CmoCh09G008200.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G008200.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr09 : 4213857 .. 4214063 (-)
Sequence length	207

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

mRNA sequence

ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGTTCTTGTGTTCTTCCTCCATTTGTGAGAGTCGCTTGCTTTCTTCTTCTTCTTCTTCCTCTTCTTTGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCGTTGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Homology

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BLAST of CmoCh09G008200.1 vs. TrEMBL
Match: A0A0A0L4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MFLCSSSICESRLLSSSSSS---SSLANTKNEIFVKNVKELLKVIVEEKEKLGRHFVSKR 60
          + LCSS I ESRLLSS S S   SS +N KNE+FVKN +E+LK I+EEKEKLGRHFVSKR
Sbjct: 18 LLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKR 77

Query: 61 LSPGGPDPRHH 69
          LSPGGPDPRHH
Sbjct: 78 LSPGGPDPRHH 87

[Close]

BLAST of CmoCh09G008200.1 vs. NCBI nr
Match: gi|700199923|gb|KGN55081.1| (hypothetical protein Csa_4G627800 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MFLCSSSICESRLLSSSSSS---SSLANTKNEIFVKNVKELLKVIVEEKEKLGRHFVSKR 60
          + LCSS I ESRLLSS S S   SS +N KNE+FVKN +E+LK I+EEKEKLGRHFVSKR
Sbjct: 18 LLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKR 77

Query: 61 LSPGGPDPRHH 69
          LSPGGPDPRHH
Sbjct: 78 LSPGGPDPRHH 87

The following BLAST results are available for this feature:

BLAST of CmoCh09G008200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G008200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M1_CUCSA	1.3e-16	74.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1	[more]

BLAST of CmoCh09G008200.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh09G008200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199923\|gb\|KGN55081.1\|	1.9e-16	74.65	hypothetical protein Csa_4G627800 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh09G008200	CmoCh09G008200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh09G008200.1	CmoCh09G008200.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G008200.1.CDS.1	CmoCh09G008200.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G008200.1.exon.1	CmoCh09G008200.1.exon.1	exon