Lsi08G007210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G007210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ubiquitin-like protein
Location	chr08 : 15573914 .. 15578362 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGGCGGCGGAAAATAAATAATAAAAAACGAACGAGCGCAAAAATTTTCTCTTTAATTTTGCATTTTGCTCCGTTGAACTCTGAGACGACCTAGGGTTTTGCTTTTCTTGGGAGAGAGAAGAAAGAAGAAGATGATCGAGGTGGTGCTGAATGATCGGTTGGGGAAGAAGGTGAGAGTGAAGTGCAACGACGACGACACCATCGGCGACTTGAAGAAGCTCGTGGCTGCCCAGACTGGGACTAGAGCTGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTCAAGGATTACGAAATCCACGACGGCATGGGCCTCGAACTCTACTACAATTAGGTTATTTTCTCATCACTCTTGGATATTTATCTGTTTTTCTTATGGGATGAATTTTGGAGGCCCTGGTTGATTTTTCTGGATTTATGATGGAATTCTCTTACGTATGATGTTTTCTTTTCATCCTGTTCACTATGGCCACTCCCTAGAATTTTGTGTAGAAGATTATGATTTTTGAGATTTTATTCTTCTAGCTTTACTCGGTCCTAATATTTATGATTCCATCCATGAGTTTTGGACTAGGTAAAGAGAGAAAAGATGGTCATTGTTTGCAAGTTGATCTTTTTTGTTAGATTTTAGGGCGACGTTGGCGGTAATTTAACTCTGGTTGTGTAAAGTAGAGATAGGACAATAATAGACAACATGGGCATTATTTATTTCTTTACTTTTGTTATAATTTGTGGCTTACGCTAGAGAGTTTACTATCCATCTTGTAACTGTTAACTGTTAAGGTAGATGACTGCTACATGTTAATTTAAATACTGATGATGACAGAGTGTATAGTAGAAAGTACACTTTGAATGTGAAAGTACATATAATGAATCTGGTGGAAGTATTGATTTGTGATTGAGTAGGCATGTTTTAGCTGTTGTAATTTAGATATAAAAGAGGTTGGTAATGGTGAAAATAAAGGTGCCATGACTCAGATAAATTTGGAGAATAGTTCGTTATAGGTGACTTAGGAAGTCCTTCGTTCCAGTCGGAATGCTGATCACTTTGCTAAAGCAAGAAACAATTCTCGAAATAATTTATTGTATTGAGCTCGTCCACCTATGGGGGTGTTGCTGGATGTAAGTTGCAATATTTCTAATCTTATCCCACTAGTTCTTCCTTAATGATCTTTGATCTCTTAAAAATGAAAAACATGGAGTCATGGACGACTAGTGCATCTCGTATAACCATGTTGAACCCACCATACAAGTCATTCATCCGCTGTGATCAATTAATCTAAGGGATCTTGGGGAACTGTCTTTTACCTGATAAAGCTTTCTTTATAGCCTTGTATCATTCGAACGAAATTACTTTACCTTCTTATCTTTTCTTATGTTGTAGTTATTAGTAAGCCTACTCCTTATCGACGTAAACATCCATCGATCAGGCCATTAGAAATGTAATAATGAATCATCCCATCTTTGATCTCTCGGGGTTTTTCCCTCTACCATAAGGCCATTTAAAAACATTGAAAAAAATGCAGTTTAATATCCAATTATGCCGCCTTTGCCTAAAGCCATTTTCCTTGGGAACCACATCAAGGAAATGCCAGAAAGTAGGAAAAACTTTCTGTCATATGGACCAGATGACAATTATCTGTTAGCCATGTATGAGCTATGTCAGCAGGTAGAGTTTGCTGGCAACTATTTTGTGCCAAATAGAAATGGGTGGGTGAGGGGAGTTCTTCTGAAGGCTTCAAAACACTGATTTATCAATAGAATTTGCTATTCGTTACTTTCTCCTGCTCTCTGAATTGACGATAACTTCACCCTTTTAAATGGCTAAACTGGGAGTTGCCGGGTTTGCAACAAATAGAGGAATCCGCATCAAAATTTAATTTTTAAATCTCTTCCAAAAAGAATCGAAACTCCCGAAACCAGTGGGACACTAGGACTGGTCCTCTTCAACTCTACACAGAAAGAAAATTCCTTAAAGAGGTGAGGCTTTTATTTTGGACTCTTCATTTAGGGAGCCTTACTCCCAACTCCTAAAGTGGCCAGGTGTATTTTCTTGTAGTTAAGGAGAGGCAACTTTAATATGTTCCTCAATTACCCACTTGAGCCTAGGTCAACTAATTAAGTCATATACCCTCGGCCAACAGGTCAGAGGTTCGAATTCACTGAGCTTTGTGAAAAAATTGTTGATTGAGGAATATATATATATATATATATATATATATATAATGATAAAATTCGTCAAATTATCAATATAATGATAATTTATTGCTTGTATCTTAGCTTAAAGTTCTACGCATGGTTGCTTTCCATTTTGAAAAAGCTACATTTTCCATGTTCATGAATAGGAATAAGCTGACTTTGTCTCTTTTTAATTCAGTTAATGCAGGCACGGAAAGCCATATGCTGTGCTTTGCTACCACCCTCTTAGCTCAATGTTGTCGTATGGCGCTGCCTGTGTAATTTGTAACATAAGACGCATATATTGATAACTGTTTCAGAATAAAACTCGGTTTGGGACTTCAATGTAATACTAATACATACACAATCAAACTGCTTGTTTCGGTGATATTATATGTTGTGGTAACTTCAATTAACTTTATGCTTTAAGGAATCGTTTAGTTTTGTATTTTCATTGATTTTGAATTTAAGAAGTGGATTTCAAATTCAAAATCTGAAAAACTATATGTGATATTACATGCATACATATGACAGTGGAGCAAGCTGAATTATCATTCTTGATCCTATGAATTTACTTTATTTTCATTGTTACCCTATTTTTTATTTGAAGATTTAGGATTAAGGTTATAGAATCATTGTTTGAAGATTCGGATTCTTTTGTCAGTAAATAATTGATTTTTAGTATATTCGTTAATGATATAATAAAAATTGATATATATGTGTAGGGTGGAGAATATATTCTCCTAACATTCTCAGGAAGTGAATAAAGGTTTTTCTCTCAGCCTTCAACTTTAACTACCTTTTTAAATGTGAAGACTGTAACTTGTTAACTCTATTGCTGTTGTCTTAGTAAGGTTGAATATTAATTTTACAAGTTGTCAATTTGAGATTTTAAATGATTGTCAAGTATTACTACCAGGAAGAACCAAGCTGGGCCTATAAGATTTAGACTTTATTTTTATTTAGTTCTATAGTTTTGGAGTCTTGAGGAATGGCATTAGATGCCATTCCATTTGTATGCATTATCTTGTTCTTAGTGGCATTAAAAGAAGGCTGATGAGACATGATTATATTTATATGGTTAATTTTATTTGATAGGATCATATTAGTTAGGTTAGATTATAAAAAAATGCATCTGAATTTTGCTATTTGTTTAAAAATATTTTTATTCTTTTAAAAGTTGCAATATTACTCTTGATGTTCCATAAATGTTTGAGTAGAAACTTTCAATGAAATTTGAAACCTGGATTGAATTTTCACACTGTTCTAAGTTATTTAACATAGTTCCAAAAGACTCTCTACTCTAAGGTAATTATGAAATGTTTTGGAAGCTCTAGTGAGAGTATTTTTTAAAACAAATGAGTTTAGGTGGTTTTAATTCTTAAAACAAAAAAAGAACATCTAAAAAGTAATTTAAAGATTACTCGAACTTCGGTCAATAGTGTCAAGAAAAGTATAGCATATTGTATAAAAATATATATATATATATATAAAAAAAAAAAACCACATACACTTTCACCCCGATAATAATGTTATAAATAAAAGTAGGTTTATACTTTTCATACATCAAGTATATTCTACCAGTCAATATGAGCGCAATTCATATCTTAAGACTATTTATTTAAGTTGGAAGTTTCAATTCTTTTAGTCCATATTTGCTTTACTAAAAAATGTGTGTTAAAAAAAAAGGAATTTAGAAATCAACTATGATTCTAAAGAAATTTACCCTTTTTAAAAGGGTGAAATATATTGTTGTGAATGGAAGTAGTAGAAAAAGAACAATAAGAAAACAAAATATAAAAAGAAAGCTCTATTTTTAAAGACATATATATAGTTAGTTGTAGACATTTTTATGAGTGAAGATGCAATTATTTTTGTATATATTAATCCTACTGATATAATGTTTTGATATAAAGTCTAAACATTTATCTTTTTAAAAATATCTTATTATATAATAATGAAATACAATCCTTCTTGGATTATTAAATATTATATATATTTTTTCCACGAATGTCTCATGGTATTGTTTAATTTGAAAAATGAAGGGGTTTGTGGAGGCAACGAGGAATCAGATCAGAGAGAGCAATATTTAATGTTGATATTGAGCTGTTTTTAGCAATCGTCAAAGTTGGAAGAAACCATGGCGATGAACAAGGTAATAAATGTCTGTTTGTTTGACCAAATTTGTTGTTGACTTTACAGCTAAATAACACCATCTCAAACTAATGCCAAGTTGGTCCAATGTTTTTTC

