Carg18028 (gene) Silver-seed gourd

Overview
NameCarg18028
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCucurbita_argyrosperma_scaffold_171 : 486137 .. 487833 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGGTTTGCTAATTCATCTCGCCTCCTCCTTCTTCGTTCTTTGCAATTCAGCAATTCGAAAACCGCACTCTAAAATTATTTTAAATAAAATTTTGAAAATTTATTTATATCCTTCAAATTTGACATTTAAATTTTTGTTGTAATCTCAATAAATTTTAAAATTTAAATTTAGTCATGAAATTATTATTATTTTTATACAAATTAGTAATAAAATTATTTTTTACATGTATTTTCAAATAAAAGATCTTATGAATGATTTTTTTCTCAACAATAAACTAACCATATAAATTAATATTAGGCCAATTTTAATGAAAATACAAAGGATAATTTTTATACTATAAATTTCAAAAACTAGAATAAGATTAAAATATAGGAGCTAAAATTAAAAAAAAAAAAAAAAAAAAACTATTTTTTAAAGACAAATCTTACTTTAAAATGAGTTATTATTTTATTAACATATTTAGACATATAAATATAAACACATAAATGAGAATAAAACAGAGAAAATAATAATAAATGAGAATAATAAATAAATAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTGAAGTTGCAGAGCTTTCTCCTTCTTCATCGAGTTTTGTTGTTCTACAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

mRNA sequence

ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

Coding sequence (CDS)

ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

Protein sequence

MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKVDPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTVEESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Homology
[Close]
BLAST of Carg18028 vs. NCBI nr
Match: XP_022933280.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 2.9e-96
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0 

Query: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60
           MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL
Sbjct: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60

Query: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPXXXXXXX 120
           RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPXXXXXXX
Sbjct: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQNAPKSRNEERQSQSSSK 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQNAPKSRNEERQSQSSSK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQNAPKSRNEERQSQSSSK 180

Query: 181 RAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTV 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTV
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTV 300

Query: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 354
           EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Sbjct: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 353

[Close]
BLAST of Carg18028 vs. NCBI nr
Match: XP_022967447.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 257/431 (59.63%), Postives = 264/431 (61.25%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           SKNY+DFSP   W EDH+SRVLTVPLKDFRSSQLKVQVTSTGKLR  GERM EGNKWLRF
Sbjct: 4   SKNYRDFSPTFVWHEDHNSRVLTVPLKDFRSSQLKVQVTSTGKLRAFGERMIEGNKWLRF 63

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF------------PKADPRPPAEP 122
           YKELDVPTDTDTD ISAKF+DGVL+VKHPKKLSAA              PK + RPP   
Sbjct: 64  YKELDVPTDTDTDKISAKFEDGVLYVKHPKKLSAAASTNLPEKPTSMPKPKPESRPPPAA 123

Query: 123 PKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--------- 182
            KP     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          
Sbjct: 124 GKPKTDPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183

Query: 183 ----------------------------------------------------------PQ 242
                                                                     PQ
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVHLPTVPQ 243

Query: 243 NAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXXXXX 302
           NAP SRNE+RQSQSSSK APTSP    + KELEDQQNL     XXXXXXXXXXXXXXXXX
Sbjct: 244 NAPNSRNEKRQSQSSSKEAPTSPGTTDLKKELEDQQNL--LVGXXXXXXXXXXXXXXXXX 303

Query: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 354
           XXXXXXXXXXXXXXXXXXXXXXX                                     
Sbjct: 304 XXXXXXXXXXXXXXXXXXXXXXXKEAMEKTRDEERGKEVIGSKMGEGKGNGEKGSHGREE 363

[Close]
BLAST of Carg18028 vs. NCBI nr
Match: XP_023530362.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 257/344 (74.71%), Postives = 265/344 (77.03%), Query Frame = 0 

Query: 45  KLRVSGERMTEGNKWLRFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAAT------ 104
           KLRVSGERMTEGNKWLRFYKELDVPTD DTDNISAKFKDGVLFVKHPKKLSAAT      
Sbjct: 9   KLRVSGERMTEGNKWLRFYKELDVPTDIDTDNISAKFKDGVLFVKHPKKLSAATSTNLPE 68

Query: 105 -----------------FPKADPRPPAEPPKPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 164
                              KAD +        XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 69  XXXXXXXXXXXXXXXXXXXKADLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 128

Query: 165 XXXXXXXXXXXXXXXXXXXDP-----------QNAPKSRNEERQSQSSSKRA-PTSPRIQ 224
           XXXXXXXXXXXXXXXXXXX             QN+PKS++++RQ QSSSK   P+SP IQ
Sbjct: 129 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQNSPKSQDQKRQLQSSSKLGPPSSPGIQ 188

Query: 225 GIDKELEDQQNLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 284
            +DK LEDQQN TP              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 189 DMDKALEDQQNRTP--------GPPTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 248

