CsaV3_4G033240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 23527565 .. 23528521 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGACTTTTAATAAATAAATAAAATTGCACTCACTGATAGAAAAGTTTTATGTTTTTTGGTGGCCCATTTTACACTTATCTTTGCTTATGCAATCTATATATATAGGTAATTGTACAAGTGTGTATGAGAAATCTAACAAAAAAAAAAGGAAAAAAAGAAACAACCCCCTTAAAACAAAAGTGTGTGTGTTGTGAAGTTGAATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGAATAGTTATACATTTCTTCTTTTTCTTTCTTTCATTTTTACACTTTCAAGTTCAACGAAATCGCTTGATGAAAGTTGAACTAGAAATGGTAATAGAGAATGAGTTATGCTCAAATTTACGTCGTATTTGTTTTTGTTTTGTCCGTGAGCTATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATACACCACATCATTATTCCTCTTAATTTCTTTTCGATTTTAGTTTCGATCACATAGGTTAGAAGGATTTTAGAGTGAAAAGAAATGTACGTTGTGTTTGATACTCAAGACTTTATCGCTCTCACTTATAATTAGGGATAGACCGTATCACTATTAATTATTAATAAACACCTATTTACGATTATAGTCTATTAGTAACATATGATGTCATTGGGACTAACAAACCTAGAGCTAAATCTAAATTTTGTTTTATTAATAAACTATTTTGTGTTGT

mRNA sequence

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Protein sequence

MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
[Close]
BLAST of CsaV3_4G033240 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_4G627800 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]
BLAST of CsaV3_4G033240 vs. TrEMBL
Match: tr|A0A0A0L4M1|A0A0A0L4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESXXXXXXXXXXXXXXXXXXKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

The following BLAST results are available for this feature:
BLAST of CsaV3_4G033240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55081.11.6e-27100.00hypothetical protein Csa_4G627800 [Cucumis sativus][more]
BLAST of CsaV3_4G033240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4M1|A0A0A0L4M1_CUCSA1.0e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033240.1CsaV3_4G033240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..71
NoneNo IPR availablePANTHERPTHR33869FAMILY NOT NAMEDcoord: 11..87
NoneNo IPR availablePANTHERPTHR33869:SF6CLAVATA3/ESR CLE -RELATED PROTEIN 3-RELATEDcoord: 11..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G033240CSPI04G23010Wild cucumber (PI 183967)cpicucB212
CsaV3_4G033240CmaCh09G008270Cucurbita maxima (Rimu)cmacucB0028
CsaV3_4G033240CmoCh09G008200Cucurbita moschata (Rifu)cmocucB0016
CsaV3_4G033240CmoCh01G012930Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G033240Cp4.1LG02g01840Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G033240Cp4.1LG06g06660Cucurbita pepo (Zucchini)cpecucB0970
CsaV3_4G033240CsGy4G021420Cucumber (Gy14) v2cgybcucB171
CsaV3_4G033240ClCG11G017560Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G033240Lsi04G020260Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G033240Bhi09G002857Wax gourdcucwgoB426
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G033240Cucumber (Chinese Long) v3cuccucB164
CsaV3_4G033240Silver-seed gourdcarcucB0194
CsaV3_4G033240Silver-seed gourdcarcucB0196
CsaV3_4G033240Silver-seed gourdcarcucB0344
CsaV3_4G033240Silver-seed gourdcarcucB0690
CsaV3_4G033240Cucumber (Gy14) v2cgybcucB172
CsaV3_4G033240Cucumber (Gy14) v1cgycucB167
CsaV3_4G033240Cucumber (Gy14) v1cgycucB419
CsaV3_4G033240Cucurbita maxima (Rimu)cmacucB0034
CsaV3_4G033240Cucurbita maxima (Rimu)cmacucB0258
CsaV3_4G033240Cucurbita maxima (Rimu)cmacucB0396
CsaV3_4G033240Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G033240Cucurbita moschata (Rifu)cmocucB0022
CsaV3_4G033240Cucurbita moschata (Rifu)cmocucB0246
CsaV3_4G033240Cucurbita moschata (Rifu)cmocucB0393
CsaV3_4G033240Cucurbita pepo (Zucchini)cpecucB0270
CsaV3_4G033240Cucurbita pepo (Zucchini)cpecucB0976
CsaV3_4G033240Wild cucumber (PI 183967)cpicucB219
CsaV3_4G033240Bottle gourd (USVL1VR-Ls)cuclsiB326
CsaV3_4G033240Melon (DHL92) v3.5.1cucmeB299
CsaV3_4G033240Melon (DHL92) v3.6.1cucmedB291
CsaV3_4G033240Watermelon (Charleston Gray)cucwcgB349
CsaV3_4G033240Watermelon (97103) v1cucwmB367
CsaV3_4G033240Watermelon (97103) v2cucwmbB281
CsaV3_4G033240Watermelon (97103) v2cucwmbB335