mRNA sequence

CAAGGCGGCGGAAAATAAATAATAAAAAACGAACGAGCGCAAAAATTTTCTCTTTAATTTTGCATTTTGCTCCGTTGAACTCTGAGACGACCTAGGGTTTTGCTTTTCTTGGGAGAGAGAAGAAAGAAGAAGATGATCGAGGTGGTGCTGAATGATCGGTTGGGGAAGAAGGTGAGAGTGAAGTGCAACGACGACGACACCATCGGCGACTTGAAGAAGCTCGTGGCTGCCCAGACTGGGACTAGAGCTGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTCAAGGATTACGAAATCCACGACGGCATGGGCCTCGAACTCTACTACAATTAGTTAATGCAGGCACGGAAAGCCATATGCTGTGCTTTGCTACCACCCTCTTAGCTCAATGTTGTCGTATGGCGCTGCCTGTGTAATTTGTAACATAAGACGCATATATTGATAACTGTTTCAGAATAAAACTCGGTTTGGGACTTCAATGTAATACTAATACATACACAATCAAACTGCTTGTTTCGGTGATATTATATGTTGTGGTAACTTCAATTAACTTTATGCTTTAAGGAATCGTTTAGTTTTGTATTTTCATTGATTTTGAATTTAAGAAGTGGATTTCAAATTCAAAATCTGAAAAACTATATGTGATATTACATGCATACATATGACAGTGGAGCAAGCTGAATTATCATTCTTGATCCTATGAATTTACTTTATTTTCATTGTTACCCTATTTTTTATTTGAAGATTTAGGATTAAGGTTATAGAATCATTGTTTGAAGATTCGGATTCTTTTGTCAGTAAATAATTGATTTTTAGTATATTCGTTAATGATATAATAAAAATTGATATATATGTGTAGGGTGGAGAATATATTCTCCTAACATTCTCAGGAAGTGAATAAAGGGGTTTGTGGAGGCAACGAGGAATCAGATCAGAGAGAGCAATATTTAATGTTGATATTGAGCTGTTTTTAGCAATCGTCAAAGTTGGAAGAAACCATGGCGATGAACAAGGTAATAAATGTCTGTTTGTTTGACCAAATTTGTTGTTGACTTTACAGCTAAATAACACCATCTCAAACTAATGCCAAGTTGGTCCAATGTTTTTTC

Coding sequence (CDS)

ATGATCGAGGTGGTGCTGAATGATCGGTTGGGGAAGAAGGTGAGAGTGAAGTGCAACGACGACGACACCATCGGCGACTTGAAGAAGCTCGTGGCTGCCCAGACTGGGACTAGAGCTGAGAAGATTCGGATTCAGAAATGGTACAATATCTACAAGGATCATATTACTCTCAAGGATTACGAAATCCACGACGGCATGGGCCTCGAACTCTACTACAATTAG

