CmoCh07G006420 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTACAGAGTCCAAGTAGCACCTTCTCAAGTTCACACGCTTGCCCATTCTCCCTCTCTCTCCTTCCCCTTTTATAAGCAACTCCTTTCCTTCCCATCCCTTTATACACTCACTTCCACAACCACGCATGGGTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCACCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCTGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCTCAAATCAGGTTCGTCAAGAAATTTATCAATAACTTATCAACTTAAATCTTTTTAGTTCTGGTAAACAATTACGAACCGATATTGACATGTTTTTTAATTGGGTTTTTTTATAGGGGTTGGAAACAGATGAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAGTCAAAAATCATACTTGCCTATCCATTGGCTTATATATAAACTTCTATCCATTGGCTATCTATTGGCTTATAGGGTTGAATTAATAATATTCTCTCAACTCTACCATATTGCCACCTTTCATAAACTTTTACAGCGCTTAATTTTAATGTACGAATTCCAAGAGTGAAAAAGAAAAACAATGAAGCACATGTTAAATTTGGATGTTGAGGCTGATTAGATATTTGGATCCAAGCGCCATGCAAGATTTAGGCAGCTTTTTGACACCAAGCATATGAGATGAATTTGATGATATAAATGGAAATGGTCCCTCGGGGTCGGGTTTCAACTTTAAGCGCTAATTAGCCAAAGTGGATCAAAGTGGCCGGCCATTGGTGGCTCCAACGCGTAGCAATTAAAACATGAGCGTAGAAGAAAAGGCAAATGGGG CGTACAGAGTCCAAGTAGCACCTTCTCAAGTTCACACGCTTGCCCATTCTCCCTCTCTCTCCTTCCCCTTTTATAAGCAACTCCTTTCCTTCCCATCCCTTTATACACTCACTTCCACAACCACGCATGGGTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCACCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCTGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCTCAAATCAGGGGTTGGAAACAGATGAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAGTCAAAAATCATACTTGCCTATCCATTGGCTTATATATAAACTTCTATCCATTGGCTATCTATTGGCTTATAGGGTTGAATTAATAATATTCTCTCAACTCTACCATATTGCCACCTTTCATAAACTTTTACAGCGCTTAATTTTAATGTACGAATTCCAAGAGTGAAAAAGAAAAACAATGAAGCACATGTTAAATTTGGATGTTGAGGCTGATTAGATATTTGGATCCAAGCGCCATGCAAGATTTAGGCAGCTTTTTGACACCAAGCATATGAGATGAATTTGATGATATAAATGGAAATGGTCCCTCGGGGTCGGGTTTCAACTTTAAGCGCTAATTAGCCAAAGTGGATCAAAGTGGCCGGCCATTGGTGGCTCCAACGCGTAGCAATTAAAACATGAGCGTAGAAGAAAAGGCAAATGGGG ATGGGTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCACCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCTGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCTCAAATCAGGGGTTGGAAACAGATGAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAG
BLAST of CmoCh07G006420 vs. Swiss-Prot
Match: PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 5.3e-11 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
BLAST of CmoCh07G006420 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09 Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 1
BLAST of CmoCh07G006420 vs. Swiss-Prot
Match: PSK4_ORYSJ (Phytosulfokines 4 OS=Oryza sativa subsp. japonica GN=PSK4 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.5e-08 Identity = 34/76 (44.74%), Postives = 42/76 (55.26%), Query Frame = 1
BLAST of CmoCh07G006420 vs. Swiss-Prot
Match: PSK5_ARATH (Phytosulfokines 5 OS=Arabidopsis thaliana GN=PSK5 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.1e-07 Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 1
BLAST of CmoCh07G006420 vs. Swiss-Prot
Match: PSK2_ARATH (Phytosulfokines 2 OS=Arabidopsis thaliana GN=PSK2 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 8.8e-06 Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TrEMBL
Match: A0A0A0KLK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495850 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 6.9e-18 Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TrEMBL
Match: B9SH34_RICCO (Phytosulfokines, putative OS=Ricinus communis GN=RCOM_0581720 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13 Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TrEMBL
Match: A0A0B0PQH6_GOSAR (Phytosulfokines 3-like protein OS=Gossypium arboreum GN=F383_10569 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TrEMBL
Match: A0A0D2SLH6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G026700 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TrEMBL
Match: W9QZQ5_9ROSA (Phytosulfokines 3 OS=Morus notabilis GN=L484_003349 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 9.7e-12 Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor) HSP 1 Score: 68.2 bits (165), Expect = 3.0e-12 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TAIR10
Match: AT5G65870.1 (AT5G65870.1 phytosulfokine 5 precursor) HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08 Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TAIR10
Match: AT2G22860.1 (AT2G22860.1 phytosulfokine 2 precursor) HSP 1 Score: 50.8 bits (120), Expect = 4.9e-07 Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1
BLAST of CmoCh07G006420 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor) HSP 1 Score: 48.1 bits (113), Expect = 3.2e-06 Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 1
BLAST of CmoCh07G006420 vs. NCBI nr
Match: gi|659079751|ref|XP_008440424.1| (PREDICTED: phytosulfokines 3 [Cucumis melo]) HSP 1 Score: 98.2 bits (243), Expect = 7.6e-18 Identity = 59/92 (64.13%), Postives = 65/92 (70.65%), Query Frame = 1
BLAST of CmoCh07G006420 vs. NCBI nr
Match: gi|700193427|gb|KGN48631.1| (hypothetical protein Csa_6G495850 [Cucumis sativus]) HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17 Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1
BLAST of CmoCh07G006420 vs. NCBI nr
Match: gi|255568659|ref|XP_002525303.1| (PREDICTED: phytosulfokines 3 [Ricinus communis]) HSP 1 Score: 81.3 bits (199), Expect = 9.7e-13 Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
BLAST of CmoCh07G006420 vs. NCBI nr
Match: gi|728847246|gb|KHG26689.1| (Phytosulfokines 3 -like protein [Gossypium arboreum]) HSP 1 Score: 81.3 bits (199), Expect = 9.7e-13 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
BLAST of CmoCh07G006420 vs. NCBI nr
Match: gi|823237627|ref|XP_012451457.1| (PREDICTED: phytosulfokines-like [Gossypium raimondii]) HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |