ClCG11G017560 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G017560
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCLAVATA3/ESR-RELATED 3 LENGTH=83
LocationCG_Chr11 : 30822752 .. 30823069 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTCGTTTAAAGCTTTTGTTTTGGGTTGTTGTGTTGATATTGCTTTTGTGTTCTTCCATTTCTGAAAGTCGTTTGCTTTCTTCTTCTTCTACTTTGGATAAGAGAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATTATTGAAGAGAAAGAGAAGCTTGGAAGACATTTTGTATCCAAAAGACTCAGCCCAGGAGGACCTGATCCACGTCATCATTAGATTTCTTTTTCTCTTCTTCTTTGTTTTTTAGTTCAACAATCGCTGGACGGAGAAATGGTAGTAGGCGTCTTTGTTCACTGA

mRNA sequence

ATGGCTTGTCGTTTAAAGCTTTTGTTTTGGGTTGTTGTGTTGATATTGCTTTTGTGTTCTTCCATTTCTGAAAGTCGTTTGCTTTCTTCTTCTTCTACTTTGGATAAGAGAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATTATTGAAGAGAAAGAGAAGCTTGGAAGACATTTTGTATCCAAAAGACTCAGCCCAGGAGGACCTGATCCACTTCAACAATCGCTGGACGGAGAAATGGTAGTAGGCGTCTTTGTTCACTGA

Coding sequence (CDS)

ATGGCTTGTCGTTTAAAGCTTTTGTTTTGGGTTGTTGTGTTGATATTGCTTTTGTGTTCTTCCATTTCTGAAAGTCGTTTGCTTTCTTCTTCTTCTACTTTGGATAAGAGAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATTATTGAAGAGAAAGAGAAGCTTGGAAGACATTTTGTATCCAAAAGACTCAGCCCAGGAGGACCTGATCCACTTCAACAATCGCTGGACGGAGAAATGGTAGTAGGCGTCTTTGTTCACTGA

Protein sequence

MACRLKLLFWVVVLILLLCSSISESRLLSSSSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPLQQSLDGEMVVGVFVH
Homology
[Close]
BLAST of ClCG11G017560 vs. TrEMBL
Match: A0A0A0L4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 3  CRLKL-LFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIE 62
          C +KL LFW +VLILLLCSSISESRLLSS       SS+ +K+NELFVKN +EMLKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDP 76
          EKEKLGRHFVSKRLSPGGPDP
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDP 84

[Close]
BLAST of ClCG11G017560 vs. NCBI nr
Match: gi|700199923|gb|KGN55081.1| (hypothetical protein Csa_4G627800 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 3  CRLKL-LFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIE 62
          C +KL LFW +VLILLLCSSISESRLLSS       SS+ +K+NELFVKN +EMLKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDP 76
          EKEKLGRHFVSKRLSPGGPDP
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDP 84

The following BLAST results are available for this feature:
BLAST of ClCG11G017560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M1_CUCSA1.9e-2377.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1[more]
BLAST of ClCG11G017560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199923|gb|KGN55081.1|2.8e-2377.78hypothetical protein Csa_4G627800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G017560.1ClCG11G017560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G017560Csa4G627800Cucumber (Chinese Long) v2cuwcgB279
ClCG11G017560Bhi09G002857Wax gourdwcgwgoB181
ClCG11G017560CSPI04G23010Wild cucumber (PI 183967)cpiwcgB289
ClCG11G017560CmaCh09G008270Cucurbita maxima (Rimu)cmawcgB015
ClCG11G017560CmoCh01G012930Cucurbita moschata (Rifu)cmowcgB392
ClCG11G017560CmoCh09G008200Cucurbita moschata (Rifu)cmowcgB008
ClCG11G017560Lsi04G020260Bottle gourd (USVL1VR-Ls)lsiwcgB259
ClCG11G017560Cp4.1LG06g06660Cucurbita pepo (Zucchini)cpewcgB694
ClCG11G017560Cp4.1LG02g01840Cucurbita pepo (Zucchini)cpewcgB488
ClCG11G017560CsGy4G021420Cucumber (Gy14) v2cgybwcgB259
ClCG11G017560CsaV3_4G033240Cucumber (Chinese Long) v3cucwcgB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G017560Watermelon (97103) v2wcgwmbB064
ClCG11G017560Watermelon (97103) v2wcgwmbB082
ClCG11G017560Watermelon (Charleston Gray)wcgwcgB078
ClCG11G017560Cucumber (Gy14) v1cgywcgB192
ClCG11G017560Cucurbita maxima (Rimu)cmawcgB018
ClCG11G017560Cucurbita maxima (Rimu)cmawcgB288
ClCG11G017560Cucurbita maxima (Rimu)cmawcgB394
ClCG11G017560Cucumber (Chinese Long) v2cuwcgB282
ClCG11G017560Melon (DHL92) v3.5.1mewcgB457
ClCG11G017560Watermelon (97103) v1wcgwmB103
ClCG11G017560Cucurbita pepo (Zucchini)cpewcgB697
ClCG11G017560Bottle gourd (USVL1VR-Ls)lsiwcgB391
ClCG11G017560Melon (DHL92) v3.6.1medwcgB450
ClCG11G017560Silver-seed gourdcarwcgB0161
ClCG11G017560Silver-seed gourdcarwcgB0163
ClCG11G017560Silver-seed gourdcarwcgB0305
ClCG11G017560Silver-seed gourdcarwcgB0635