CmoCh04G026940 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G026940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin family protein
LocationCmo_Chr04 : 19610943 .. 19611251 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGAATTCTGCTCTGTTGAACTCTGAGACGACCTAGGGTTTACTTTCTTGGGGGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGATGATCGAGGTGGTGCTGAACGATCGGCTGGGGAAGAAGGTGAGAGTGAAGTGCAACGAGGACGACACCATCGGCGACTTGAAGAAGCTTGTGGCTGCTCAGACTGGGACTAGAGCCGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTGAGGGATTACGAAGTCCACGATGGCATGGGCCTTGAACTCTACTACAATTAA

mRNA sequence

TTTGGAATTCTGCTCTGTTGAACTCTGAGACGACCTAGGGTTTACTTTCTTGGGGGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGATGATCGAGGTGGTGCTGAACGATCGGCTGGGGAAGAAGGTGAGAGTGAAGTGCAACGAGGACGACACCATCGGCGACTTGAAGAAGCTTGTGGCTGCTCAGACTGGGACTAGAGCCGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTGAGGGATTACGAAGTCCACGATGGCATGGGCCTTGAACTCTACTACAATTAA

Coding sequence (CDS)

ATGATCGAGGTGGTGCTGAACGATCGGCTGGGGAAGAAGGTGAGAGTGAAGTGCAACGAGGACGACACCATCGGCGACTTGAAGAAGCTTGTGGCTGCTCAGACTGGGACTAGAGCCGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTGAGGGATTACGAAGTCCACGATGGCATGGGCCTTGAACTCTACTACAATTAA
BLAST of CmoCh04G026940 vs. Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-35
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EVHDGMGLELYY 73
          E+HDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of CmoCh04G026940 vs. Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EVHDGMGLELYY 73
          E+HDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of CmoCh04G026940 vs. Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EVHDGMGLELYY 73
          E+HDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of CmoCh04G026940 vs. Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EVHDGMGLELYY 73
          E+HDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

BLAST of CmoCh04G026940 vs. TrEMBL
Match: A0A078H902_BRANA (BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TrEMBL
Match: D7MTG3_ARALL (Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917558 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TrEMBL
Match: M4E4Y0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TrEMBL
Match: A0A0D3ABK7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TrEMBL
Match: A0A164ZFL5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019101 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TAIR10
Match: AT5G42300.1 (AT5G42300.1 ubiquitin-like protein 5)

HSP 1 Score: 149.8 bits (377), Expect = 6.4e-37
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. TAIR10
Match: AT3G45180.1 (AT3G45180.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-35
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNE+DTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHI L+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. NCBI nr
Match: gi|1021038076|gb|KZM95859.1| (hypothetical protein DCAR_019101 [Daucus carota subsp. sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. NCBI nr
Match: gi|672123820|ref|XP_008785280.1| (PREDICTED: ubiquitin-like protein 5 [Phoenix dactylifera])

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGT+AEKIRIQKWYNIYKDHITLRDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTKAEKIRIQKWYNIYKDHITLRDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. NCBI nr
Match: gi|297791835|ref|XP_002863802.1| (ubiquitin family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

BLAST of CmoCh04G026940 vs. NCBI nr
Match: gi|77553656|gb|ABA96452.1| (GRF zinc finger family protein [Oryza sativa Japonica Group])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLRDY
Sbjct: 206 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLRDY 265

Query: 61  EVHDGMGLELYYN 74
           E+HDGMGLELYYN
Sbjct: 266 EIHDGMGLELYYN 278

BLAST of CmoCh04G026940 vs. NCBI nr
Match: gi|937940947|dbj|BAT15859.1| (Os12g0143100, partial [Oryza sativa Japonica Group])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLRDY
Sbjct: 19 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLRDY 78

Query: 61 EVHDGMGLELYYN 74
          E+HDGMGLELYYN
Sbjct: 79 EIHDGMGLELYYN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
UBL5_ARATH1.1e-3595.89Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1[more]
UBL5_BOVIN5.1e-2879.17Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1[more]
UBL5_PSAOB5.1e-2879.17Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1[more]
UBL5_MOUSE5.1e-2879.17Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1[more]
UBL5_MESAU5.1e-2879.17Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A078H902_BRANA5.7e-3497.26BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1[more]
D7MTG3_ARALL5.7e-3497.26Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_91755... [more]
M4E4Y0_BRARP5.7e-3497.26Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0D3ABK7_BRAOL5.7e-3497.26Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1[more]
A0A164ZFL5_DAUCA5.7e-3497.26Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019101 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G42300.16.4e-3795.89 ubiquitin-like protein 5[more]
AT3G45180.11.6e-3593.15 Ubiquitin-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|1021038076|gb|KZM95859.1|8.1e-3497.26hypothetical protein DCAR_019101 [Daucus carota subsp. sativus][more]
gi|672123820|ref|XP_008785280.1|8.1e-3497.26PREDICTED: ubiquitin-like protein 5 [Phoenix dactylifera][more]
gi|297791835|ref|XP_002863802.1|8.1e-3497.26ubiquitin family protein [Arabidopsis lyrata subsp. lyrata][more]
gi|77553656|gb|ABA96452.1|1.4e-3397.26GRF zinc finger family protein [Oryza sativa Japonica Group][more]
gi|937940947|dbj|BAT15859.1|1.4e-3397.26Os12g0143100, partial [Oryza sativa Japonica Group][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006464 cellular protein modification process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0031386 protein tag

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026940.1CmoCh04G026940.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 11..70
score: 5.
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 2..73
score: 1
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..73
score: 4.7
NoneNo IPR availablePANTHERPTHR13042FAMILY NOT NAMEDcoord: 1..73
score: 3.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026940CmoCh15G004700Cucurbita moschata (Rifu)cmocmoB261