Query: 285 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEESFLWRRE 344
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         RE
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRE 308

Query: 345 GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 354
           GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Sbjct: 309 GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 344

[Close]
BLAST of Carg18028 vs. NCBI nr
Match: KGN66370.1 (hypothetical protein Csa_1G600100 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-27
Identity = 154/373 (41.29%), Postives = 182/373 (48.79%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+++F PR DW    DS VL V L DF+S+QL+VQVTSTGKLRVSG+RM     WLRF
Sbjct: 9   AKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSNGTWLRF 68

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAAT----------------FPKADPRP 122
            KE+D+P D DTD ISAK + G+L+VK PKK SA +                 P A  +P
Sbjct: 69  EKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHPPAATKP 128

Query: 123 PAEPP--KPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQ- 182
            A+PP  +P                                                PQ 
Sbjct: 129 TADPPTVRPKAPNRRNEGLPTAFYPAIKTNLKNFPKSGDETGTPYPSIDAKKMHFHFPQT 188

Query: 183 ---NAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXX 242
              NAPKS+N+  QSQ+S K+ PT  ++Q                               
Sbjct: 189 VKPNAPKSQNDRPQSQASGKQIPTPLKLQ-------------------------EATGAP 248

Query: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302
                                               XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 ALGETSSTGSGHPVEDLAKKDKTEEKGKSHTKLRDAXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 303 XXXXXXXXXXXXXXXXXXTVEESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILY 354
           XXXXXXXXXXXXXXXXXX           GYKQVID VVKELRT MVTL LGIA  V+LY
Sbjct: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYKQVIDVVVKELRTNMVTLALGIAAFVVLY 356

[Close]
BLAST of Carg18028 vs. NCBI nr
Match: XP_008451028.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-27
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKP 114
            KE+D+P D DTD ISAK ++G+L+VK PKKLSA     +   PP + PKP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLSAT----SSNIPPVQQPKP 113

[Close]
BLAST of Carg18028 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-21
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKE 65
           YQ+F P   W  + D+ VL   L  F+  QLKV VT+T KLR++GER T GNKW+RF++E
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 66  LDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKP 114
           + VP   D D++SA FKD  L+++HPK  +          P  +PP P
Sbjct: 70  IPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEI--------PQTKPPTP 109

[Close]
BLAST of Carg18028 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 9.4e-17
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKE 65
           Y +F P  +W+ +     LT+ L  FR  QLKVQVT+T KLRV G+R    NKW+RF KE
Sbjct: 14  YDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKE 73

Query: 66  LDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKP 114
             +P + D D++SAKF+   L V+ P+       P         PP P
Sbjct: 74  FPIPPNIDVDSVSAKFEGANLVVRLPRTEPMGKQPSPIGTATKPPPVP 121

[Close]
BLAST of Carg18028 vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-11
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK+ VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. TAIR10
Match: AT1G54400.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-09
Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPL-KDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y +  P C WR   D  +L + L    +   LK+Q+ ++G L ++G    +  K +RF K
Sbjct: 13  YDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITGGCPVDQTKTIRFMK 72

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAA 98
           E  V  D   + I AKF  GVL+V  PK +  A
Sbjct: 73  ETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPIA 105

[Close]
BLAST of Carg18028 vs. TAIR10
Match: AT4G10250.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-07
Identity = 27/92 (29.35%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 12  RCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTE----GNKWLR------ 71
           R DW+E  +   + + +   +  ++K++V   G LRVSGER  E    G++W R      
Sbjct: 72  RVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYG 131

Query: 72  -FYKELDVPTDTDTDNISAKFKDGVLFVKHPK 93
            F+++  +P + D +++ AK ++GVL +   K
Sbjct: 132 KFWRQFKLPDNVDMESVKAKLENGVLTINLTK 163

[Close]
BLAST of Carg18028 vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK+ VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK+ VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK+ VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK+ VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-09
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKV-QVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y+DF P+ +W++  ++ +L + L  F   Q+KV  V S+  +RV+GER     KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNE 75

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKK 94
              VP +   D I   FK  VL +  PK+
Sbjct: 76  VFTVPQNCLVDKIHGSFKKNVLTITMPKE 104

[Close]
BLAST of Carg18028 vs. TrEMBL
Match: tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 154/373 (41.29%), Postives = 182/373 (48.79%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+++F PR DW    DS VL V L DF+S+QL+VQVTSTGKLRVSG+RM     WLRF
Sbjct: 9   AKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSNGTWLRF 68

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAAT----------------FPKADPRP 122
            KE+D+P D DTD ISAK + G+L+VK PKK SA +                 P A  +P
Sbjct: 69  EKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHPPAATKP 128

Query: 123 PAEPP--KPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQ- 182
            A+PP  +P                                                PQ 
Sbjct: 129 TADPPTVRPKAPNRRNEGLPTAFYPAIKTNLKNFPKSGDETGTPYPSIDAKKMHFHFPQT 188