Protein sequence

MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN

Homology

[Close]

BLAST of Lsi08G007210 vs. Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of Lsi08G007210 vs. Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of Lsi08G007210 vs. Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of Lsi08G007210 vs. Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of Lsi08G007210 vs. TrEMBL
Match: Q570V8_ARATH (Ubiquitin-like protein OS=Arabidopsis thaliana GN=At5g42300 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TrEMBL
Match: A9PD58_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03900g PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          M+EVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MLEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TrEMBL
Match: A0A0A0KJ74_CUCSA (Ubiquitin-like protein OS=Cucumis sativus GN=Csa_6G405880 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTR+EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRSEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TrEMBL
Match: W9R5S1_9ROSA (Ubiquitin-like protein 5 OS=Morus notabilis GN=L484_008053 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TrEMBL
Match: A0A164ZFL5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019101 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TAIR10
Match: AT5G42300.1 (AT5G42300.1 ubiquitin-like protein 5)

HSP 1 Score: 153.3 bits (386), Expect = 5.8e-38
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. TAIR10
Match: AT3G45180.1 (AT3G45180.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 9.2e-36
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN++DTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHI LKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. NCBI nr
Match: gi|15238924|ref|NP_199045.1| (ubiquitin-like protein 5 [Arabidopsis thaliana])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. NCBI nr
Match: gi|224100789|ref|XP_002312015.1| (hypothetical protein POPTR_0008s03900g [Populus trichocarpa])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          M+EVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MLEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. NCBI nr
Match: gi|449464380|ref|XP_004149907.1| (PREDICTED: ubiquitin-like protein 5 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTR+EKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRSEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. NCBI nr
Match: gi|1021038076|gb|KZM95859.1| (hypothetical protein DCAR_019101 [Daucus carota subsp. sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL+DY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLRDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of Lsi08G007210 vs. NCBI nr
Match: gi|703075048|ref|XP_010089975.1| (Ubiquitin-like protein 5 [Morus notabilis])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

The following BLAST results are available for this feature:

BLAST of Lsi08G007210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBL5_ARATH	1.0e-36	100.00	Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1	[more]
UBL5_PSAOB	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1	[more]
UBL5_MOUSE	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1	[more]
UBL5_MESAU	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1	[more]
UBL5_BOVIN	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1	[more]

BLAST of Lsi08G007210 vs. TrEMBL


Match Name	E-value	Identity	Description
Q570V8_ARATH	1.1e-34	100.00	Ubiquitin-like protein OS=Arabidopsis thaliana GN=At5g42300 PE=2 SV=1	[more]
A9PD58_POPTR	2.0e-34	98.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03900g PE=2 SV=1	[more]
A0A0A0KJ74_CUCSA	2.5e-34	98.63	Ubiquitin-like protein OS=Cucumis sativus GN=Csa_6G405880 PE=4 SV=1	[more]
W9R5S1_9ROSA	2.5e-34	98.63	Ubiquitin-like protein 5 OS=Morus notabilis GN=L484_008053 PE=4 SV=1	[more]
A0A164ZFL5_DAUCA	2.5e-34	98.63	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019101 PE=4 SV=1	[more]

BLAST of Lsi08G007210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42300.1	5.8e-38	100.00	ubiquitin-like protein 5	[more]
AT3G45180.1	9.2e-36	94.52	Ubiquitin-like superfamily protein	[more]

