CSPI04G23010 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G23010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 21201036 .. 21201804 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCCATTTTACACTTATCTTTGCTTATGCAATCTATATATATAGGTAATTGTACAAGTGTGTATGAGAAATCTAACCAAAAAAAAAGGAAAAAAAGAAACAATCCCCTTAAAACAAAAGTGTGTGTGTTGTGAAGTTGAATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGAATAATTATACATTTCTTCTTTTTCTTTCTTTCATTTTTACACTTTCAAGTTCAACGAAATCGCTTGATGAAAGTTGAACTAGAAATGGTAATAGAGAATGAGTTATGCTCAAATTTACGTCGTATTTGTTTTTGTTTTGTCCGTGAGCTATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATACACCACATCATTATTCCTCTTAATTTCTTTTCGATTTTAGTTTCGATCACATAGGTTAGAAGGATTTTAGAGTGAAAAGAAATGTACGTTGTTTTTGATACTCAAGACTTTATTGCTCTCACTTATAATTAGGGATAGACCGTAT

mRNA sequence

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA
Homology
[Close]
BLAST of CSPI04G23010 vs. TrEMBL
Match: A0A0A0L4M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.0e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]
BLAST of CSPI04G23010 vs. NCBI nr
Match: gi|700199923|gb|KGN55081.1| (hypothetical protein Csa_4G627800 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 88
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

The following BLAST results are available for this feature:
BLAST of CSPI04G23010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G23010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M1_CUCSA6.0e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627800 PE=4 SV=1[more]
BLAST of CSPI04G23010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G23010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199923|gb|KGN55081.1|8.6e-38100.00hypothetical protein Csa_4G627800 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23010.1CSPI04G23010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 51..71
scor
NoneNo IPR availablePANTHERPTHR33869FAMILY NOT NAMEDcoord: 1..87
score: 3.1
NoneNo IPR availablePANTHERPTHR33869:SF5CLAVATA3/ESR (CLE)-RELATED PROTEIN 3coord: 1..87
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G23010Csa4G627800Cucumber (Chinese Long) v2cpicuB181
CSPI04G23010ClCG11G017560Watermelon (Charleston Gray)cpiwcgB289
CSPI04G23010Lsi04G020260Bottle gourd (USVL1VR-Ls)cpilsiB283
CSPI04G23010CsaV3_4G033240Cucumber (Chinese Long) v3cpicucB212
CSPI04G23010Bhi09G002857Wax gourdcpiwgoB421
CSPI04G23010CmaCh09G008270Cucurbita maxima (Rimu)cmacpiB021
CSPI04G23010CmoCh01G012930Cucurbita moschata (Rifu)cmocpiB466
CSPI04G23010CmoCh09G008200Cucurbita moschata (Rifu)cmocpiB012
CSPI04G23010Cp4.1LG06g06660Cucurbita pepo (Zucchini)cpecpiB785
CSPI04G23010Cp4.1LG02g01840Cucurbita pepo (Zucchini)cpecpiB567
CSPI04G23010CsGy4G021420Cucumber (Gy14) v2cgybcpiB169
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G23010Silver-seed gourdcarcpiB0194
CSPI04G23010Silver-seed gourdcarcpiB0196
CSPI04G23010Silver-seed gourdcarcpiB0345
CSPI04G23010Silver-seed gourdcarcpiB0688
CSPI04G23010Cucumber (Chinese Long) v3cpicucB220
CSPI04G23010Watermelon (97103) v2cpiwmbB286
CSPI04G23010Watermelon (97103) v2cpiwmbB338
CSPI04G23010Wild cucumber (PI 183967)cpicpiB149
CSPI04G23010Cucumber (Gy14) v1cgycpiB164
CSPI04G23010Cucumber (Gy14) v1cgycpiB412
CSPI04G23010Cucurbita maxima (Rimu)cmacpiB027
CSPI04G23010Cucurbita maxima (Rimu)cmacpiB345
CSPI04G23010Cucurbita maxima (Rimu)cmacpiB477
CSPI04G23010Cucumber (Chinese Long) v2cpicuB186
CSPI04G23010Melon (DHL92) v3.5.1cpimeB293
CSPI04G23010Watermelon (Charleston Gray)cpiwcgB348
CSPI04G23010Watermelon (97103) v1cpiwmB356
CSPI04G23010Cucurbita pepo (Zucchini)cpecpiB791
CSPI04G23010Bottle gourd (USVL1VR-Ls)cpilsiB307
CSPI04G23010Melon (DHL92) v3.6.1cpimedB287
CSPI04G23010Cucumber (Gy14) v2cgybcpiB174