960897.19.1e-4086.60heat shock protein beta-11-like [Cucurbita moschata][more]
XP_023533468.13.6e-3675.23uncharacterized protein LOC111795344 [Cucurbita pepo subsp. pepo][more]
XP_022960894.14.5e-2360.40uncharacterized protein LOC111461557 [Cucurbita moschata][more]
XP_023533466.14.5e-2360.40nucleoporin NUP159-like [Cucurbita pepo subsp. pepo][more]
XP_022960896.16.1e-2044.44inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G27140.12.2e-1141.86HSP20-like chaperones superfamily protein[more]
AT5G20970.12.2e-0834.88HSP20-like chaperones superfamily protein[more]
Match NameE-valueIdentityDescription
sp|A5JV83|HSPBB_DANRE6.5e-0533.33Heat shock protein beta-11 OS=Danio rerio OX=7955 GN=hspb11 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BQ02|A0A1S3BQ02_CUCME2.0e-1953.40pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
tr|A0A1S3BRB0|A0A1S3BRB0_CUCME9.9e-1951.46inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA6.4e-1850.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1[more]
tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA3.2e-1748.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1[more]
tr|R0FXI8|R0FXI8_9BRAS4.6e-0840.70Uncharacterized protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v100238... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002068A-crystallin/Hsp20_dom
IPR008978HSP20-like_chaperone
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06128-RACarg06128-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 1..101
e-value: 6.3E-11
score: 44.1
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 7..97
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 22..97
e-value: 1.7E-5
score: 24.8
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 6..118
score: 12.967
NoneNo IPR availablePANTHERPTHR43670FAMILY NOT NAMEDcoord: 8..93
NoneNo IPR availablePANTHERPTHR43670:SF17SUBFAMILY NOT NAMEDcoord: 8..93
NoneNo IPR availableCDDcd00298ACD_sHsps_p23-likecoord: 25..91
e-value: 5.96804E-12
score: 56.8287