Query: 183 ---NAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPXXXXXXXXXXXXXXXXX 242
              NAPKS+N+  QSQ+S K+ PT  ++Q                               
Sbjct: 189 VKPNAPKSQNDRPQSQASGKQIPTPLKLQ-------------------------EATGAP 248

Query: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302
                                               XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 249 ALGETSSTGSGHPVEDLAKKDKTEEKGKSHTKLRDAXXXXXXXXXXXXXXXXXXXXXXXX 308

Query: 303 XXXXXXXXXXXXXXXXXXTVEESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILY 354
           XXXXXXXXXXXXXXXXXX           GYKQVID VVKELRT MVTL LGIA  V+LY
Sbjct: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYKQVIDVVVKELRTNMVTLALGIAAFVVLY 356

[Close]
BLAST of Carg18028 vs. TrEMBL
Match: tr|A0A1S3BQ02|A0A1S3BQ02_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKP 114
            KE+D+P D DTD ISAK ++G+L+VK PKKLSA     +   PP + PKP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLSAT----SSNIPPVQQPKP 113

[Close]
BLAST of Carg18028 vs. TrEMBL
Match: tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +K +++F PR DW +  D+RVL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSSGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKP 114
            KE+D+P D DTDNISAK + GVL+VK PKK SA     +   PP + PKP
Sbjct: 67  QKEIDIPADADTDNISAKLEQGVLYVKQPKKPSAT----SSNIPPVQQPKP 113

[Close]
BLAST of Carg18028 vs. TrEMBL
Match: tr|A0A1S3BRB0|A0A1S3BRB0_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC103492432 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-26
Identity = 66/120 (55.00%), Postives = 79/120 (65.83%), Query Frame = 0 

Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+++F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF---------PKADPRPPAEPPKP 114
            KE+D+P D DTD ISAK ++G+L+VK PKKL   +          PKA  +PP    KP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQPKPKAQSQPPPAATKP 126

[Close]
BLAST of Carg18028 vs. TrEMBL
Match: tr|R0FI84|R0FI84_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10002617mg PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 0 

Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKE 65
           YQ+F P   W  + D+ VL   L  F+  QLKV VT+T KLR+ GER T GNKW+RF+KE
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVAVTATRKLRLIGERATGGNKWIRFHKE 69

Query: 66  LDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPP 112
           + VP   DTD+ISA FKD  L+++HPK       P+  P  P +PP
Sbjct: 70  IPVPLTVDTDSISAMFKDNKLYIRHPK--IKTEIPQTKPPSPVKPP 113

The following BLAST results are available for this feature:
BLAST of Carg18028 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933280.12.9e-96100.00inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata][more]
XP_022967447.13.4e-5759.63extensin-like [Cucurbita maxima][more]
XP_023530362.11.3e-3274.71pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita pepo subs... [more]
KGN66370.13.7e-2741.29hypothetical protein Csa_1G600100 [Cucumis sativus][more]
XP_008451028.16.3e-2760.36PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ... [more]
BLAST of Carg18028 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20970.16.3e-2144.44HSP20-like chaperones superfamily protein[more]
AT2G27140.19.4e-1740.74HSP20-like chaperones superfamily protein[more]
AT5G04890.17.7e-1135.96HSP20-like chaperones superfamily protein[more]
AT1G54400.11.9e-0934.41HSP20-like chaperones superfamily protein[more]
AT4G10250.11.8e-0729.35HSP20-like chaperones superfamily protein[more]
BLAST of Carg18028 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|D9UBX6|RTM2B_ARATH1.4e-0935.96Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UBX4|RTM2C_ARATH1.4e-0935.96Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|Q9M670|RTM2_ARATH1.4e-0935.96Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S... [more]
sp|D5K211|RTM2A_ARATH1.8e-0935.96Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UC01|RTM2D_ARATH3.1e-0935.96Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
BLAST of Carg18028 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA2.4e-2741.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1[more]
tr|A0A1S3BQ02|A0A1S3BQ02_CUCME4.2e-2760.36pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA1.2e-2659.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1[more]
tr|A0A1S3BRB0|A0A1S3BRB0_CUCME7.8e-2655.00inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|R0FI84|R0FI84_9BRAS1.1e-1949.06Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10002617mg PE=3 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002068A-crystallin/Hsp20_dom
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18028-RACarg18028-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 230..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..215
NoneNo IPR availablePANTHERPTHR43670:SF10SUBFAMILY NOT NAMEDcoord: 4..338
NoneNo IPR availablePANTHERPTHR43670FAMILY NOT NAMEDcoord: 4..338
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 14..92
e-value: 3.39085E-12
score: 60.6456
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 1..95
e-value: 6.8E-19
score: 69.8
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 5..93
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 14..96
e-value: 3.9E-9
score: 36.5
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 4..109
score: 16.501