CmoCh09G008200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G008200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr09 : 4213857 .. 4214063 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

mRNA sequence

ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA
Homology
[Close]
BLAST of CmoCh09G008200 vs. TrEMBL
Match: A0A0A0L4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1 

Query: 1  MFLCSSSICESRLLSSSSSS---SSLANTKNEIFVKNVKELLKVIVEEKEKLGRHFVSKR 60
          + LCSS I ESRLLSS S S   SS +N KNE+FVKN +E+LK I+EEKEKLGRHFVSKR
Sbjct: 18 LLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKR 77

Query: 61 LSPGGPDPRHH 69
          LSPGGPDPRHH
Sbjct: 78 LSPGGPDPRHH 87

[Close]
BLAST of CmoCh09G008200 vs. NCBI nr
Match: gi|700199923|gb|KGN55081.1| (hypothetical protein Csa_4G627800 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1 

Query: 1  MFLCSSSICESRLLSSSSSS---SSLANTKNEIFVKNVKELLKVIVEEKEKLGRHFVSKR 60
          + LCSS I ESRLLSS S S   SS +N KNE+FVKN +E+LK I+EEKEKLGRHFVSKR
Sbjct: 18 LLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKR 77

Query: 61 LSPGGPDPRHH 69
          LSPGGPDPRHH
Sbjct: 78 LSPGGPDPRHH 87

The following BLAST results are available for this feature:
BLAST of CmoCh09G008200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh09G008200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M1_CUCSA1.3e-1674.65Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1[more]
BLAST of CmoCh09G008200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh09G008200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199923|gb|KGN55081.1|1.9e-1674.65hypothetical protein Csa_4G627800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G008200.1CmoCh09G008200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G008200Csa4G627800Cucumber (Chinese Long) v2cmocuB012
CmoCh09G008200ClCG11G017560Watermelon (Charleston Gray)cmowcgB008
CmoCh09G008200CSPI04G23010Wild cucumber (PI 183967)cmocpiB012
CmoCh09G008200CsaV3_4G033240Cucumber (Chinese Long) v3cmocucB0016
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh09G008200CmoCh01G012930Cucurbita moschata (Rifu)cmocmoB018
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G008200Cucurbita pepo (Zucchini)cmocpeB021
CmoCh09G008200Cucurbita pepo (Zucchini)cmocpeB029
CmoCh09G008200Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G008200Bottle gourd (USVL1VR-Ls)cmolsiB011
CmoCh09G008200Bottle gourd (USVL1VR-Ls)cmolsiB015
CmoCh09G008200Cucumber (Gy14) v2cgybcmoB434
CmoCh09G008200Melon (DHL92) v3.6.1cmomedB027
CmoCh09G008200Silver-seed gourdcarcmoB0235
CmoCh09G008200Silver-seed gourdcarcmoB0428
CmoCh09G008200Silver-seed gourdcarcmoB0906
CmoCh09G008200Watermelon (97103) v2cmowmbB008
CmoCh09G008200Watermelon (97103) v2cmowmbB009
CmoCh09G008200Wax gourdcmowgoB0031
CmoCh09G008200Wax gourdcmowgoB0032
CmoCh09G008200Cucurbita maxima (Rimu)cmacmoB436
CmoCh09G008200Cucurbita moschata (Rifu)cmocmoB007
CmoCh09G008200Cucurbita moschata (Rifu)cmocmoB013
CmoCh09G008200Cucumber (Gy14) v1cgycmoB0316
CmoCh09G008200Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G008200Cucurbita maxima (Rimu)cmacmoB432
CmoCh09G008200Melon (DHL92) v3.5.1cmomeB027
CmoCh09G008200Watermelon (Charleston Gray)cmowcgB009
CmoCh09G008200Watermelon (97103) v1cmowmB029
CmoCh09G008200Watermelon (97103) v1cmowmB030