BLAST of Lsi08G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|15238924\|ref\|NP_199045.1\|	1.6e-34	100.00	ubiquitin-like protein 5 [Arabidopsis thaliana]	[more]
gi\|224100789\|ref\|XP_002312015.1\|	2.8e-34	98.63	hypothetical protein POPTR_0008s03900g [Populus trichocarpa]	[more]
gi\|449464380\|ref\|XP_004149907.1\|	3.7e-34	98.63	PREDICTED: ubiquitin-like protein 5 [Cucumis sativus]	[more]
gi\|1021038076\|gb\|KZM95859.1\|	3.7e-34	98.63	hypothetical protein DCAR_019101 [Daucus carota subsp. sativus]	[more]
gi\|703075048\|ref\|XP_010089975.1\|	3.7e-34	98.63	Ubiquitin-like protein 5 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G007210.1	Lsi08G007210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 11..70 score: 4.
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 2..73 score: 10
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..73 score: 3.9
None	No IPR available	PANTHER	PTHR13042	FAMILY NOT NAMED	coord: 1..73 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G007210	Csa6G405880	Cucumber (Chinese Long) v2	culsiB479
Lsi08G007210	CSPI06G21400	Wild cucumber (PI 183967)	cpilsiB488
Lsi08G007210	Cucsa.137660	Cucumber (Gy14) v1	cgylsiB220
Lsi08G007210	CmaCh15G004600	Cucurbita maxima (Rimu)	cmalsiB295
Lsi08G007210	CmaCh04G025720	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G007210	CmoCh04G026940	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G007210	CmoCh15G004700	Cucurbita moschata (Rifu)	cmolsiB283
Lsi08G007210	Cla013767	Watermelon (97103) v1	lsiwmB475
Lsi08G007210	MELO3C019800	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G007210	ClCG08G007540	Watermelon (Charleston Gray)	lsiwcgB443
Lsi08G007210	MELO3C019800.2	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G007210	Cla97C08G150260	Watermelon (97103) v2	lsiwmbB448
Lsi08G007210	Bhi04G001098	Wax gourd	lsiwgoB612
Lsi08G007210	Cp4.1LG01g24320	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G007210	Cp4.1LG13g09870	Cucurbita pepo (Zucchini)	cpelsiB159
Lsi08G007210	CsGy6G020660	Cucumber (Gy14) v2	cgyblsiB445
Lsi08G007210	Carg02407	Silver-seed gourd	carlsiB244
Lsi08G007210	Carg04559	Silver-seed gourd	carlsiB628
Lsi08G007210	CsaV3_6G036470	Cucumber (Chinese Long) v3	cuclsiB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G007210	Cucumber (Chinese Long) v2	culsiB146
Lsi08G007210	Cucumber (Chinese Long) v2	culsiB389
Lsi08G007210	Melon (DHL92) v3.5.1	lsimeB463
Lsi08G007210	Melon (DHL92) v3.5.1	lsimeB483
Lsi08G007210	Watermelon (Charleston Gray)	lsiwcgB435
Lsi08G007210	Watermelon (97103) v1	lsiwmB485
Lsi08G007210	Cucumber (Gy14) v2	cgyblsiB354
Lsi08G007210	Cucumber (Gy14) v2	cgyblsiB451
Lsi08G007210	Melon (DHL92) v3.6.1	lsimedB482
Lsi08G007210	Silver-seed gourd	carlsiB769
Lsi08G007210	Cucumber (Chinese Long) v3	cuclsiB412
Lsi08G007210	Cucumber (Chinese Long) v3	cuclsiB516
Lsi08G007210	Watermelon (97103) v2	lsiwmbB434
Lsi08G007210	Watermelon (97103) v2	lsiwmbB439
Lsi08G007210	Wax gourd	lsiwgoB594
Lsi08G007210	Wax gourd	lsiwgoB618
Lsi08G007210	Bottle gourd (USVL1VR-Ls)	lsilsiB086
Lsi08G007210	Bottle gourd (USVL1VR-Ls)	lsilsiB152
Lsi08G007210	Cucumber (Gy14) v1	cgylsiB498
Lsi08G007210	Cucurbita maxima (Rimu)	cmalsiB395
Lsi08G007210	Cucurbita maxima (Rimu)	cmalsiB706
Lsi08G007210	Cucurbita moschata (Rifu)	cmolsiB381
Lsi08G007210	Cucurbita moschata (Rifu)	cmolsiB700
Lsi08G007210	Cucurbita pepo (Zucchini)	cpelsiB384
Lsi08G007210	Wild cucumber (PI 183967)	cpilsiB393